BAC Information

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BAC

Clone NameB6Ng01-021G16
Chromosome12 (Build37)6 (Build37)
Map Location 57,222,909 - 57,223,987146,150,381 - 146,150,576
singlet/doubletsingletsinglet
Overlap geneLOC382601
Upstream gene1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600
Downstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021G16.bB6Ng01-021G16.g
ACCDH853926DH853927
length1,065108
definitionDH853926|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G16, 5' end.DH853927|Mus musculus domesticus DNA, BAC clone: B6Ng01-021G16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,222,909 - 57,223,987)(146,150,381 - 146,150,576)
sequence
gaattccaagaccaaggtcttgctaaggacgaactaggactgttggaaca
ctggtggaaggcttaagccatgtcagaattcaattttaaaaagcacttat
aataggaaaatactgaaagagagcacggggatccatacactagactaacg
tgggaatggaatgcgggaatgaaaaattactgtatgggtagggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctttcggcttgtccagttgactcgaccagagagcgtagcaatca
tctaggtcaattcaggaagaaaaagggtattcttaaagatttagaaaagg
aaggataccagtggattgacaaatcctatgtgaggtttcaaattagaaga
cttaagacaaaatacattttcaaaattctccaaattggttttctgactta
tgccatcatgtagggaagagctctcctgtaaatatatttaattatcttgg
taagttcataagccttaggaagtggtcttgcacaataaggataaaacaaa
acgttggattggttggaattttgccacctctccttccctcctatgtcact
tcacactaagttaggaaaaaggagatgcgatgtgaagcctcagaaccaga
aatgattctaagcagatgagaggtgaggcctaggtgtgcctgaaatgatg
ccccagccaccaacattgatgtgatcctacactgataaagcagaaggggc
aaatttgggaagctgccctggctgtctcttcatttgggagagactttgat
tctttcctccagtctgacttttctcttactgatcactgtcctgcaacccc
tctcctacaactccctctctgggcctaagtctcctctgcttctgtagaac
tttagtaaagtaaaacacaaaggaactgacatagctgccaacccatatgt
acactgctaagctactcctctttctgcttgtgtctactctgcccataagc
tccactgtgaaagaaaggttactttacagacctagaaccaagaattataa
ggcctttaagtagcc
attaaaggattatgcagatgctgttgtttggagggctttgaggactctgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtga
gactgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57222909_57223987
seq2: B6Ng01-021G16.b_42_1106

seq1  GAATTCCAAGACCAAGGTCTTGCTAAGGACGAACTAGGACTGTTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCAAGGTCTTGCTAAGGACGAACTAGGACTGTTGGAACA  50

seq1  CTGGTGGAAGGCTTAAGCCATGTCAGAATTCAATTTTAAAAAGCACTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAAGGCTTAAGCCATGTCAGAATTCAATTTTAAAAAGCACTTAT  100

seq1  AATAGGAAAATACTGAAAGAGAGCACGGGGATCCATACACTAGACTAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAATACTGAAAGAGAGCACGGGGATCCATACACTAGACTAACG  150

seq1  TGGGAATGGAATGCGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGGAATGCGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTA  200

seq1  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250

seq1  TTAAGCCTTTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTTTCGGCTTGTCCAGTTGACTCGACCAGAGAGCGTAGCAATCA  300

seq1  TCTAGGTCAATTCAGGAAGAAAAAGGGTATTCTTAAAGATTTAGAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCAATTCAGGAAGAAAAAGGGTATTCTTAAAGATTTAGAAAAGG  350

seq1  AAGGATACCAGTGGATTGACAAATCCTATGTGAGGTTTCAAATTAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACCAGTGGATTGACAAATCCTATGTGAGGTTTCAAATTAGAAGA  400

seq1  CTTAAGACAAAATACATTTTCAAAATTCTCCAAATTGGTTTTCTGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACAAAATACATTTTCAAAATTCTCCAAATTGGTTTTCTGACTTA  450

seq1  TGCCATCATGTAGGGAAGAGCTCTCCTGTAAATATATTTAATTATCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCATGTAGGGAAGAGCTCTCCTGTAAATATATTTAATTATCTTGG  500

seq1  TAAGTTCATAAGCCTTAGGAAGTGGTCTTGCACAATAAGGATAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCATAAGCCTTAGGAAGTGGTCTTGCACAATAAGGATAAAACAAA  550

seq1  ACGTTGGATTGGTTGGAATTTTGCCACCTCTCCTTCCCTCCTATGTCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGGATTGGTTGGAATTTTGCCACCTCTCCTTCCCTCCTATGTCACT  600

seq1  TCACACTAAGTTAGGAAAAAGGAGATGCGATGTGAAGCCTCAGAACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTAAGTTAGGAAAAAGGAGATGCGATGTGAAGCCTCAGAACCAGA  650

seq1  AATGATTCTAAGCAGATGAGAGGTGAGGCCTAGGTGTGCCTGAAATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCTAAGCAGATGAGAGGTGAGGCCTAGGTGTGCCTGAAATGATG  700

seq1  CCCCAGCCACCAACATTGATGTGATCCTACACTGATAAAGCAGAAGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCACCAACATTGATGTGATCCTACACTGATAAAGCAGAAGGGGC  750

seq1  AAATTTGGGAAGCTGCCCTGGCTGTCTCTTCATTTGGGAGAGACTTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGGAAGCTGCCCTGGCTGTCTCTTCATTTGGGAGAGACTTTGAT  800

seq1  TCTTTCCTCCAGTCTGACTTTTCTCTTACTGATCACTGTCCTGCAACCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCCAGTCTGACTTTTCTCTTACTGATCACTGTCCTGCAACCCC  850

seq1  TCTCCTACAACTCCCTCTCTGGGCCTAAGTCTCCTCTGCTTCTGTAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACAACTCCCTCTCTGGGCCTAAGTCTCCTCTGCTTCTGTAGAAC  900

seq1  TTTAGTAAAGTAAAACACAAAGGAACTGACATTAGCTGCCAACCCATATG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTAGTAAAGTAAAACACAAAGGAACTGACA-TAGCTGCCAACCCATATG  949

seq1  TACACTGCTAAGCTAACTCCTCTTTCTGGCTTGTTGGTCTACTCTGCCCA  1000
      |||||||||||||| |||||||||||| ||||||  ||||||||||||||
seq2  TACACTGCTAAGCT-ACTCCTCTTTCT-GCTTGT--GTCTACTCTGCCCA  995

seq1  TAGGCTCCACTGTGATAAGAGAAGGGGTTACTTTACAGACCCTAGAAACC  1050
      || |||||||||||| |||| |   |||||||||||||| |||||||  |
seq2  TAAGCTCCACTGTGA-AAGAAA---GGTTACTTTACAGA-CCTAGAA--C  1038

seq1  AAAGAATTATAAGGGCTTTTATAGTAGCC  1079
       ||||||||||||| ||||   |||||||
seq2  CAAGAATTATAAGGCCTTT--AAGTAGCC  1065

seq1: chr6_146150381_146150576
seq2: B6Ng01-021G16.g_116_178 (reverse)

seq1  TGCAGACTCACACACACACACACACACACACACACACACACACACACACC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCAGTCTCACACACACACACACACACACACACACACACACACACACACA  50

seq1  CCTACACACATACTACCCACACATGCAACACACACACACATACTACCCAC  100
      |  ||||||| |                                      
seq2  CACACACACAGAG-------------------------------------  63

seq1  ACACCTATATATACACAAACCACAATATACACATACATGCATCACATATT  150
                                                        
seq2  --------------------------------------------------  63

seq1  CACAAGCATCAGACAGACACATGTACTACAACACACACACACAGAG  196
                                                    
seq2  ----------------------------------------------  63