BAC Information

Click to search

BAC

Clone NameB6Ng01-022J02
Chromosome6 (Build37)
Map Location 124,231,218 - 124,363,302
singlet/doubletdoublet
Overlap geneEG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5
Upstream geneClec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374
Downstream geneClstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022J02.bB6Ng01-022J02.g
ACCDH854741DH854742
length1,041271
definitionDH854741|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J02, 5' end.DH854742|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,231,218 - 124,232,258)(124,363,032 - 124,363,302)
sequence
gaattctgagaatatcaatatcttatattaccatccaagttccaaataag
acatttaaccctttgagggccagagtcctacattttatgtttctcatagt
tgttaacgtgaattaactaacccgtatgaactaatctgaaggatgaatgg
atgaatatgtccaaaaaggaatgtgttccttttgtacacatttggacatt
atcttctagcaagattcaaatgagggaatagatacaaaatatctttaaaa
taaaaaattggaaattaacatatactcttgttaattaaaaatttattcag
aacttaatattaactattagccttaaaaatgattgttatattgaatgagt
attagttttgtataaattttgttttcataattttataaaactttttataa
ttttataaagcttctggggtttatatttatactacatgtttatttatgtt
gacatctcttgtggttctccgtaggaatttttatggcagagtcttactta
tataatttatacctgtatccttctttaaaatattatgtgcctttttgctt
aatttctgaaagtttcatggactttaactacttatttaataaacatctgt
caaattattaatatattaatgaagttacatgttagtatctatctgtgaaa
tatttatatcttgacttcagaattggaatattagttttttctataatatt
ttcataattcaaacagttttatatttatagcaaaattgtcatctcaacat
acatattttattcttataaagggtaatatttgaattatatttaaaatatc
aactacattgtaagtatattaaaatgttaatataatttaatatcttaaat
aaactcagattttagttgaaagtttcaatacttgaaaagaaagtccagaa
tattaaaattgtggttttcacaggacataaattaaaattcatgcctatta
ccccagcatttcgatttggaggaagaggagttcaggaattcaaggtcatc
cttggctctaagagagtcaaggccagcctagatatatgctt
atcgccgaagttacaggtgaggcttgtggggacatctgtagtagttgtta
gggagcatttacatgtcctgtgttgctgggcgtcctgattcctcttggga
tggaaggtgattttcgctactaatgacttttctagtttcttgattcattt
ctgtaggatgttaaatgtgacttcttataacaattgtaggtaatcaaaac
ataataaagagaaaagtgggtttggttggaaaaaaaagagagggggtgga
gagggagagagagaatatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124231218_124232258
seq2: B6Ng01-022J02.b_43_1083

seq1  GAATTCTGAGAATATCAATATCTTATATTACCATCCAAGTTCCAAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAATATCAATATCTTATATTACCATCCAAGTTCCAAATAAG  50

seq1  ACATTTAACCCTTTGAGGGCCAGAGTCCTACATTTTATGTTTCTCATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACCCTTTGAGGGCCAGAGTCCTACATTTTATGTTTCTCATAGT  100

seq1  TGTTAACGTGAATTAACTAACCCGTATGAACTAATCTGAAGGATGAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACGTGAATTAACTAACCCGTATGAACTAATCTGAAGGATGAATGG  150

seq1  ATGAATATGTCCAAAAAGGAATGTGTTCCTTTTGTACACATTTGGACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGTCCAAAAAGGAATGTGTTCCTTTTGTACACATTTGGACATT  200

seq1  ATCTTCTAGCAAGATTCAAATGAGGGAATAGATACAAAATATCTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAGCAAGATTCAAATGAGGGAATAGATACAAAATATCTTTAAAA  250

seq1  TAAAAAATTGGAAATTAACATATACTCTTGTTAATTAAAAATTTATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTGGAAATTAACATATACTCTTGTTAATTAAAAATTTATTCAG  300

seq1  AACTTAATATTAACTATTAGCCTTAAAAATGATTGTTATATTGAATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATATTAACTATTAGCCTTAAAAATGATTGTTATATTGAATGAGT  350

seq1  ATTAGTTTTGTATAAATTTTGTTTTCATAATTTTATAAAACTTTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTTGTATAAATTTTGTTTTCATAATTTTATAAAACTTTTTATAA  400

seq1  TTTTATAAAGCTTCTGGGGTTTATATTTATACTACATGTTTATTTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAGCTTCTGGGGTTTATATTTATACTACATGTTTATTTATGTT  450

seq1  GACATCTCTTGTGGTTCTCCGTAGGAATTTTTATGGCAGAGTCTTACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTCTTGTGGTTCTCCGTAGGAATTTTTATGGCAGAGTCTTACTTA  500

seq1  TATAATTTATACCTGTATCCTTCTTTAAAATATTATGTGCCTTTTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATACCTGTATCCTTCTTTAAAATATTATGTGCCTTTTTGCTT  550

seq1  AATTTCTGAAAGTTTCATGGACTTTAACTACTTATTTAATAAACATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAAAGTTTCATGGACTTTAACTACTTATTTAATAAACATCTGT  600

seq1  CAAATTATTAATATATTAATGAAGTTACATGTTAGTATCTATCTGTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATTAATATATTAATGAAGTTACATGTTAGTATCTATCTGTGAAA  650

seq1  TATTTATATCTTGACTTCAGAATTGGAATATTAGTTTTTTCTATAATA-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTTATATCTTGACTTCAGAATTGGAATATTAGTTTTTTCTATAATATT  700

seq1  TTCATAATTCAAACAGTTTTATATTTATAGC-AAATTGTCATCTCAACAT  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCATAATTCAAACAGTTTTATATTTATAGCAAAATTGTCATCTCAACAT  750

seq1  ACATATTTTATTCTTATAAAGGGTAATATTTGAATTATATTTAAAATATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTATTCTTATAAAGGGTAATATTTGAATTATATTTAAAATATC  800

seq1  AACTACATTGTAAGTATATTAAAATGTTAATATAATTTAATATCTTAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTGTAAGTATATTAAAATGTTAATATAATTTAATATCTTAAAT  850

seq1  AAACTCAGA-TTTAGGTGAAAGTTTCAATACTTG-AAAGTAATTCCAGAA  896
      ||||||||| ||||| |||||||||||||||||| |||| || |||||||
seq2  AAACTCAGATTTTAGTTGAAAGTTTCAATACTTGAAAAGAAAGTCCAGAA  900

seq1  TTATTAAAATTGT-GTTTTCACA-GAAATAAAATAAGATTCATGCCTATA  944
       |||||||||||| ||||||||| || ||||| ||| |||||||||||| 
seq2  -TATTAAAATTGTGGTTTTCACAGGACATAAATTAAAATTCATGCCTATT  949

seq1  ACCCCAGCATTTCAGATTTGGAGGCAAGAGGATCTCAGGAATTCAAGGTC  994
      ||||||||||||| |||||||||| |||||||  ||||||||||||||||
seq2  ACCCCAGCATTTC-GATTTGGAGG-AAGAGGAGTTCAGGAATTCAAGGTC  997

seq1  ATCCTTGGCTCTACAGAGAGTTCAAGGCCAGCCTAGACTATATGCTT  1041
      ||||||||||||| |||||| |||||||||||||||| |||||||||
seq2  ATCCTTGGCTCTA-AGAGAG-TCAAGGCCAGCCTAGA-TATATGCTT  1041

seq1: chr6_124363032_124363302
seq2: B6Ng01-022J02.g_72_342 (reverse)

seq1  TTCATATTCTCTCTCTCCCTCTCCACCCCCTCTCTTTTTTTTCCAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCTCTCTCTCCCTCTCCACCCCCTCTCTTTTTTTTCCAACCAA  50

seq1  ACCCACTTTTCTCTTTATTATGTTTTGATTACCTACAATTGTTATAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTTTCTCTTTATTATGTTTTGATTACCTACAATTGTTATAAGAA  100

seq1  GTCACATTTAACATCCTACAGAAATGAATCAAGAAACTAGAAAAGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTTAACATCCTACAGAAATGAATCAAGAAACTAGAAAAGTCATT  150

seq1  AGTAGCGAAAATCACCTTCCATCCCAAGAGGAATCAGGACGCCCAGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCGAAAATCACCTTCCATCCCAAGAGGAATCAGGACGCCCAGCAAC  200

seq1  ACAGGACATGTAAATGCTCCCTAACAACTACTACAGATGTCCCCACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACATGTAAATGCTCCCTAACAACTACTACAGATGTCCCCACAAGC  250

seq1  CTCACCTGTAACTTCGGCGAT  271
      |||||||||||||||||||||
seq2  CTCACCTGTAACTTCGGCGAT  271