BAC Information

Click to search

BAC

Clone NameB6Ng01-023A12
Chromosome6 (Build37)
Map Location 25,217,794 - 25,379,494
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
Downstream geneGpr37, Pot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023A12.bB6Ng01-023A12.g
ACCDH855069DH855070
length1,092879
definitionDH855069|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A12, 5' end.DH855070|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,378,393 - 25,379,494)(25,217,794 - 25,218,672)
sequence
gaattctatctgccattccagagaaaataatagaaataaatgaccaaagg
ccactttcttgaactccagaaactttacaatagaataaattaagactcta
ttttctaatttcaaaactgcattcttgtttctgcggatgccagaaacttt
atctctgtttttttctgcttcaggccaacaagacacaaggttgaacaaaa
aagcatatacacaacaaaaccacaagccttggaaggaaattaatgggcct
tctgcactcattagttttgcagccaacagtagcatatttctcttctgaca
ttttacattgcgcattccttaatgcaaaccagtgacacaatgcttggctt
actgcgttcttatgagaaggaaggtagacaactaggtgaagcatacagaa
gtatcactgcacatgctgcgtattcagaagatgctctctgttcttgtcca
ttttaacttttgacagtcatctgcaggtgagagcccattttctcaaattt
agtgaataatcccattatgattgttatgctatgttcatgtcataatgaac
tatcatttgctagtggctattttcccacatgagaaagcaaacaacccaaa
ttctctaaactttgcgtgttatcatgggtctaggggtggaaactgcagag
accagtgtaaggcaggttaaacactgtgcagacaaaggtcgtactaggat
gctctcactgtcagtttgaatggtctatctaatcgtaatttggtcacctt
tcccaattcttcctcgagagttttcaaatctcacttcatgggctgcataa
aatttacaatcattctggtcattgaacaaagctaagattatttttaaatg
gcttttgtgttctgataactttgtttccatttctttaccaccagctccta
tgtttctacatacctgttccccactggccatcatgagtaactctattatc
ttcatcatgctcctattacacaccataatgtatccggaaaccgttgctgc
aattgtattcatgtggttgataatgtttgagtatttcatcaaacagtgct
tgtcaatgctaacacggggcagatgactcactaccgaagggt
gaattcaaaaaaatggagtgtcattagcttgtgttaacaatttttaatag
agatacatactcagacattcagaaaacctttccccagagccctggcttgt
taataagatttgtacagtgacattgaatagctttgattaagccattatag
ttttatctataataataaattgactcataaaatgtcattttatataaagg
aggctcagcatatatacatatatacatatatatatatatatatatacata
tatatatatataattactttgatttttctcacattaaaggagctcaaaat
gtcacctttttactgtgtaaaattttgtggttaaacagggtatcactgac
ttatccattttctgttggtggatgcttcagtcaccttcactttaaaaaaa
tttagaaatgtccccgaaaacagtatttaatacaagcttcataatttttt
gtgcagatgcgttttagttatgaagtagcagggaaaatattttatgactg
agggtcaccacaacatgaggaactgtattaaagagggtcaaagcattagg
acagttaagaaatactgttacagactgactttctaacaatttctggcatt
gtctcatgggaaactgtgatgctaacatatagctgtaatgttgataacat
ggaaaagatgagtaagggaaacccagtgtttggaaacactaattcagatt
ggacacataaatatccagtgacctggttccaatctagcaccatcttctta
tttcctggcttgctggggacaccaacattaattgtgcctattcttatgtc
ttgtgcttatgtgtgcatgcatgtgtctacatgcctgcatttgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25378393_25379494
seq2: B6Ng01-023A12.b_42_1133 (reverse)

seq1  ACCCTTTCAGTAGCTGAGTCATCTTGCACACCTGT-TTAGCATTTGACTA  49
      |||| ||| |||| ||||||||| |||   || || |||||| ||||| |
seq2  ACCC-TTCGGTAG-TGAGTCATC-TGC---CCCGTGTTAGCA-TTGAC-A  42

seq1  AGCACTGTTCTGATGAAAATACTCAAACATAATCAA-CACATTGAAGTAC  98
      ||||||||| ||||| |||||||||||||| ||||| |||| |||| |||
seq2  AGCACTGTT-TGATG-AAATACTCAAACATTATCAACCACA-TGAA-TAC  88

seq1  AATTGCAGCAACGCTTTCCGGATACA-TATGGTGTGTAATAGGAGCATGA  147
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  AATTGCAGCAACGGTTTCCGGATACATTATGGTGTGTAATAGGAGCATGA  138

seq1  TGAAGATAATAGAGTTACTCATGATGGCCAGTGGGGAACAGGTATGTAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAATAGAGTTACTCATGATGGCCAGTGGGGAACAGGTATGTAGA  188

seq1  AACATAGGAGCTGGTGGTAAAGAAATGGAAACAAAGTTATCAGAAACACA  247
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACATAGGAGCTGGTGGTAAAGAAATGGAAACAAAGTTATCAG-AACACA  237

seq1  AAAGCCATTTAAAAATAATCTTAGCTTTGTTCAATGACCAGAATGATTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTTAAAAATAATCTTAGCTTTGTTCAATGACCAGAATGATTGT  287

seq1  AAATTTTATGCAGCCCATGAAGTGAGATTTGAAAACTCTCGAGGAAGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATGCAGCCCATGAAGTGAGATTTGAAAACTCTCGAGGAAGAAT  337

seq1  TGGGAAAGGTGACCAAATTACGATTAGATAGACCATTCAAACTGACAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGTGACCAAATTACGATTAGATAGACCATTCAAACTGACAGTG  387

seq1  AGAGCATCCTAGTACGACCTTTGTCTGCACAGTGTTTAACCTGCCTTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCTAGTACGACCTTTGTCTGCACAGTGTTTAACCTGCCTTACA  437

seq1  CTGGTCTCTGCAGTTTCCACCCCTAGACCCATGATAACACGCAAAGTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCTGCAGTTTCCACCCCTAGACCCATGATAACACGCAAAGTTTA  487

seq1  GAGAATTTGGGTTGTTTGCTTTCTCATGTGGGAAAATAGCCACTAGCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTGGGTTGTTTGCTTTCTCATGTGGGAAAATAGCCACTAGCAAA  537

seq1  TGATAGTTCATTATGACATGAACATAGCATAACAATCATAATGGGATTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTCATTATGACATGAACATAGCATAACAATCATAATGGGATTAT  587

seq1  TCACTAAATTTGAGAAAATGGGCTCTCACCTGCAGATGACTGTCAAAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATTTGAGAAAATGGGCTCTCACCTGCAGATGACTGTCAAAAGT  637

seq1  TAAAATGGACAAGAACAGAGAGCATCTTCTGAATACGCAGCATGTGCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGACAAGAACAGAGAGCATCTTCTGAATACGCAGCATGTGCAGT  687

seq1  GATACTTCTGTATGCTTCACCTAGTTGTCTACCTTCCTTCTCATAAGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCTGTATGCTTCACCTAGTTGTCTACCTTCCTTCTCATAAGAAC  737

seq1  GCAGTAAGCCAAGCATTGTGTCACTGGTTTGCATTAAGGAATGCGCAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGCCAAGCATTGTGTCACTGGTTTGCATTAAGGAATGCGCAATG  787

seq1  TAAAATGTCAGAAGAGAAATATGCTACTGTTGGCTGCAAAACTAATGAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCAGAAGAGAAATATGCTACTGTTGGCTGCAAAACTAATGAGT  837

seq1  GCAGAAGGCCCATTAATTTCCTTCCAAGGCTTGTGGTTTTGTTGTGTATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGCCCATTAATTTCCTTCCAAGGCTTGTGGTTTTGTTGTGTATA  887

seq1  TGCTTTTTTGTTCAACCTTGTGTCTTGTTGGCCTGAAGCAGAAAAAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTGTTCAACCTTGTGTCTTGTTGGCCTGAAGCAGAAAAAAACA  937

seq1  GAGATAAAGTTTCTGGCATCCGCAGAAACAAGAATGCAGTTTTGAAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGTTTCTGGCATCCGCAGAAACAAGAATGCAGTTTTGAAATTA  987

seq1  GAAAATAGAGTCTTAATTTATTCTATTGTAAAGTTTCTGGAGTTCAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAGTCTTAATTTATTCTATTGTAAAGTTTCTGGAGTTCAAGAA  1037

seq1  AGTGGCCTTTGGTCATTTATTTCTATTATTTTCTCTGGAATGGCAGATAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTTTGGTCATTTATTTCTATTATTTTCTCTGGAATGGCAGATAG  1087

seq1  AATTC  1102
      |||||
seq2  AATTC  1092

seq1: chr6_25217794_25218672
seq2: B6Ng01-023A12.g_69_947

seq1  GAATTCAAAAAAATGGAGTGTCATTAGCTTGTGTTAACAATTTTTAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAAATGGAGTGTCATTAGCTTGTGTTAACAATTTTTAATAG  50

seq1  AGATACATACTCAGACATTCAGAAAACCTTTCCCCAGAGCCCTGGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATACTCAGACATTCAGAAAACCTTTCCCCAGAGCCCTGGCTTGT  100

seq1  TAATAAGATTTGTACAGTGACATTGAATAGCTTTGATTAAGCCATTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGATTTGTACAGTGACATTGAATAGCTTTGATTAAGCCATTATAG  150

seq1  TTTTATCTATAATAATAAATTGACTCATAAAATGTCATTTTATATAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTATAATAATAAATTGACTCATAAAATGTCATTTTATATAAAGG  200

seq1  AGGCTCAGCATATATACATATATACATATATATATATATATATATACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGCATATATACATATATACATATATATATATATATATATACATA  250

seq1  TATATATATATAATTACTTTGATTTTTCTCACATTAAAGGAGCTCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATAATTACTTTGATTTTTCTCACATTAAAGGAGCTCAAAAT  300

seq1  GTCACCTTTTTACTGTGTAAAATTTTGTGGTTAAACAGGGTATCACTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTTTTACTGTGTAAAATTTTGTGGTTAAACAGGGTATCACTGAC  350

seq1  TTATCCATTTTCTGTTGGTGGATGCTTCAGTCACCTTCACTTTAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTTTCTGTTGGTGGATGCTTCAGTCACCTTCACTTTAAAAAAA  400

seq1  TTTAGAAATGTCCCCGAAAACAGTATTTAATACAAGCTTCATAATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATGTCCCCGAAAACAGTATTTAATACAAGCTTCATAATTTTTT  450

seq1  GTGCAGATGCGTTTTAGTTATGAAGTAGCAGGGAAAATATTTTATGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATGCGTTTTAGTTATGAAGTAGCAGGGAAAATATTTTATGACTG  500

seq1  AGGGTCACCACAACATGAGGAACTGTATTAAAGAGGGTCAAAGCATTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACCACAACATGAGGAACTGTATTAAAGAGGGTCAAAGCATTAGG  550

seq1  ACAGTTAAGAAATACTGTTACAGACTGACTTTCTAACAATTTCTGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAGAAATACTGTTACAGACTGACTTTCTAACAATTTCTGGCATT  600

seq1  GTCTCATGGGAAACTGTGATGCTAACATATAGCTGTAATGTTGATAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGGAAACTGTGATGCTAACATATAGCTGTAATGTTGATAACAT  650

seq1  GGAAAAGATGAGTAAGGGAAACCCAGTGTTTGGAAACACTAATTCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGATGAGTAAGGGAAACCCAGTGTTTGGAAACACTAATTCAGATT  700

seq1  GGACACATAAATATCCAGTGACCTGGTTCCAATCTAGCACCATCTTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATAAATATCCAGTGACCTGGTTCCAATCTAGCACCATCTTCTTA  750

seq1  TTTCCTGGCTTGCTGGGGACACCAACATTAATTGTGCCTATTCTTATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCTTGCTGGGGACACCAACATTAATTGTGCCTATTCTTATGTC  800

seq1  TTGTGCTTATGTGTGCATGCATGTGTCTACATGCCTGCATTTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTATGTGTGCATGCATGTGTCTACATGCCTGCATTTGTGTGTGT  850

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  879
      |||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  879