BAC Information

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BAC

Clone NameB6Ng01-024H08
Chromosome8 (Build37)6 (Build37)
Map Location 51,862,124 - 51,862,17552,151,694 - 52,152,756
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024H08.bB6Ng01-024H08.g
ACCDH856087DH856088
length2141,039
definitionDH856087|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H08, 5' end.DH856088|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,862,124 - 51,862,175)(52,151,694 - 52,152,756)
sequence
gaattcactagctaggaatactagctgcaaaccaccagccaaagaaaaca
cctggtgggactcatggctctagctgcatatgtagcaggggatggcctag
tctgtcatcaatgggaggagaggcccttggtcctatgaaggttctatacc
ccagtgtaggggaatgccaggtccaggaagcaggagtgggtgggttggtg
agcagcggggaggg
gaattccacttcaaccgctacctgacccgccgaagaaggatcgaaatagc
tcatgccctttgcctctccgagagacaaattaaaatctggttccaaaaca
ggaggatgaagtggaaaaaagataataagctgaaaagcatgagtatggcc
gcggcagggggggctttccgcccctgagcatctgagcggccaaagtactg
agcagtagtagccgggcagctctctgtagtgtcagtactaaggtgacttt
ctgaaactccccttgtgttccttctgtgaagaagccctgttctcgttgcc
ctaattcatcttttaatcatgagcctgtttattgccattatagcgcctgt
ataagtagatctgcttctgttcatctctttgtcctgaatggctttgtctt
gaaaaaaaaatagatgttttaacttatttatatgaagcaagctgtgttac
ttgaagtaactaaaacaaaaaaaaaaaaaaaagaaaagagaaaaaaaaac
tacacacacaaaaagcccccccacctcgtttagtgccaatgttgtgtgtt
gcacttgagttctttaatgtgcatgtacgtggaagtgttcctgtctcaat
agctccaagctgttaaagatatttttattcaaactacctatattccttgt
gtaattaatgctgttgtagaggtgacttgataagacacaaattaacttgt
tcaacgtgtagtggctagtggctctgtgacgaaaactgtgactccaagcg
gtgtgtccctgcgtgcctttgtaggacccttttcacgaactctggaagtg
gctcttataagcgcagcttcagtgatgtatgtttttgtgaaaaagttaca
aatattgtccaatctggctgttaagcaactgtgatcagcttttttttttt
ttgatttgttttaaggaaaaaaacactgactggaaacaaaacaaataact
ttcattgtagtccctgggtgattatgccaaaagcaagtgctcttctgctt
tctgtcgtccaatagactgaagctgctatctgcggctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51862124_51862175
seq2: B6Ng01-024H08.b_208_254 (reverse)

seq1  CCCTCCCAGCTTCCCCTGCTCACCAACCCACCCACTCCTGCTTCCTGG-C  49
      ||||||      || ||||||||||||||||||||||||||||||||| |
seq2  CCCTCC------CCGCTGCTCACCAACCCACCCACTCCTGCTTCCTGGAC  44

seq1  CTG  52
      |||
seq2  CTG  47

seq1: chr6_52151694_52152756
seq2: B6Ng01-024H08.g_68_1106 (reverse)

seq1  GTAGCCGCAGACTCAGCAGCCTACAGTACTATTGGACAGACAGAAAAGCA  50
      |||||||||||   ||||| || |||| ||||||||| ||||| ||||||
seq2  GTAGCCGCAGA--TAGCAG-CTTCAGT-CTATTGGAC-GACAG-AAAGCA  44

seq1  GAAAGAGCAGCTTGCTATTTGGCATAAATCAGACCAAGAGAACTTACAAT  100
      | ||||||| |||||| |||||||| ||||  ||| || ||   ||||||
seq2  G-AAGAGCA-CTTGCT-TTTGGCAT-AATC--ACCCAGGGA--CTACAAT  86

seq1  AGAAAGTTTATTTTGTTTTGTTTCCAGTCAGTGTTTTTTTTCCTTAAAAA  150
       |||||||   |||||||||||||||||||||| ||||||||||| ||||
seq2  -GAAAGTT--ATTTGTTTTGTTTCCAGTCAGTG-TTTTTTTCCTT-AAAA  131

seq1  CAAATACAAAAAAAAAAAAAAGCTGATCACAGTTTGCTTAAACAGCCAGA  200
      |||||   |||||||||||||||||||||||| |||||| ||||||||||
seq2  CAAAT--CAAAAAAAAAAAAAGCTGATCACAG-TTGCTT-AACAGCCAGA  177

seq1  CTTGGACAATATTTGTAACTTTTTCACAAAAACATACATCACTGAAGCTG  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGGACAATATTTGTAACTTTTTCACAAAAACATACATCACTGAAGCTG  226

seq1  CGCTTATAAGAGCCACTTCCAGAGTTCGTGCAAAGGGTCCTACAAAGGCA  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGCTTATAAGAGCCACTTCCAGAGTTCGTGAAAAGGGTCCTACAAAGGCA  276

seq1  CGCAGGGACACACCGCTTGGAGTCACAGTTTTCGTCACAGAGCCACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGACACACCGCTTGGAGTCACAGTTTTCGTCACAGAGCCACTAGC  326

seq1  CACTACACGTTGAACAAGTTAATTTGTGTCTTATCAAGTCACCTCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACACGTTGAACAAGTTAATTTGTGTCTTATCAAGTCACCTCTACAA  376

seq1  CAGCATTAATTACACAAGGAATATAGGTAGTTTGAATAAAAATATCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAATTACACAAGGAATATAGGTAGTTTGAATAAAAATATCTTTA  426

seq1  ACAGCTTGGAGCTATTGAGACAGGAACACTTCCACGTACATGCACATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGAGCTATTGAGACAGGAACACTTCCACGTACATGCACATTAA  476

seq1  AGAACTCAAGTGCAACACACAACATTGGCACTAAACGAGGTGGGGGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGTGCAACACACAACATTGGCACTAAACGAGGTGGGGGGGCT  526

seq1  TTTTGTGTGTGTAGTTTTTTTTTCTCTTTTCTTTTTTTTTTTTTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTGTAGTTTTTTTTTCTCTTTTCTTTTTTTTTTTTTTTTGTT  576

seq1  TTAGTTACTTCAAGTAACACAGCTTGCTTCATATAAATAAGTTAAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTTCAAGTAACACAGCTTGCTTCATATAAATAAGTTAAAACAT  626

seq1  CTATTTTTTTTTCAAGACAAAGCCATTCAGGACAAAGAGATGAACAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTTTTCAAGACAAAGCCATTCAGGACAAAGAGATGAACAGAAG  676

seq1  CAGATCTACTTATACAGGCGCTATAATGGCAATAAACAGGCTCATGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTACTTATACAGGCGCTATAATGGCAATAAACAGGCTCATGATTA  726

seq1  AAAGATGAATTAGGGCAACGAGAACAGGGCTTCTTCACAGAAGGAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAATTAGGGCAACGAGAACAGGGCTTCTTCACAGAAGGAACACA  776

seq1  AGGGGAGTTTCAGAAAGTCACCTTAGTACTGACACTACAGAGAGCTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTTCAGAAAGTCACCTTAGTACTGACACTACAGAGAGCTGCCC  826

seq1  GGCTACTACTGCTCAGTACTTTGGCCGCTCAGATGCTCAGGGGCGGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTACTGCTCAGTACTTTGGCCGCTCAGATGCTCAGGGGCGGAAAG  876

seq1  CCCCCCCTGCCGCGGCCATACTCATGCTTTTCAGCTTATTATCTTTTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCTGCCGCGGCCATACTCATGCTTTTCAGCTTATTATCTTTTTTC  926

seq1  CACTTCATCCTCCTGTTTTGGAACCAGATTTTAATTTGTCTCTCGGAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATCCTCCTGTTTTGGAACCAGATTTTAATTTGTCTCTCGGAGAG  976

seq1  GCAAAGGGCATGAGCTATTTCGATCCTTCTTCGGCGGGTCAGGTAGCGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGCATGAGCTATTTCGATCCTTCTTCGGCGGGTCAGGTAGCGGT  1026

seq1  TGAAGTGGAATTC  1063
      |||||||||||||
seq2  TGAAGTGGAATTC  1039