BAC Information

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BAC

Clone NameB6Ng01-023K07
Chromosome6 (Build37)
Map Location 52,497,613 - 52,630,692
singlet/doubletdoublet
Overlap geneHibadh
Upstream geneSnx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841
Downstream geneTax1bp1, Jazf1, LOC666259, LOC666516, D430007I03, Creb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023K07.bB6Ng01-023K07.g
ACCDH855506DH855507
length6871,053
definitionDH855506|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K07, 5' end.DH855507|Mus musculus domesticus DNA, BAC clone: B6Ng01-023K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,630,007 - 52,630,692)(52,497,613 - 52,498,670)
sequence
gaattccgagaagagttcattctaggcagagaatgactaatcgccttttg
tattcatctgagaggatcagtgggtggttcgtggataggagatgggttat
attgcccttaaaataaaatagtgagggaggcaggtacagctaaattggaa
atttggctttgtgtggtgctggacatttctattaacccttctgagcccca
ctgaagaatgaatggcatgatgattggtcgattaaacaagatcatcagga
agaagtgccctgtgtttgcccttatatctgttctctctctctctctttcc
tttccccactccctcttccttcttctctctctctctccttccctccctcc
acttcttccccctcccttcccctccctcccttcaccttttcccctccctc
tccctcactttctctctcctactccctcctatccctcctctcctctctct
tctcccctccctccatctcttcttttcccctcctctccttccttgttcct
ccccctctcgttccttctccagctctctgtcaacttctctcctttcctaa
tttacttttttgaggaagaatctcatgttgccttgagcttctaatctttc
cggtctccaccaaccgaaaggtgagactagggatgctgcaacttctcttt
ttatttaattttcttcctctagcttctgaccaggaat
gaattcagcatggctgaagcagagaggagcagaagaggccaaattatcaa
ggccttgttagacaagctgcagagatagacattaacctacaagtaaccgt
gagctattatgagaaggtaccaggagaagtgactcttgagtttacattgt
agcctactctcattagcatgtgggaagcaacccagagccatcaggatcag
ctggggaagtcttgtggtgtatggaaatgaggtgccaccatggaattgct
ggagaaagaggaggcatctgaatgaatccaagacacacttgggaagtaga
ggggacaaatgtcatcgggaattcagcatctgggcaactgtgttactaca
tttgttctggggcaaagggtggggagttctagaagacctaaagatctgtt
ggcctaagtatgttctagaggagagatgacaaacgaaatgagatgccatc
cagaaaaatcaacacaccaaaacaacaacaacaacaacaacaacaacaac
caccaccaaatagctgggtgtggtggcgtacacctttaatcccagcactt
gagaggcagaggcaggtggatttctgagttcgaggccaccctggtctaca
aagtgagttccaggacagctagggctatacagagaaaccctgtctcaaaa
aaccaaaaaaaaaaacaaaacaaaaacaaaacaaacaaaaaaccaaaatc
aaaccaaaccaaaacagaaacaaataaatgcctttaaacgactaatttat
acatgaaatcccttcgcacacttaacacaagagcattaacaacttggaaa
tcacactgctcccaatctaaggagtttttaagttaatgtaaatttatgat
gaagaacaaattttattagcttatactataaataaacctcaagcctcaga
gaaaaatctcagtgcatccttagccagaaataaaatgaccaaggtaaaga
tttttttaatcaaagccaaattacactattttagtgggaaactgatgcac
ctgtgtaaacattttggcttcttggatagaagcaaggttgtttgaaagtt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52630007_52630692
seq2: B6Ng01-023K07.b_33_719 (reverse)

seq1  ATTCCTGGTCAGAAGCTAGAGGATGAAAATTAAATAAAAAGAGAAGTTGC  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTCCTGGTCAGAAGCTAGAGGAAGAAAATTAAATAAAAAGAGAAGTTGC  50

seq1  AAGCATCCCTAGTCTCGCCTTTCGGTTGGTGGAGACCGG-AAGATTAGGA  99
       ||||||||||||||| |||||||||||||||||||||| |||||||| |
seq2  -AGCATCCCTAGTCTCACCTTTCGGTTGGTGGAGACCGGAAAGATTAGAA  99

seq1  GCTCAAGGCAACATGAGATTCTTCCTC-AAAAAGTAAATTAGGAAAGGAG  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTCAAGGCAACATGAGATTCTTCCTCAAAAAAGTAAATTAGGAAAGGAG  149

seq1  AGAAGTTGACAGAGAGCTGGAGAAGGAACGAGAGGGGGAGGAACAAGGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGACAGAGAGCTGGAGAAGGAACGAGAGGGGGAGGAACAAGGAA  199

seq1  GGAGAGGAGGGGAAAAGAAGAGATGGAGGGAGGGGAGAAGAGAGAGGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGGGGAAAAGAAGAGATGGAGGGAGGGGAGAAGAGAGAGGAGA  249

seq1  GGAGGGATAGGAGGGAGTAGGAGAGAGAAAGTGAGGGAGAGGGAGGGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATAGGAGGGAGTAGGAGAGAGAAAGTGAGGGAGAGGGAGGGGAA  299

seq1  AAGGTGAAGGGAGGGAGGGGAAGGGAGGGGGAAGAAGTGGAGGGAGGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGGGAGGGAGGGGAAGGGAGGGGGAAGAAGTGGAGGGAGGGAA  349

seq1  GGAGAGAGAGAGAGAAGAAGGAAGAGGGAGTGGGGAAAGGAAAGAGAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGAGAAGAAGGAAGAGGGAGTGGGGAAAGGAAAGAGAGAG  399

seq1  AGAGAGAACAGATATAAGGGCAAACACAGGGCACTTCTTCCTGATGATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACAGATATAAGGGCAAACACAGGGCACTTCTTCCTGATGATCT  449

seq1  TGTTTAATCGACCAATCATCATGCCATTCATTCTTCAGTGGGGCTCAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATCGACCAATCATCATGCCATTCATTCTTCAGTGGGGCTCAGAA  499

seq1  GGGTTAATAGAAATGTCCAGCACCACACAAAGCCAAATTTCCAATTTAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAATAGAAATGTCCAGCACCACACAAAGCCAAATTTCCAATTTAGC  549

seq1  TGTACCTGCCTCCCTCACTATTTTATTTTAAGGGCAATATAACCCATCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGCCTCCCTCACTATTTTATTTTAAGGGCAATATAACCCATCTC  599

seq1  CTATCCACGAACCACCCACTGATCCTCTCAGATGAATACAAAAGGCGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACGAACCACCCACTGATCCTCTCAGATGAATACAAAAGGCGATT  649

seq1  AGTCATTCTCTGCCTAGAATGAACTCTTCTCGGAATTC  686
      ||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCTCTGCCTAGAATGAACTCTTCTCGGAATTC  687

seq1: chr6_52497613_52498670
seq2: B6Ng01-023K07.g_69_1121

seq1  GAATTCAGCATGGCTGAAGCAGAGAGGAGCAGAAGAGGCCAAATTATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATGGCTGAAGCAGAGAGGAGCAGAAGAGGCCAAATTATCAA  50

seq1  GGCCTTGTTAGACAAGCTGCAGAGATAGACATTAACCTACAAGTAACCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTTAGACAAGCTGCAGAGATAGACATTAACCTACAAGTAACCGT  100

seq1  GAGCTATTATGAGAAGGTACCAGGAGAAGTGACTCTTGAGTTTACATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATTATGAGAAGGTACCAGGAGAAGTGACTCTTGAGTTTACATTGT  150

seq1  AGCCTACTCTCATTAGCATGTGGGAAGCAACCCAGAGCCATCAGGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTCTCATTAGCATGTGGGAAGCAACCCAGAGCCATCAGGATCAG  200

seq1  CTGGGGAAGTCTTGTGGTGTATGGAAATGAGGTGCCACCATGGAATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGTCTTGTGGTGTATGGAAATGAGGTGCCACCATGGAATTGCT  250

seq1  GGAGAAAGAGGAGGCATCTGAATGAATCCAAGACACACTTGGGAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAGGAGGCATCTGAATGAATCCAAGACACACTTGGGAAGTAGA  300

seq1  GGGGACAAATGTCATCGGGAATTCAGCATCTGGGCAACTGTGTTACTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAATGTCATCGGGAATTCAGCATCTGGGCAACTGTGTTACTACA  350

seq1  TTTGTTCTGGGGCAAAGGGTGGGGAGTTCTAGAAGACCTAAAGATCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGGGGCAAAGGGTGGGGAGTTCTAGAAGACCTAAAGATCTGTT  400

seq1  GGCCTAAGTATGTTCTAGAGGAGAGATGACAAACGAAATGAGATGCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGTATGTTCTAGAGGAGAGATGACAAACGAAATGAGATGCCATC  450

seq1  CAGAAAAATCAACACACCAAAACAACAACAACAACAACAACAACAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATCAACACACCAAAACAACAACAACAACAACAACAACAACAAC  500

seq1  CACCACCAAATAGCTGGGTGTGGTGGCGTACACCTTTAATCCCAGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCAAATAGCTGGGTGTGGTGGCGTACACCTTTAATCCCAGCACTT  550

seq1  GAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCACCCTGGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCACCCTGGTCTACA  600

seq1  AAGTGAGTTCCAGGACAGCTAGGGCTATACAGAGAAACCCTGTCTCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACAGCTAGGGCTATACAGAGAAACCCTGTCTCAAAA  650

seq1  AACCAAAAAAAAAAACAAAACAAAAACAAAACAAACAAAAAACCAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAAAAAACAAAACAAAAACAAAACAAACAAAAAACCAAAATC  700

seq1  AAACCAAACCAAAACAGAAACAAATAAATGCCTTTAAACGACTAATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCAAAACAGAAACAAATAAATGCCTTTAAACGACTAATTTAT  750

seq1  ACATGAAATCCCTTCGCACACTTAACACAAGAGCATTAACAACTTGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATCCCTTCGCACACTTAACACAAGAGCATTAACAACTTGGAAA  800

seq1  TCACACTGCTCCCAATCTAAGGAGTTTTTAAGTTAATGTAAATTTATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGCTCCCAATCTAAGGAGTTTTTAAGTTAATGTAAATTTATGAT  850

seq1  GAAGAACAAAATTTTATTAGCTTATACTATAAATAAACC-CAAGCCTCAG  899
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAGAAC-AAATTTTATTAGCTTATACTATAAATAAACCTCAAGCCTCAG  899

seq1  AGAAAAATCTCAGTGCATCCTTAGCCAGAAATAAAATGACCAAGGTAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCTCAGTGCATCCTTAGCCAGAAATAAAATGACCAAGGTAAAG  949

seq1  ATTTTTTTTAATCAAAGCCAAATTTACACTAATTTTTAGTGGAAAACTGA  999
      | |||||||||||||||||||| ||||||||  ||||||||| |||||||
seq2  A-TTTTTTTAATCAAAGCCAAA-TTACACTA--TTTTAGTGGGAAACTGA  995

seq1  TGCACTGTTGTAAACATTTTGCCTTCTTGGATAGAAGCAAGGTTTGTTGA  1049
      |||||   ||||||||||||| ||||||||||||||||||||||  ||||
seq2  TGCACCTGTGTAAACATTTTGGCTTCTTGGATAGAAGCAAGGTTGTTTGA  1045

seq1  AAGTGTGTG  1058
      |||| ||||
seq2  AAGT-TGTG  1053