BAC Information

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BAC

Clone NameB6Ng01-020L07
Chromosome6 (Build37)
Map Location 49,330,481 - 49,331,567
singlet/doubletsinglet
Overlap geneD330028D13Rik
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126
Downstream geneStk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020L07.g
ACCDH853427
length1,061
definitionDH853427|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttttgatttaattttcctatcttagaatattcctggtgtatt
tttaattttttccaaaaatttgacctaatttttttctataaaaacattgc
tgctttttacttagtagcatattaactatgcctattaatatcgagagaac
tcatcattcatattttgccttcatttatttgtgctcttctgcacacacaa
gaggaattttgaaattatttttctaggaggcccacacaattcttattatt
tctatttaatctttaaattaaatgcatatttgtgtatatgtaggcacaca
tgtgtatatatgtatgcgggcacatgtggaatctagaggataacttttgg
aagaaatttctctgtttctatcacataggacctctgttttgggagtttta
ggtagacttttcagtatagttagcaaatagtgatatttttgcctctcttt
tacccagatcttgctaatcctttcagtggttttatcctcgttctgaatgg
tgatgatgaactgccatcttggcctttctaatatttgtccctcaagttgc
tgcaatgtacagaaagaaacctttcatcttgccccctaccccccttttta
acttttctattgctgtgataaaacaccattccctgggcaacttataaaag
gaagtgtttaatctgggcttgtggttccagatggttggagtctctgactg
aagtgaaggcatggctgtaagaatacctgagattcacatcttgaggcaca
actaggaggcagaaagctaactggggatggtgtgggcttttgaaacttca
aagctcaccccagtgccaaacctcttccaccaaggccacaccttctaatc
tttcccaacagttctacccactgggggactattattcagatattgagtct
gtgggctattctattcaagctagcaaaaccatgaggagcaggtggtatgc
aaggtaatgaggagagatctagatttctgtctgctgaaaagacccaggtg
tgggctttgctctgagccatgtggatcaaacgtggcgtctcgcctgggac
tgatttctgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49330481_49331567
seq2: B6Ng01-020L07.g_64_1124

seq1  GAATTCACTTATGATTTAATTTTACTATCTTAGAATATTCCTGGTGTATT  50
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  GAATTCACTTTTGATTTAATTTTCCTATCTTAGAATATTCCTGGTGTATT  50

seq1  TTTAATTTTTTCCAGAAATTTGGCCTAATTTTTTTCTATAAAAACATTGC  100
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TTTAATTTTTTCCAAAAATTTGACCTAATTTTTTTCTATAAAAACATTGC  100

seq1  AGTATTTTACTTAGTAGCATATTAACTATGCATATTAATATAGAGAGAAC  150
       |  ||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TGCTTTTTACTTAGTAGCATATTAACTATGCCTATTAATATCGAGAGAAC  150

seq1  AGATAATTTATATTTTGCCTTCATTTATTTGTGCTCTTCTGCACAGACAA  200
        || ||| |||||||||||||||||||||||||||||||||||| ||||
seq2  TCATCATTCATATTTTGCCTTCATTTATTTGTGCTCTTCTGCACACACAA  200

seq1  GTGGAATTTTGAAATTATTTTTCTAGGAGGCCCACACAATTCTTATTATT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTTTGAAATTATTTTTCTAGGAGGCCCACACAATTCTTATTATT  250

seq1  TCTATTTAATCTTTAAATTAAATGCATATTTGTGTATATGTAGGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAATCTTTAAATTAAATGCATATTTGTGTATATGTAGGCACACA  300

seq1  TGTGTATATATGTATGCGGGCACATGTGGAATCTAGAGGATAACTTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATATGTATGCGGGCACATGTGGAATCTAGAGGATAACTTTTGG  350

seq1  AAGAAATTTCTCTGTTTCTATCACATAGGACCTCTGTTTTGGGAGTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTCTCTGTTTCTATCACATAGGACCTCTGTTTTGGGAGTTTTA  400

seq1  GGTAGACTTTTCAGTATAGTTAGCAAATAGTGATATTTTTGCCTCTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTTTTCAGTATAGTTAGCAAATAGTGATATTTTTGCCTCTCTTT  450

seq1  TACCCAGATCTTGCTAATCCTTTCAGTGGTTTTATCCTCGTTCTGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGATCTTGCTAATCCTTTCAGTGGTTTTATCCTCGTTCTGAATGG  500

seq1  TGATGATGAACTGCCATCTTGGCCTTTCTAATATTTGTCCCTCAAGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGAACTGCCATCTTGGCCTTTCTAATATTTGTCCCTCAAGTTGC  550

seq1  TGCAATGTACAGAAAGAAACCTTTCATCTTGCCCCCTACCCCCCTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTACAGAAAGAAACCTTTCATCTTGCCCCCTACCCCCCTTTTTA  600

seq1  ACTTTTCTATTGCTGTGATAAAACACCATTCCCTGGGCAACTTATAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTATTGCTGTGATAAAACACCATTCCCTGGGCAACTTATAAAAG  650

seq1  GAAGTGTTTAATCTGGGCTTGTGGTTCCAGATGGTTGGAGTCTCTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTAATCTGGGCTTGTGGTTCCAGATGGTTGGAGTCTCTGACTG  700

seq1  AAGTGAAGGCATGGCTGTAAGAATACCTGAGAATTCACATCTTGAGGCAC  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTGAAGGCATGGCTGTAAGAATACCTGAG-ATTCACATCTTGAGGCAC  749

seq1  AACTAGGAGGCAGAAAGCTAACTGGGGATGGTGTGGGCTTTTGAAACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAGGCAGAAAGCTAACTGGGGATGGTGTGGGCTTTTGAAACTTC  799

seq1  AAAGCTCAACCCCAGTGCCAAACCTCTTCCACCAAGGCCACACCTTCTAA  850
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTC-ACCCCAGTGCCAAACCTCTTCCACCAAGGCCACACCTTCTAA  848

seq1  TCCTTCCCAAACAGTTCTACCCACTGGGGGACAATTATTCAGATATATGA  900
      || ||||| ||||||||||||||||||||||| ||||||||||||| |||
seq2  TCTTTCCC-AACAGTTCTACCCACTGGGGGACTATTATTCAGATAT-TGA  896

seq1  GTCTGTGGGCTATTCTTATTCAAGCTAGCAAAAACCATGAGGAAGCAGGG  950
      ||||||||||||||| ||||||||||||| |||||||||||| |||| ||
seq2  GTCTGTGGGCTATTC-TATTCAAGCTAGC-AAAACCATGAGG-AGCA-GG  942

seq1  TGGTAAGCAAAGGTAAGTGAGGAGAGATCTAGAAATTTCTGTCCTGCTGG  1000
      ||||| || ||||||| |||||||||||||||  |||||||| ||||| |
seq2  TGGTATGC-AAGGTAA-TGAGGAGAGATCTAG--ATTTCTGT-CTGCT-G  986

seq1  AAGAGAACCCAGGGTGTTGGGGCTTTGGCTCTGAGCCATGTTGGGTTCTA  1050
      || || ||||| |||||  ||||||| ||||||||||||||  || || |
seq2  AAAAG-ACCCA-GGTGT--GGGCTTT-GCTCTGAGCCATGT--GGATC-A  1028

seq1  GACAGTGGTGTTCTCTGCCTGGGACTTGATTTCTGTG  1087
       || |||| | |||| ||||||||| |||||||||||
seq2  AAC-GTGGCG-TCTC-GCCTGGGAC-TGATTTCTGTG  1061