BAC Information

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BAC

Clone NameB6Ng01-021M10
Chromosome6 (Build37)
Map Location 21,460,751 - 21,568,331
singlet/doubletdoublet
Overlap geneKcnd2
Upstream geneLOC100041343
Downstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M10.bB6Ng01-021M10.g
ACCDH854187DH854188
length1,0921,145
definitionDH854187|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M10, 5' end.DH854188|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,460,751 - 21,461,859)(21,567,147 - 21,568,331)
sequence
gaattccagtgaacacacagtgcactgaatgtttatgctgaggaatgttg
acccatttggaaacatgagttctggcaagcgttctgcctgttttcttctc
tattgtgggtagatactcacaatctaagctttagtataggttcaaagtag
gcaatgtaaatgtgggcttaagtgaaagagatattttcctagtagcttat
tcagcagtggaattgaattattacaatgtgaaagatgccaggatttcaga
tgtacttgggccatttcaccttcaccctgttcttctcttctagaaagctt
ttcatggcagctctccaactacttttcttccagttgaatttgaaatgctc
tattaccttggctaaatttcaactatgtcagtaaaaatcccaaagagcaa
atcaaactagcagcaaaagtgcctttcttaaataaacagattgctgaccc
ccaagcaggagaagaggcattctgccatgggattatttcatagtcagttt
taataaatacagtcttttattgtgcacaggctttcaattgctaactcaag
ttgaaactcagtttaaactagacacccttctcctaggactgaaggcagtc
cacagctgtaattatgaagcacactccttgtgctggtgtgtggccatcac
agatattcttcactggagaataccaaaaaagagaccttcttgaactctag
tcccttgataactaatcaggtctggatttgtcttgttcatgatgacttcc
ttaatatgtgtattttttttttctatcctgtggcaagtatattgtaagaa
gtagtttatgactattacagccaatgttctcattgtagctttatactaca
atggggggggatcacttctacagcccttgatactttagaatctgtgaagg
ttttctctaatgttccatcattggctatgtctctaggatgtgtcttctat
cctacttcatggggtttccccacacttccctggataggtcaatacctata
accatttgcaatgtcttcaactaatcaaaatattcacagttactccatta
ttatctttcttctacatctctgctgggttatattcagcgcag
gaattcaaaatagtaaaatatttgaggacatagtctatagaattaaatcc
tcaatgttccaatcctgagtctaatataaaaaataattctgagaaaacat
ctatgctttttaaacttcttttctctcatctctccatcatgaaataatag
caatcattgaggtttacagggtggagataaaggtgataattctcattaat
acatgcatatgggaattgtgatgaaccaacatgggttacactttcttgcc
caaagaaataatagatctttttccaaacgtctgttgctctttctggatca
tacattaaatgctttctttacacttggtttccctccccaagaacacattg
ttgagtaaggttatatcttgatattctgatcctcatgggaaatgcagttt
tatatccatgaaaaatagcttctttccattattcttatttgagatataca
taccacttttgcataaatagaaactgataaccagtatgactgctctataa
atattcctactaagtagaatagtacaattatcaatagtgaccacttggct
atttgatttcaaataaaactaatatctttagctatatctattacgttctt
acttcctctaaaaggatgagacatgcctctgaataagaaatagcaataat
tcatgattttacatgtgtgacttgccatgggtaatcaatgtactataaac
agaggaatccattttccttgcagcaagactggtagtaaagactgtatcag
tttttaaagctgtcttacagattagacaggcagatactgcttctaaccca
gagcctttctaatcttcaaagctacctaaaaggtagtggtagaattcgta
aacccagttcttcacaatacagccttatgtctcattttcttcatcgggga
aatgcaaatattatcttgtaatgttctgagattagtggtttaatttatgt
atgtggtcatttacagatgatatagtaaatcatagttgtcatacatagtg
actcaggaccagttatttttttttaccattataggtagtacatattattt
catttcttatgaaatggattttcaacaaataatttgatgatcctcttcca
attcctaagtttcccacattctcctctgttccacactatcctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21460751_21461859
seq2: B6Ng01-021M10.b_43_1134

seq1  GAATTCCAGTGAACACACAGTGCACTGAATGTTTATGCTGAGGAATGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAACACACAGTGCACTGAATGTTTATGCTGAGGAATGTTG  50

seq1  ACCCATTTGGAAACATGAGTTCTGGCAAGCGTTCTGCCTGTTTTCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTGGAAACATGAGTTCTGGCAAGCGTTCTGCCTGTTTTCTTCTC  100

seq1  TATTGTGGGTAGATACTCACAATCTAAGCTTTAGTATAGGTTCAAAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGGTAGATACTCACAATCTAAGCTTTAGTATAGGTTCAAAGTAG  150

seq1  GCAATGTAAATGTGGGCTTAAGTGAAAGAGATATTTTCCTAGTAGCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAAATGTGGGCTTAAGTGAAAGAGATATTTTCCTAGTAGCTTAT  200

seq1  TCAGCAGTGGAATTGAATTATTACAATGTGAAAGATGCCAGGATTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTGGAATTGAATTATTACAATGTGAAAGATGCCAGGATTTCAGA  250

seq1  TGTACTTGGGCCATTTCACCTTCACCCTGTTCTTCTCTTCTAGAAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGGGCCATTTCACCTTCACCCTGTTCTTCTCTTCTAGAAAGCTT  300

seq1  TTCATGGCAGCTCTCCAACTACTTTTCTTCCAGTTGAATTTGAAATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCAGCTCTCCAACTACTTTTCTTCCAGTTGAATTTGAAATGCTC  350

seq1  TATTACCTTGGCTAAATTTCAACTATGTCAGTAAAAATCCCAAAGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTTGGCTAAATTTCAACTATGTCAGTAAAAATCCCAAAGAGCAA  400

seq1  ATCAAACTAGCAGCAAAAGTGCCTTTCTTAAATAAACAGATTGCTGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTAGCAGCAAAAGTGCCTTTCTTAAATAAACAGATTGCTGACCC  450

seq1  CCAAGCAGGAGAAGAGGCATTCTGCCATGGGATTATTTCATAGTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGGAGAAGAGGCATTCTGCCATGGGATTATTTCATAGTCAGTTT  500

seq1  TAATAAATACAGTCTTTTATTGTGCACAGGCTTTCAATTGCTAACTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATACAGTCTTTTATTGTGCACAGGCTTTCAATTGCTAACTCAAG  550

seq1  TTGAAACTCAGTTTAAACTAGACACCCTTCTCCTAGGACTGAAGGCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCAGTTTAAACTAGACACCCTTCTCCTAGGACTGAAGGCAGTC  600

seq1  CACAGCTGTAATTATGAAGCACACTCCTTGTGCTGGTGTGTGGCCATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGTAATTATGAAGCACACTCCTTGTGCTGGTGTGTGGCCATCAC  650

seq1  AGATATTCTTCACTGGAGAATACCAAAAAAGAGACCTTCTTGAACTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCTTCACTGGAGAATACCAAAAAAGAGACCTTCTTGAACTCTAG  700

seq1  TCCCTTGATAACTAATCAGGTCTGGATTTGTCTTGTTCATGATGACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGATAACTAATCAGGTCTGGATTTGTCTTGTTCATGATGACTTCC  750

seq1  TTAATATGTGTATTTTTTTTTTCTATCCTGTGGCAAGTATATTGTAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGTGTATTTTTTTTTTCTATCCTGTGGCAAGTATATTGTAAGAA  800

seq1  GGTAGTTTATGACTATTACAGCCAATGTTCTCATTGTAGCTTTATACTAC  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTAGTTTATGACTATTACAGCCAATGTTCTCATTGTAGCTTTATACTAC  849

seq1  AATGGGGGGGGATCACTTCTACAGCCCTTGATACTTTAGAATCTGTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGGGATCACTTCTACAGCCCTTGATACTTTAGAATCTGTGAAG  899

seq1  GTTTTCTTCTAATGTTCCATCATTGGCTATGTCTTCTAGGAATGTGTCTT  950
      |||||| |||||||||||||||||||||||||| |||||| |||||||||
seq2  GTTTTC-TCTAATGTTCCATCATTGGCTATGTC-TCTAGG-ATGTGTCTT  946

seq1  CTATCCTACTTCATGGGGTTTCCCCACACTTCCCTGGATAAGGTCAATAC  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATCCTACTTCATGGGGTTTCCCCACACTTCCCTGGAT-AGGTCAATAC  995

seq1  CTATAACCATTTGCAATGTCTCCAAAACTTATTTCAAAAATATTCAACAG  1050
      ||||||||||||||||||||| |  |||| ||    ||||||||| ||||
seq2  CTATAACCATTTGCAATGTCTTC--AACTAAT---CAAAATATTC-ACAG  1039

seq1  TCTACTACCATTTATTATCTTTCTTCTTTACCATCTCTGCTGGGTTATTA  1100
      | |||| ||| ||||||||||||||||    |||||||||||||||| ||
seq2  T-TACT-CCA-TTATTATCTTTCTTCT---ACATCTCTGCTGGGTTA-TA  1082

seq1  TTCAG-GCAG  1109
      ||||| ||||
seq2  TTCAGCGCAG  1092

seq1: chr6_21567147_21568331
seq2: B6Ng01-021M10.g_67_1211 (reverse)

seq1  GACAGAATAGCTGTGGAACCAGATAGAAGAAATGGTGGAGAAAAACTTAG  50
      ||||| |||| ||||||||     ||| || |  ||||    ||||||||
seq2  GACAGGATAG-TGTGGAAC-----AGAGGAGAATGTGG---GAAACTTAG  41

seq1  AGAATATGGGAAGAGGATACCAAATCAGAATATATTGTATGAAAAATCCA  100
       ||  || ||||||||||     |||| | ||| |||| || ||||||||
seq2  -GA--ATTGGAAGAGGAT----CATCAAATTAT-TTGT-TG-AAAATCCA  81

seq1  TTTTCAATAAAAGAAAATGAAAAATAATAATGTACTACCTATAATTGGTA  150
      |||   ||||    |||||  ||||||| ||||||||||||||| |||| 
seq2  TTT--CATAA---GAAATG--AAATAAT-ATGTACTACCTATAA-TGGT-  121

seq1  AAAAAAAAATAACTGGTTCTTGAAGTCACTAATGTATTGACAACTATGAT  200
      ||||||||||||||||| ||   ||||||| ||||| |||||||||||||
seq2  AAAAAAAAATAACTGGTCCT--GAGTCACT-ATGTA-TGACAACTATGAT  167

seq1  TTACTTATTATCATCTGTAAAATGACCACAATACATAAATTAAACCACTA  250
      |||||   |||||||||| |||||||||| ||||||||||||||||||||
seq2  TTACT--ATATCATCTGT-AAATGACCAC-ATACATAAATTAAACCACTA  213

seq1  ATCCTCAGAACATTACAAGATAATATTTTGCATTTCCCCGATGAAGAAAA  300
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AT-CTCAGAACATTACAAGATAATA-TTTGCATTTCCCCGATGAAGAAAA  261

seq1  TGGAGACATAAGGCTGTATTGTGAAGAACTGGGTTTACGAATTCTACCAC  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GAGACATAAGGCTGTATTGTGAAGAACTGGGTTTACGAATTCTACCAC  310

seq1  TACCTTTTAGGTAGCTTTGAAGATTAGAAAGGCTCTGGGTTAGAAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTAGGTAGCTTTGAAGATTAGAAAGGCTCTGGGTTAGAAGCAGT  360

seq1  ATCTGCCTGTCTAATCTGTAAGACAGCTTTAAAAACTGATACAGTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGTCTAATCTGTAAGACAGCTTTAAAAACTGATACAGTCTTTA  410

seq1  CTACCAGTCTTGCTGCAAGGAAAATGGATTCCTCTGTTTATAGTACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGTCTTGCTGCAAGGAAAATGGATTCCTCTGTTTATAGTACATTG  460

seq1  ATTACCCATGGCAAGTCACACATGTAAAATCATGAATTATTGCTATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCATGGCAAGTCACACATGTAAAATCATGAATTATTGCTATTTCT  510

seq1  TATTCAGAGGCATGTCTCATCCTTTTAGAGGAAGTAAGAACGTAATAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGGCATGTCTCATCCTTTTAGAGGAAGTAAGAACGTAATAGAT  560

seq1  ATAGCTAAAGATATTAGTTTTATTTGAAATCAAATAGCCAAGTGGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAAGATATTAGTTTTATTTGAAATCAAATAGCCAAGTGGTCACT  610

seq1  ATTGATAATTGTACTATTCTACTTAGTAGGAATATTTATAGAGCAGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATTGTACTATTCTACTTAGTAGGAATATTTATAGAGCAGTCAT  660

seq1  ACTGGTTATCAGTTTCTATTTATGCAAAAGTGGTATGTATATCTCAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTATCAGTTTCTATTTATGCAAAAGTGGTATGTATATCTCAAATA  710

seq1  AGAATAATGGAAAGAAGCTATTTTTCATGGATATAAAACTGCATTTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATGGAAAGAAGCTATTTTTCATGGATATAAAACTGCATTTCCCA  760

seq1  TGAGGATCAGAATATCAAGATATAACCTTACTCAACAATGTGTTCTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCAGAATATCAAGATATAACCTTACTCAACAATGTGTTCTTGGG  810

seq1  GAGGGAAACCAAGTGTAAAGAAAGCATTTAATGTATGATCCAGAAAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAACCAAGTGTAAAGAAAGCATTTAATGTATGATCCAGAAAGAGC  860

seq1  AACAGACGTTTGGAAAAAGATCTATTATTTCTTTGGGCAAGAAAGTGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACGTTTGGAAAAAGATCTATTATTTCTTTGGGCAAGAAAGTGTAA  910

seq1  CCCATGTTGGTTCATCACAATTCCCATATGCATGTATTAATGAGAATTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTGGTTCATCACAATTCCCATATGCATGTATTAATGAGAATTAT  960

seq1  CACCTTTATCTCCACCCTGTAAACCTCAATGATTGCTATTATTTCATGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTATCTCCACCCTGTAAACCTCAATGATTGCTATTATTTCATGAT  1010

seq1  GGAGAGATGAGAGAAAAGAAGTTTAAAAAGCATAGATGTTTTCTCAGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGAGAGAAAAGAAGTTTAAAAAGCATAGATGTTTTCTCAGAAT  1060

seq1  TATTTTTTATATTAGACTCAGGATTGGAACATTGAGGATTTAATTCTATA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATATTAGACTCAGGATTGGAACATTGAGGATTTAATTCTATA  1110

seq1  GACTATGTCCTCAAATATTTTACTATTTTGAATTC  1185
      |||||||||||||||||||||||||||||||||||
seq2  GACTATGTCCTCAAATATTTTACTATTTTGAATTC  1145