BAC Information

Click to search

BAC

Clone NameB6Ng01-021J12
Chromosome6 (Build37)
Map Location 99,792,013 - 99,933,426
singlet/doubletdoublet
Overlap geneLOC100043703
Upstream geneLOC665979, Foxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J12.bB6Ng01-021J12.g
ACCDH854054DH854055
length8891,078
definitionDH854054|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J12, 5' end.DH854055|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,932,836 - 99,933,426)(99,792,013 - 99,793,098)
sequence
gaattcacctaacttaccagacgaatgaagtcacaaagtcacaagagtgg
aagtctcctccttgatctttagctaagtgcaatggtggctaaggagagga
gatcttttcagtgtacccagctgcctgagttgtgctggaaccccagggat
gtagattttctaagtggttgcccatgactgggtgggctctcagtgatgca
actgcctgtgagtcaccccaggaaacttactgcactaagctggacctgca
tggaagggtttttggatctgtccttggtgccctgtttggggtgaatgggt
atttgttcacacctcccccaggaaaagccacaggacatactgtacctagg
ggcagctgactaactactcactggcttctttcccaggtacacagatgaca
agaatctgtacccccatttagaatctacccgagtcttactcccatctaaa
tgagatgagatgatgatatttgagagttgactgttgagtccaaggtgaga
ctcgggacttgaaccggtgctggaatgtgctgggcgttctgaggaatggg
accagtgaggctgagacaccggcaaatcctgggggatcagaatgccttat
atggtaaagtgggctttgtggttatgaccgaagtaggactcttgagatag
tagatgaccatagtgcacccaatatttaactcaagaatccttgcaagagg
gaggcatgactgctcatagtaaggaatggagagaagaaagatgctgtatg
cctggctggtggcttgcaagatgaagtgggggatgcaggaagcttctgga
tcttggaagaacaaggacagattctctgtagtttccagaagaaaggcaaa
cctgccaacaccttcactcactcattcacttttgactct
gaattccacacccgcaacacctctggctacagagaccattcctcagtggc
tacacagctgctccagcagtctctgaacaagacccacacaaggtgttcca
cgtggttcatgatctctgaaggatgtcccttcagtttcaaatgactgggt
ttgttaagcatgtagcaagcaaaaggaaaagaaggcatagcaagaagtgg
atagaaggaagcagcagggagatggcatggcaccatcaaaaggggtgctt
aggacacccagcagagatgacccgctgcagcctagtggaaagaaaaaaca
acatcaacatcagcagctttcagcgtccagaggaaagcctccatgaggca
gacagagtttctaactgaggtctttctcttcatgggtgaatcgccggctt
cttgttcccatggggaattttataccgcgaattaaacaatagtatctatc
tgttgtaaaaggtaccatgtattccctcttaaggctgtgttactgtttct
cctctctccttgtcacagggttaggggctagcccatcaccccttcaacca
aaggccttggaggatacctcaaagcaaaggggcagaggtgtcctcagtcc
agagccagcttctcagtaagtggaaacagcagtttaccaatccaggctgt
tacacacagctgggctgagggctggagcagcaggagaagctggatcaagc
atgctccaagcatgcaaggcaagcaagcactctcccactgagccacaccc
ccaccccttttggcctgctctgatgctgctggggtgacacaaggcatgac
tacaggactagtctcatggatcatggtgcagatcagcctgagtgccactg
accctgagtctatggatcaattgttcatgtctgtgttactatttgataca
ttcccacataggctgggacattgagtgacaccactacagagtcataccta
ttgccagaggtcactggactgctatgtctgagtctcaatttcctctgttt
gagactgctgatcaattactacttcctgagagcccagatgctaagtatgg
ggtaaaaattaagttgttagctggtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99932836_99933426
seq2: B6Ng01-021J12.b_46_636 (reverse)

seq1  TCTGATCCCCCAGGATTTGCCGGTGTCTCAGCCTCACTGGTCCCATTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCCCCAGGATTTGCCGGTGTCTCAGCCTCACTGGTCCCATTCCT  50

seq1  CAGAACGCCCAGCACATTCCAGCACCGGTTCAAGTCCCGAGTCTCACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGCCCAGCACATTCCAGCACCGGTTCAAGTCCCGAGTCTCACCTT  100

seq1  GGACTCAACAGTCAACTCTCAAATATCATCATCTCATCTCATTTAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAACAGTCAACTCTCAAATATCATCATCTCATCTCATTTAGATGG  150

seq1  GAGTAAGACTCGGGTAGATTCTAAATGGGGGTACAGATTCTTGTCATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGACTCGGGTAGATTCTAAATGGGGGTACAGATTCTTGTCATCTG  200

seq1  TGTACCTGGGAAAGAAGCCAGTGAGTAGTTAGTCAGCTGCCCCTAGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGGGAAAGAAGCCAGTGAGTAGTTAGTCAGCTGCCCCTAGGTAC  250

seq1  AGTATGTCCTGTGGCTTTTCCTGGGGGAGGTGTGAACAAATACCCATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCCTGTGGCTTTTCCTGGGGGAGGTGTGAACAAATACCCATTCA  300

seq1  CCCCAAACAGGGCACCAAGGACAGATCCAAAAACCCTTCCATGCAGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACAGGGCACCAAGGACAGATCCAAAAACCCTTCCATGCAGGTCC  350

seq1  AGCTTAGTGCAGTAAGTTTCCTGGGGTGACTCACAGGCAGTTGCATCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTGCAGTAAGTTTCCTGGGGTGACTCACAGGCAGTTGCATCACT  400

seq1  GAGAGCCCACCCAGTCATGGGCAACCACTTAGAAAATCTACATCCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCCACCCAGTCATGGGCAACCACTTAGAAAATCTACATCCCTGGG  450

seq1  GTTCCAGCACAACTCAGGCAGCTGGGTACACTGAAAAGATCTCCTCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCACAACTCAGGCAGCTGGGTACACTGAAAAGATCTCCTCTCCT  500

seq1  TAGCCACCATTGCACTTAGCTAAAGATCAAGGAGGAGACTTCCACTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCATTGCACTTAGCTAAAGATCAAGGAGGAGACTTCCACTCTTG  550

seq1  TGACTTTGTGACTTCATTCGTCTGGTAAGTTAGGTGAATTC  591
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGTGACTTCATTCGTCTGGTAAGTTAGGTGAATTC  591

seq1: chr6_99792013_99793098
seq2: B6Ng01-021J12.g_68_1145

seq1  GAATTCCACACCCGCAACACCTCTGGCTACAGAGACCATTCCTCAGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCGCAACACCTCTGGCTACAGAGACCATTCCTCAGTGGC  50

seq1  TACACAGCTGCTCCAGCAGTCTCTGAACAAGACCCACACAAGGTGTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCTGCTCCAGCAGTCTCTGAACAAGACCCACACAAGGTGTTCCA  100

seq1  CGTGGTTCATGATCTCTGAAGGATGTCCCTTCAGTTTCAAATGACTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTCATGATCTCTGAAGGATGTCCCTTCAGTTTCAAATGACTGGGT  150

seq1  TTGTTAAGCATGTAGCAAGCAAAAGGAAAAGAAGGCATAGCAAGAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGCATGTAGCAAGCAAAAGGAAAAGAAGGCATAGCAAGAAGTGG  200

seq1  ATAGAAGGAAGCAGCAGGGAGATGGCATGGCACCATCAAAAGGGGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGAAGCAGCAGGGAGATGGCATGGCACCATCAAAAGGGGTGCTT  250

seq1  AGGACACCCAGCAGAGATGACCCGCTGCAGCCTAGTGGAAAGAAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCCAGCAGAGATGACCCGCTGCAGCCTAGTGGAAAGAAAAAACA  300

seq1  ACATCAACATCAGCAGCTTTCAGCGTCCAGAGGAAAGCCTCCATGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACATCAGCAGCTTTCAGCGTCCAGAGGAAAGCCTCCATGAGGCA  350

seq1  GACAGAGTTTCTAACTGAGGTCTTTCTCTTCATGGGTGAATCGCCGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTTTCTAACTGAGGTCTTTCTCTTCATGGGTGAATCGCCGGCTT  400

seq1  CTTGTTCCCATGGGGAATTTTATACCGCGAATTAAACAATAGTATCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCCATGGGGAATTTTATACCGCGAATTAAACAATAGTATCTATC  450

seq1  TGTTGTAAAAGGTACCATGTATTCCCTCTTAAGGCTGTGTTACTGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAAAAGGTACCATGTATTCCCTCTTAAGGCTGTGTTACTGTTTCT  500

seq1  CCTCTCTCCTTGTCACAGGGTTAGGGGCTAGCCCATCACCCCTTCAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCTTGTCACAGGGTTAGGGGCTAGCCCATCACCCCTTCAACCA  550

seq1  AAGGCCTTGGAGGATACCTCAAAGCAAAGGGGCAGAGGTGTCCTCAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTGGAGGATACCTCAAAGCAAAGGGGCAGAGGTGTCCTCAGTCC  600

seq1  AGAGCCAGCTTCTCAGTAAGTGGAAACAGCAGTTTACCAATCCAGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGCTTCTCAGTAAGTGGAAACAGCAGTTTACCAATCCAGGCTGT  650

seq1  TACACACAGCTGGGCTGAGGGCTGGAGCAGCAGGAGAAGCTGGATCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGCTGGGCTGAGGGCTGGAGCAGCAGGAGAAGCTGGATCAAGC  700

seq1  ATGCTCCAAGCATGCAAGGCAAGCAAGCACTCTCCCACTGAGCCACACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAAGCATGCAAGGCAAGCAAGCACTCTCCCACTGAGCCACACCC  750

seq1  CCACCCCTTTTGGCCTGCTCTGATGCTGCTGGGGTGACACAAGGCATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTTTTGGCCTGCTCTGATGCTGCTGGGGTGACACAAGGCATGAC  800

seq1  TACAGGACTAGTCTCATGGATCATGGTGCAGATCAGCCTGAGTGCCACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACTAGTCTCATGGATCATGGTGCAGATCAGCCTGAGTGCCACTG  850

seq1  ACCCTGAGTCTATGGATCAATTGTTCATGTCTGTGTTACTATATTGATAC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCCTGAGTCTATGGATCAATTGTTCATGTCTGTGTTACTAT-TTGATAC  899

seq1  ATTCCAACATAGGCTGGGACAATGAGTGACACCACTACAGAGGTCATACC  950
      ||||| ||||||||||||||| ||||||||||||||||||| ||||||||
seq2  ATTCCCACATAGGCTGGGACATTGAGTGACACCACTACAGA-GTCATACC  948

seq1  TATGCCCAGAGGGTCACTGGACTGCTATGTCTGAGTCTCAATTT-CTCTG  999
      |||  ||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TATTGCCAGA-GGTCACTGGACTGCTATGTCTGAGTCTCAATTTCCTCTG  997

seq1  TTTGTAGACTGCTGATCAATTACCTACTTCCTGAGAAGCCCAGATGGTTA  1049
      |||| ||||||||||||||||| |||||||||||| ||||||||| | ||
seq2  TTTG-AGACTGCTGATCAATTA-CTACTTCCTGAG-AGCCCAGAT-GCTA  1043

seq1  AGTAAGGGGGGAAAAAATCAAGTGGTTAGCTGGTAGC  1086
      ||||   |||| |||||| |||| |||||||||||||
seq2  AGTA--TGGGGTAAAAATTAAGTTGTTAGCTGGTAGC  1078