BAC Information

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BAC

Clone NameB6Ng01-021I19
Chromosome6 (Build37)
Map Location 16,646,113 - 16,774,866
singlet/doubletdoublet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021I19.bB6Ng01-021I19.g
ACCDH854024DH854025
length1,1221,074
definitionDH854024|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I19, 5' end.DH854025|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,646,113 - 16,647,261)(16,773,787 - 16,774,866)
sequence
gaattcattcattcttttgattttggagcttctcatgtaattgacaaagc
aactgatggaaaggatataataaattttatgctcatatcaccttacctgt
aacaaaccaaaggaaagacacagagcaccgtgtgcaatgtgctcactctc
cacagtaaagagagatggtcaattacgctatgaagatgtagttccaagat
tcaaatgttccctttcacacacacacacacacacacacacacacacacac
acacacacacactaacatgcactattgttacccaggtagagaagtctcct
agactctagtcactaagctttgatgtcaacaaactctggccttttcttgg
ctggcctcttacccaggagtggatgcatgtggatgctgtaattgaggtca
ggggtgctaatctccctgagatgtctgaactctgagaagcgccaccatca
ttttttgcccatccttcctctctcctgttccttaacaggagagagagaga
gaggagagagagagagagagagagagagagagagagagagagagagagat
gcatttgcttttgttacaggcaaattaacctgctgttgcattcattcggg
tctgttttaaacctcttcatcatttaaattaaaataaagcaaagtataga
aagagaagtttgccatttctcatttaaatcagttatccaggaacaaagtg
aatttcttcaattttgtaaggttcacacagggaacgctgagggatctttt
caggaaaagactgttggttaagtcctttgtcatattatgagcacatttta
aaataataaaaatgatcttttaatccttgattttacataatttctataat
tcaaacatatattttgttcctcattgaattttaatgtcagtattttgtaa
tgaaatgcagtatttctattggttctctgctgattttttttttatcatca
actgtatgatactttgggagttcagaggagggggtacacacacttgcttt
ctgcattttttagtcctcctaatgatttttaattctattcaaagatccat
atcagtttcttccgctgtaaagaaatctttcctcgtatggtataggaaag
atctgaatgctttcaatgcccc
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatatattggatattagtcc
cctatctgatttgggataggtaaatatcctttcccaatctgttggtggcc
tttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttt
atgaggtcccatttatcgattctcgatcttacagcacaagccattgcagt
tctttttaggaatttttccccatgtgcccatatctttgaggcttttccct
ctataagtttcagtgtctctggttttatgtggagttccttgatccactta
gatttgaccttagtacaaggactagaaatgtaaatgaggaaaatacctaa
taaataaataaataagtaaaaattccaaattctaggccaagtctgacaat
gcactatttctacaaaggaccatgtagtctttcatggcctctgtggttat
gttgtctagatcctttcccatggctctaaagaccaagcagaaggcatgct
cctcatcccccacagcctcatgaccacttcattcctcattcctgagaact
atatctgtttcatttgttatagagtgattagctctgagcaatgagagaac
tatattccccaaaaagagagatttgaaagtaaaaagatgagacattagat
gggttttcagagcagcagcaaccatcactaaacacagggatcaacagcct
gccgaagctccaggggcagaaatggtgttatagctcctcttatgcagcca
tgccggatctcccagacagtttggaatggtttcagatagagaccagatat
ccaatagtatgaaacatagactgtcctttgtgtgggatattgtatctggt
ggtgaaaaaagaattgagagactgtggtctgatatggaaaaatattggta
gatggattacttttaatattagtattttttatacagaactacatgcaagt
gatttttcttctaggtaatgacagaaaatagaagacttagagactatatt
catactctctgtatatatagatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16646113_16647261
seq2: B6Ng01-021I19.b_46_1167

seq1  GAATTCATTCATTCTTTTGATTTTGGAGCTTCTCATGTAATTGACAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTCTTTTGATTTTGGAGCTTCTCATGTAATTGACAAAGC  50

seq1  AACTGATGGAAAGGATATAATAAATTTTATGCTCATATCACCTTACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGGAAAGGATATAATAAATTTTATGCTCATATCACCTTACCTGT  100

seq1  AACAAACCAAAGGAAAGACACAGAGCACCGTGTGCAATGTGCTCACTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCAAAGGAAAGACACAGAGCACCGTGTGCAATGTGCTCACTCTC  150

seq1  CACAGTAAAGAGAGATGGTCAATTACGCTATGAAGATGTAGTTCCAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAGAGAGATGGTCAATTACGCTATGAAGATGTAGTTCCAAGAT  200

seq1  TCAAATGTTCCCTTTCACACACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTCCCTTTCACACACACACACACACACACACACACACACACAC  250

seq1  ACACACACACACTAACATGCACTATTGTTACCCAGGTAGAGAAGTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTAACATGCACTATTGTTACCCAGGTAGAGAAGTCTCCT  300

seq1  AGACTCTAGTCACTAAGCTTTGATGTCAACAAACTCTGGCCTTTTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAGTCACTAAGCTTTGATGTCAACAAACTCTGGCCTTTTCTTGG  350

seq1  CTGGCCTCTTACCCAGGAGTGGATGCATGTGGATGCTGTAATTGAGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTACCCAGGAGTGGATGCATGTGGATGCTGTAATTGAGGTCA  400

seq1  GGGGTGCTAATCTCCCTGAGATGTCTGAACTCTGAGAAGCGCCACCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTAATCTCCCTGAGATGTCTGAACTCTGAGAAGCGCCACCATCA  450

seq1  TTTTTTGCCCATCCTTCCTCTCTCCTGTTCCTTAACAGGAGAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCCCATCCTTCCTCTCTCCTGTTCCTTAACAGGAGAGAGAGAGA  500

seq1  GAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT  550

seq1  GCATTTGCTTTTGTTACAGGCAAATTAACCTGCTGTTGCATTCATTCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTTTTGTTACAGGCAAATTAACCTGCTGTTGCATTCATTCGGG  600

seq1  TCTGTTTTAAACCTCTTCATCATTTAAATTAAAATAAAGCAAAGAATAGA  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGTTTTAAACCTCTTCATCATTTAAATTAAAATAAAGCAAAGTATAGA  650

seq1  AAGAGAAGTTTGCCATTTCTCATTTAAATCAGTTATCCAGGAACAAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTTTGCCATTTCTCATTTAAATCAGTTATCCAGGAACAAAGTG  700

seq1  AATTTCTTCAATATTGTAAGGTTCACACAGGGAACGCTGAGGGATCTTTT  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTCAATTTTGTAAGGTTCACACAGGGAACGCTGAGGGATCTTTT  750

seq1  CAGGAAAAGACTGTTGGTTAAGTCCTTTGTCATATTATGAGCACATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGACTGTTGGTTAAGTCCTTTGTCATATTATGAGCACATTTTA  800

seq1  AAATAATAAAAATGATC-TTTAATCC-TGATTTAACATAATTTCTAATAA  848
      ||||||||||||||||| |||||||| |||||| ||||||||||||   |
seq2  AAATAATAAAAATGATCTTTTAATCCTTGATTTTACATAATTTCTA--TA  848

seq1  ATTCAAACATATA-TTTGTTCCTCATTGAATTTTAATGTCAGTATTTTGT  897
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACATATATTTTGTTCCTCATTGAATTTTAATGTCAGTATTTTGT  898

seq1  AAATGAAATGCCAGTATTTTCTAATTGGTTCTCTGCTGATTTTTTTTTTT  947
       ||||||||| ||||| ||||| |||||||||||||||||||||||||| 
seq2  -AATGAAATG-CAGTA-TTTCT-ATTGGTTCTCTGCTGATTTTTTTTTT-  943

seq1  TAATCATCAACTGTATGATACATTTTGGGAGTTCAGAGGAGGGAGTACAC  997
        |||||||||||||||||||  |||||||||||||||||||| ||||||
seq2  --ATCATCAACTGTATGATAC--TTTGGGAGTTCAGAGGAGGGGGTACAC  989

seq1  ACACATTGCTTTCTGTCATTTTTTTAAGTCCCCCCTAATGAATTCTTAAT  1047
      |||| |||||||||| ||||||||  ||| || ||||||| ||| |||||
seq2  ACAC-TTGCTTTCTG-CATTTTTT--AGT-CCTCCTAATG-ATTTTTAAT  1033

seq1  TACATTATTCAAAAGATCCATTATTCAGCATTCATCTCGCTGCTAAATGA  1097
      |    ||||| ||||||||||   ||||  ||| || ||||| |||| ||
seq2  T---CTATTC-AAAGATCCAT--ATCAG-TTTCTTC-CGCTG-TAAA-GA  1073

seq1  AAGTCTTTACCTGACATGTGAATGAAATGAGTCTGAATGCTTTCAATGCC  1147
      || ||||| |||   |||  |  | || || |||||||||||||||||||
seq2  AA-TCTTT-CCTCGTATGGTATAGGAAAGA-TCTGAATGCTTTCAATGCC  1120

seq1  AC  1149
       |
seq2  CC  1122

seq1: chr6_16773787_16774866
seq2: B6Ng01-021I19.g_68_1141 (reverse)

seq1  ATTTCTATATATACAGAAGATATGGATACTTAGTCTTCTAAGTCTTCTTA  50
      || ||||||||||||||   |||| |||  ||||| ||||||||||||  
seq2  ATATCTATATATACAGAGAGTATGAATA--TAGTC-TCTAAGTCTTCT--  45

seq1  TTTTTCTGTCATTACCTAGAAGAAAATACTC-TGCATGTAGTTCTGTATT  99
       |||||||||||||||||||||||||  | | ||||||||||||||||| 
seq2  ATTTTCTGTCATTACCTAGAAGAAAAATCACTTGCATGTAGTTCTGTATA  95

seq1  ATATATACTAATATTTAAAAGTAATCCATTCTTACAATATTTTTCCATAT  149
      | | ||||||||| |||||||||||||| |||  ||||||||||||||||
seq2  AAAAATACTAATA-TTAAAAGTAATCCA-TCTACCAATATTTTTCCATAT  143

seq1  CAGACCACAGTTCTCTCATATTCTTTTTTCA-CACCAGATACAATATCCC  198
      |||||||||| ||||||| |||||||||||| ||||||||||||||||||
seq2  CAGACCACAG-TCTCTCA-ATTCTTTTTTCACCACCAGATACAATATCCC  191

seq1  ACACAAAGGACAGTCTATGTTTCATACTATTGGATATCTGGTCTCTATCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGACAGTCTATGTTTCATACTATTGGATATCTGGTCTCTATCT  241

seq1  GAAACCATTCCAAAACTGTCTGGGAGATCCGGCATGGCTGCATAAGAGGA  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATTCC-AAACTGTCTGGGAGATCCGGCATGGCTGCATAAGAGGA  290

seq1  GCTATAACACCATTTCTGCCCCTGGAGCTTCGGCAGGCTGTTGATCCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAACACCATTTCTGCCCCTGGAGCTTCGGCAGGCTGTTGATCCCTG  340

seq1  TGTTTAGTGATGGTTGCTGCTGCTCTG-AAACCCATCTAATGTCTCATCT  397
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTTTAGTGATGGTTGCTGCTGCTCTGAAAACCCATCTAATGTCTCATCT  390

seq1  TTTTACTTTC-AATCTCTCTTTTTGGGGAATATAGTTCTCTCATTGCTCA  446
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCAAATCTCTCTTTTTGGGGAATATAGTTCTCTCATTGCTCA  440

seq1  GAGCTAATCACTCTATAACAAATGAAACAGATATAGTTCTCAGGAATGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATCACTCTATAACAAATGAAACAGATATAGTTCTCAGGAATGAG  490

seq1  GAATGAAGTGGTCATGAGGCTGTGGGGGATGAGGAGCATGCCTTCTGCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGTGGTCATGAGGCTGTGGGGGATGAGGAGCATGCCTTCTGCTT  540

seq1  GGTCTTTAGAGCCATGGGAAAGGATCTAGACAACATAACCACAGAGGCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAGAGCCATGGGAAAGGATCTAGACAACATAACCACAGAGGCCA  590

seq1  TGAAAGACTACATGGTCCTTTGTAGAAATAGTGCATTGTCAGACTTGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTACATGGTCCTTTGTAGAAATAGTGCATTGTCAGACTTGGCC  640

seq1  TAGAATTTGGAATTTTTACTTATTTATTTATTTATTAGGTATTTTCCTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTGGAATTTTTACTTATTTATTTATTTATTAGGTATTTTCCTCA  690

seq1  TTTACATTTCTAGTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCTAGTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAA  740

seq1  CTCCACATAAAACCAGAGACACTGAAACTTATAGAGGGAAAAGCCTCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATAAAACCAGAGACACTGAAACTTATAGAGGGAAAAGCCTCAAA  790

seq1  GATATGGGCACATGGGGAAAAATTCCTAAAAAGAACTGCAATGGCTTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGCACATGGGGAAAAATTCCTAAAAAGAACTGCAATGGCTTGTG  840

seq1  CTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTC  890

seq1  TGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTG  940

seq1  GGAAAGGATATTTACCTATCCCAAATCAGATAGGGGACTAATATCCAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATATTTACCTATCCCAAATCAGATAGGGGACTAATATCCAATA  990

seq1  TATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCA  1040

seq1  TTAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  1080
      ||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  1074