BAC Information

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BAC

Clone NameB6Ng01-024K12
Chromosome6 (Build37)
Map Location 12,282,347 - 12,364,232
singlet/doubletdoublet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K12.bB6Ng01-024K12.g
ACCDH856226DH856227
length8431,112
definitionDH856226|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K12, 5' end.DH856227|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,282,347 - 12,282,911)(12,363,103 - 12,364,232)
sequence
gaattcaagagcatactgactctctacagttatgcattatgttaatactt
ttcataaatagtgaaaaaaacttgctttgttaaagctgcaccaagatgat
ttatataatgtgtggctattttgaaaggagtttttcaccctaatttcttt
ctcagactgtttatcatttgtatacagacgggctactaatttctgtgatt
taattttgtagccagccactttgctgaaggtgttgatcaggtgtaggagt
ttcctggtaaaatttttgctgtcacttatgtctagtatcttatcatcttc
gaatagcaagaagactttgacttcttcctttccaatttgccttgatgtcc
ttgcgttgtcttattgctctgtctagaacttcaagtactatattgaagag
atagaatgatagtatgtgctttgaatccccgatctttccaatacttataa
catgaaggggtgttgggttttttgtcaaaggcttttctagcatttatcga
gtggctcatgtggttgttttctttcatttttgttatatggtagattatat
tgatggatttttctatggtgaacctctcctgcattcatgggatgaagcct
acttgatcatggtgggattactttttgatttgttctttgttcagtttgca
agtatttttttaaaggatttatttttattagtttttaaaaagattattta
ttattatatataagtacactgtagctgtcttcagatgtaccagaagaggg
cgtcagatctcattacggatggttgtgagccaccatgtgttgctgggatt
ttaacttcatttttttcgatgagtagttggtgctcctaaccac
gaattctttaacttaaaccaggtaaaggaagagtttgctgaagagagctc
tgtggggaagtgtgtgccctgcaaagatgagggccatccccaaaactctt
gaaaaggaatctaggtgttgtggagttagccagtatcccagagataagga
ggcagagtcagatggatgtccgtggcctactcgatggccatcatcaccta
agcattgagctttagtctcagtgaaagcttgtcacaaacacgaggtagac
tgctctggaggaagacagacagacaaacagacagacagacagagagacac
atgagaagggacttgagaccatccaggggtcagatttttacaccttattt
tctacgtacataaaatttcaacaaacttcatttgtgaaactaacagtgat
gtgcatgtatcctcactagtgaaaagtgagaaaatatttgtttgcaaagt
tcaaagtgacctgatataacttcctttgacaaatgtcagcgtgcctttat
atctgctatgtgcagagaatagatgcagactgaaacagaattaggccaat
tttctcaaataattagaagcctttggaaatcatactttacagtgaaaaac
atggaagaagtaatagttctattttctgaactgtaatattttcatgtttt
acagtttagtgattttgattattagagccacagagcagctgtgtttctta
gagaattcaaacaaaccacagatccaggatgtgtgtggatgtgaacatca
cttgatgtctaagtagacggtatcacgtcctcatcgccttgcttctgagg
atgtgagaaagctgcacagtaaggactctccttcccctttctgccaatga
gctttaggattcagttcccttcagtgtgtcctggacctgctcatcttgat
gccagcagtggtcagtcagagagggcctatgctgcaacagaagtgacagc
atagcacagcgtcacttgttcctaatgcataccccatcccctcctatatt
acacacatttactttctctatgattgctacctctgactgacagtcaacaa
ggtcatgctgggggaactctttgattatttgacttgctagataaaagaat
ccttctttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12282347_12282911
seq2: B6Ng01-024K12.b_35_599

seq1  GAATTCAAGAGCATACTGACTCTCTACAGTTATGCATTATGTTAATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCATACTGACTCTCTACAGTTATGCATTATGTTAATACTT  50

seq1  TTCATAAATAGTGAAAAAAACTTGCTTTGTTAAAGCTGCACCAAGATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATAGTGAAAAAAACTTGCTTTGTTAAAGCTGCACCAAGATGAT  100

seq1  TTATATAATGTGTGGCTATTTTGAAAGGAGTTTTTCACCCTAATTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATGTGTGGCTATTTTGAAAGGAGTTTTTCACCCTAATTTCTTT  150

seq1  CTCAGACTGTTTATCATTTGTATACAGACGGGCTACTAATTTCTGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTGTTTATCATTTGTATACAGACGGGCTACTAATTTCTGTGATT  200

seq1  TAATTTTGTAGCCAGCCACTTTGCTGAAGGTGTTGATCAGGTGTAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTAGCCAGCCACTTTGCTGAAGGTGTTGATCAGGTGTAGGAGT  250

seq1  TTCCTGGTAAAATTTTTGCTGTCACTTATGTCTAGTATCTTATCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTAAAATTTTTGCTGTCACTTATGTCTAGTATCTTATCATCTTC  300

seq1  GAATAGCAAGAAGACTTTGACTTCTTCCTTTCCAATTTGCCTTGATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAAGAAGACTTTGACTTCTTCCTTTCCAATTTGCCTTGATGTCC  350

seq1  TTGCGTTGTCTTATTGCTCTGTCTAGAACTTCAAGTACTATATTGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTGTCTTATTGCTCTGTCTAGAACTTCAAGTACTATATTGAAGAG  400

seq1  ATAGAATGATAGTATGTGCTTTGAATCCCCGATCTTTCCAATACTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGATAGTATGTGCTTTGAATCCCCGATCTTTCCAATACTTATAA  450

seq1  CATGAAGGGGTGTTGGGTTTTTTGTCAAAGGCTTTTCTAGCATTTATCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGGGTGTTGGGTTTTTTGTCAAAGGCTTTTCTAGCATTTATCGA  500

seq1  GTGGCTCATGTGGTTGTTTTCTTTCATTTTTGTTATATGGTAGATTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCATGTGGTTGTTTTCTTTCATTTTTGTTATATGGTAGATTATAT  550

seq1  TGATGGATTTTTCTA  565
      |||||||||||||||
seq2  TGATGGATTTTTCTA  565

seq1: chr6_12363103_12364232
seq2: B6Ng01-024K12.g_67_1178 (reverse)

seq1  TGAGAAAGAAGAGATCATTTTATCTAAGCAAAAGTCAAAATAAATACAAA  50
      ||||||||||| |||  |||||||| |||  ||||| |||||   |  ||
seq2  TGAGAAAGAAG-GATTCTTTTATCT-AGC--AAGTC-AAATA---ATCAA  42

seq1  AGAGTTCACCCAGGCATGACCTTGTTGACTGTCAGTCAGAGTGTAGCATT  100
      ||||||| |||| |||||||||||||||||||||||||||| |||||| |
seq2  AGAGTTCCCCCA-GCATGACCTTGTTGACTGTCAGTCAGAG-GTAGCAAT  90

seq1  CATATGAGAAAGTAAATGTGTGTAATATAAGGAAGGGGATGGGGTATGCA  150
      |||| ||||||||||||||||||||||||  | |||||||||||||||||
seq2  CATA-GAGAAAGTAAATGTGTGTAATATA--GGAGGGGATGGGGTATGCA  137

seq1  TTAGGAACAAGTGACGCCTGTGCTTCTGCTGTCACCTTCTGTTGCAGCAT  200
      |||||||||||||||| |||||| | |||||||| |||||||||||||||
seq2  TTAGGAACAAGTGACG-CTGTGC-TATGCTGTCA-CTTCTGTTGCAGCAT  184

seq1  AGGCCCTCTCTTGACTGACCACTGCTGGCATCAAGATGAGCAGGTCCAGG  250
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCTC-TGACTGACCACTGCTGGCATCAAGATGAGCAGGTCCAGG  233

seq1  ACACACCTGAAGGGAACTGAATCCTAAAGCTCATTGGCAGAAAGGGGAAG  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACA-CTGAAGGGAACTGAATCCTAAAGCTCATTGGCAGAAAGGGGAAG  282

seq1  GAGAGTCCTTACTGTGCAGCTTTCTCACATCCTCAGAAGCAAGGCGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCTTACTGTGCAGCTTTCTCACATCCTCAGAAGCAAGGCGATGA  332

seq1  GGACGTGATACCGTCTACTTAGACATCAAGTGATGTTCACATCCACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGATACCGTCTACTTAGACATCAAGTGATGTTCACATCCACACAC  382

seq1  ATCCTGGATCTGTGGTTTGTTTGAATTCTCTAAGAAACACAGCTGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGATCTGTGGTTTGTTTGAATTCTCTAAGAAACACAGCTGCTCTG  432

seq1  TGGCTCTAATAATCAAAATCACTAAACTGTAAAACATGAAAATATTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAATAATCAAAATCACTAAACTGTAAAACATGAAAATATTACAG  482

seq1  TTCAGAAAATAGAACTATTACTTCTTCCATGTTTTTCACTGTAAAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAATAGAACTATTACTTCTTCCATGTTTTTCACTGTAAAGTATG  532

seq1  ATTTCCAAAGGCTTCTAATTATTTGAGAAAATTGGCCTAATTCTGTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAGGCTTCTAATTATTTGAGAAAATTGGCCTAATTCTGTTTCA  582

seq1  GTCTGCATCTATTCTCTGCACATAGCAGATATAAAGGCACGCTGACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCTATTCTCTGCACATAGCAGATATAAAGGCACGCTGACATTT  632

seq1  GTCAAAGGAAGTTATATCAGGTCACTTTGAACTTTGCAAACAAATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGGAAGTTATATCAGGTCACTTTGAACTTTGCAAACAAATATTTT  682

seq1  CTCACTTTTCACTAGTGAGGATACATGCACATCACTGTTAGTTTCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTTCACTAGTGAGGATACATGCACATCACTGTTAGTTTCACAAA  732

seq1  TGAAGTTTGTTGAAATTTTATGTACGTAGAAAATAAGGTGTAAAAATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTGTTGAAATTTTATGTACGTAGAAAATAAGGTGTAAAAATCTG  782

seq1  ACCCCTGGATGGTCTCAAGTCCCTTCTCATGTGTCTCTCTGTCTGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGATGGTCTCAAGTCCCTTCTCATGTGTCTCTCTGTCTGTCTGT  832

seq1  CTGTTTGTCTGTCTGTCTTCCTCCAGAGCAGTCTACCTCGTGTTTGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTCTGTCTGTCTTCCTCCAGAGCAGTCTACCTCGTGTTTGTGAC  882

seq1  AAGCTTTCACTGAGACTAAAGCTCAATGCTTAGGTGATGATGGCCATCGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCACTGAGACTAAAGCTCAATGCTTAGGTGATGATGGCCATCGA  932

seq1  GTAGGCCACGGACATCCATCTGACTCTGCCTCCTTATCTCTGGGATACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCACGGACATCCATCTGACTCTGCCTCCTTATCTCTGGGATACTG  982

seq1  GCTAACTCCACAACACCTAGATTCCTTTTCAAGAGTTTTGGGGATGGCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCCACAACACCTAGATTCCTTTTCAAGAGTTTTGGGGATGGCCC  1032

seq1  TCATCTTTGCAGGGCACACACTTCCCCACAGAGCTCTCTTCAGCAAACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTGCAGGGCACACACTTCCCCACAGAGCTCTCTTCAGCAAACTC  1082

seq1  TTCCTTTACCTGGTTTAAGTTAAAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  TTCCTTTACCTGGTTTAAGTTAAAGAATTC  1112