BAC Information

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BAC

Clone NameB6Ng01-020P24
Chromosome6 (Build37)
Map Location 36,293,690 - 36,294,810
singlet/doubletsinglet
Overlap gene9330158H04Rik
Upstream geneMtpn, LOC100039312, LOC100039327
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020P24.bB6Ng01-020P24.g
ACCDH853635DH853636
length1,1191,173
definitionDH853635|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P24, 5' end.DH853636|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgtaccccaatttttaatggggttatttgaat
ttctgtagtccagcttcttgagctctttgtatatattggatattacacta
atcctatcagatttaggattggtaaaaatcctttcccactctgttgctgg
ctttttttttttttgtcttattgacactctcttttgccttacagaagcat
tgcagttttatgaggtcccatttgtcgattctcgatcttacaacacaagc
cattggtgttctgttcagaaatttttcccctgttcccatatctttgaggt
ttttctccactttcttctctgtaaatttcagtgtctctggttttatgtgg
agttctttgatccatttagtcttaaaggacctttctcttactctcctgct
ccatccagtgaatgctaaggttgcagacataagctactctgcctaattct
ctctcccaatccctctccctctccctcctcctccccctcccccctctctt
aatctatggggttcttgtgggtctagttttcagatgaaatttccccccag
gacactttgctcaagcttctgtggaaagagtctctcttgcatgaggacct
ggttccacacagggctcctagtgcaagtgtggcttttcagccaatttgag
gctcaggttcttgataccaaatgcttagggacattatcctaagcacaaag
ctcacctttggaattcttgctgctcacaaacattttctcattctttgaga
gatgagttgaatcgtggacttagaaacatacccattagttatttcctatg
cagaatgtcatttcctgtctgtgtcccttccttcttctgcaactatatta
tagttcagagagggcagaggatagaatggttcaccaaaggtgcccaagtc
ttttcacgttttcatgtttcttctcagttttctgctttgccttaatgttt
aagtttatcttgcccgtcactaatttaattttcttattgtctcttctgga
gcttcttgattcacaaaccattttaattttttattttgtctttttttttc
tctacttttgagaacaagctgctgggccaaattcaagctttacatcatgg
ctttcagaaaacccctcct
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttatagtagccagaagctggaaagaacctagat
gcccctcaacagaggtatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacactcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacagtagccagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggcttcct
atggaaggagctagaagaaagtgccaaggagcttaaagggatctggctac
cctataggtgtacaaacattatgactaccagtatcccggagctttgatta
gctgccaaatatataaaaagatggccatgctgccttactggaaagaagag
tccatggaattcgcactttttatgtccggttcaggtaacctgggccaaag
gggtgggtgtgttacggagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36293690_36294810
seq2: B6Ng01-020P24.b_46_1164 (reverse)

seq1  AGGAGGGG-CTTCTGTAAGCCATGAATGTAAAGCCTTTGGATGTGGCCCA  49
      ||||||||  ||||| |||||||| |||||||||  ||| || |||||||
seq2  AGGAGGGGTTTTCTGAAAGCCATG-ATGTAAAGC--TTGAATTTGGCCCA  47

seq1  GCAAGCTTG-TCTCAAAAGTAGAAGAAAAAAAAAGACAAAAATAAAAAGT  98
      || |||||| |||||||||||| ||||||||||||||||||  ||||| |
seq2  GC-AGCTTGTTCTCAAAAGTAG-AGAAAAAAAAAGACAAAATAAAAAATT  95

seq1  AAAAT-GTGTGTGAAACCAAGGAGCTACAGAAGAGACAATAAAGAAAATT  147
      ||||| || |||| || |||| |||| ||||||||||||| |||||||||
seq2  AAAATGGTTTGTG-AATCAAGAAGCTCCAGAAGAGACAAT-AAGAAAATT  143

seq1  AAATTAGTGACGGGCAAGATAAACTTAAACATTAGGGCAAAGCAAGAAAA  197
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AAATTAGTGACGGGCAAGATAAACTTAAACATTAAGGCAAAGC-AGAAAA  192

seq1  CTGGAGAAGAAACATGGAAAACGTG-AAAGACTTGGGCACCTTTGGTGAA  246
      || |||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CT-GAGAAGAAACAT-GAAAACGTGAAAAGACTTGGGCACCTTTGGTGAA  240

seq1  CCATTCTATCCTCTGCCCTCTCTG-ACTATAATATAGTTGCAGAAGAA-G  294
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  CCATTCTATCCTCTGCCCTCTCTGAACTATAATATAGTTGCAGAAGAAGG  290

seq1  AAGGGACACAGACAGG-AATGACATTCTGCATAGGAAATAACTAAT-GGT  342
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AAGGGACACAGACAGGAAATGACATTCTGCATAGGAAATAACTAATGGGT  340

seq1  ATGTTTCTAAGTCCACGATTCAACTCATCTCTCAAAGAATGAGAAAATG-  391
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGTTTCTAAGTCCACGATTCAACTCATCTCTCAAAGAATGAGAAAATGT  390

seq1  TTGTGAGCAGCAAGAATTCCAAAGGTGAGCTTTGTGCTTAGGATAATGTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCAGCAAGAATTCCAAAGGTGAGCTTTGTGCTTAGGATAATGTC  440

seq1  CCTAAGCATTTGGTATCAAGAACCTGAGCCTCAAATTGGCTGAAAAGCCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCATTTGGTATCAAGAACCTGAGCCTCAAATTGGCTGAAAAGCCA  490

seq1  CACTTGCACTAGGAGCCCTGTGTGGAACCAGGTCCTCATGCAAGAGAGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCACTAGGAGCCCTGTGTGGAACCAGGTCCTCATGCAAGAGAGAC  540

seq1  TCTTTCCACAGAAGCTTGAGCAAAGTGTCCTGGGGGGAAATTTCATCTGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACAGAAGCTTGAGCAAAGTGTCCTGGGGGGAAATTTCATCTGA  590

seq1  AAACTAGACCCACAAGAACCCCATAGATTAAGAGAGGGGGGAGGGGGAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACCCACAAGAACCCCATAGATTAAGAGAGGGGGGAGGGGGAGG  640

seq1  AGGAGGGAGAGGGAGAGGGATTGGGAGAGAGAATTAGGCAGAGTAGCTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGAGGGAGAGGGATTGGGAGAGAGAATTAGGCAGAGTAGCTTA  690

seq1  TGTCTGCAACCTTAGCATTCACTGGATGGAGCAGGAGAGTAAGAGAAAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAACCTTAGCATTCACTGGATGGAGCAGGAGAGTAAGAGAAAGG  740

seq1  TCCTTTAAGACTAAATGGATCAAAGAACTCCACATAAAACCAGAGACACT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAGACTAAATGGATCAAAGAACTCCACATAAAACCAGAGACACT  790

seq1  GAAATTTACAGAGAAGAAAGTGGAGAAAAACCTCAAAGATATGGGAACAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTACAGAGAAGAAAGTGGAGAAAAACCTCAAAGATATGGGAACAG  840

seq1  GGGAAAAATTTCTGAACAGAACACCAATGGCTTGTGTTGTAAGATCGAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAATTTCTGAACAGAACACCAATGGCTTGTGTTGTAAGATCGAGA  890

seq1  ATCGACAAATGGGACCTCATAAAACTGCAATGCTTCTGTAAGGCAAAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACAAATGGGACCTCATAAAACTGCAATGCTTCTGTAAGGCAAAAGA  940

seq1  GAGTGTCAATAAGACAAAAAAAAAAAAAAGCCAGCAACAGAGTGGGAAAG  991
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAATAAGAC-AAAAAAAAAAAAAGCCAGCAACAGAGTGGGAAAG  989

seq1  GATTTTTACCAATCCTAAATCTGATAGGATTAGTGTAATATCCAATATAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTACCAATCCTAAATCTGATAGGATTAGTGTAATATCCAATATAT  1039

seq1  ACAAAGAGCTCAAGAAGCTGGACTACAGAAATTCAAATAACCCCATTAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGCTCAAGAAGCTGGACTACAGAAATTCAAATAACCCCATTAAA  1089

seq1  AATTGGGGTACAGAGCTAAACAAAGAATTC  1121
      ||||||||||||||||||||||||||||||
seq2  AATTGGGGTACAGAGCTAAACAAAGAATTC  1119