BAC Information

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BAC

Clone NameB6Ng01-025F01
Chromosome13 (Build37)6 (Build37)
Map Location 90,824,684 - 90,824,718122,903,665 - 122,904,715
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F01.bB6Ng01-025F01.g
ACCDH856703DH856704
length1,0101,051
definitionDH856703|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F01, 5' end.DH856704|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,824,684 - 90,824,718)(122,903,665 - 122,904,715)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcacagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
ttggatggacctggagggcatcatcctgagtgaggttacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattaccccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaattaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatttagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaagtacccaaggagctaaaggatctgcacccttat
aggtggatca
gaattcaaggtctaccttgggaacataccaagactctgtctcagaaataa
tacaaaaattataaaggaaaaaattcacgatttaatgaaaaaaaaaaagc
cacaaatcagtatttatgatgtgccaattgcagaaaatatgaatttatgt
gtgaaagttttaaacgtgttggaaaatgaatatcaaatattggcgacaat
tatcctcaatgttaagaatgaattattctatattttggaatgtttctaaa
attaacatgattgtttcatatttacattctcttattatttcaaacatcac
attattagtgtttatcaggcacagcaacagaataggaaaaagaagaggaa
ataacagaactcaagaaatgaattttgtttgtctttcagctccccaaagg
aagaacacgtctcagaaaagttgtcacaaattctctaaggtcctctttac
ctcactcataatctatttcctgctgttgacaatcttattctccggtgctc
tgatcagtaagtacaagtacagaggaacaagtaagcaaggagagaagtag
ctattagacagacagctatccagaaacctgggaaagaaacctattctggg
gcgatagaaagtattggaaattttgatctgtctcagaattactgtcctgt
aaaaatgatggaatccattctgcctagagaaacatgtcctggagcatctg
ttagatctcagtaccgaggatgaatctgtgtctccttggcagcatttaga
agccagccccattggacacccagatgctcatcttttggaatgagaagggg
atgagaagtcatggaccaggctattctagggacagtgctccagtggaact
ccttctaaatatatatatatatttctgtcccagtctgtgtgagacctgca
agctatttttaaaatttatttatttatttattcaatttatttatattcta
aatgttgcccaacttccagagttcttctcttcctcccctgtcctttgcct
ctgagaagcgtactctgggggatgacaggaagggagttaggggtggaata
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90824684_90824718
seq2: B6Ng01-025F01.b_976_1010 (reverse)

seq1  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCA  35
      ||||||||||||||||||||| |||||||| ||||
seq2  TTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCA  35

seq1: chr6_122903665_122904715
seq2: B6Ng01-025F01.g_65_1115

seq1  GAATTCAAGGTCTACCTTGGGAACATACCAAGACTCTGTCTCAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTACCTTGGGAACATACCAAGACTCTGTCTCAGAAATAA  50

seq1  TACAAAAATTATAAAGGAAAAAATTCACGATTTAATGAAAAAAAAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATTATAAAGGAAAAAATTCACGATTTAATGAAAAAAAAAAAGC  100

seq1  CACAAATCAGTATTTATGATGTGCCAATTGCAGAAAATATGAATTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCAGTATTTATGATGTGCCAATTGCAGAAAATATGAATTTATGT  150

seq1  GTGAAAGTTTTAAACGTGTTGGAAAATGAATATCAAATATTGGCGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTTTAAACGTGTTGGAAAATGAATATCAAATATTGGCGACAAT  200

seq1  TATCCTCAATGTTAAGAATGAATTATTCTATATTTTGGAATGTTTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAATGTTAAGAATGAATTATTCTATATTTTGGAATGTTTCTAAA  250

seq1  ATTAACATGATTGTTTCATATTTACATTCTCTTATTATTTCAAACATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATGATTGTTTCATATTTACATTCTCTTATTATTTCAAACATCAC  300

seq1  ATTATTAGTGTTTATCAGGCACAGCAACAGAATAGGAAAAAGAAGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGTGTTTATCAGGCACAGCAACAGAATAGGAAAAAGAAGAGGAA  350

seq1  ATAACAGAACTCAAGAAATGAATTTTGTTTGTCTTTCAGCTCCCCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAACTCAAGAAATGAATTTTGTTTGTCTTTCAGCTCCCCAAAGG  400

seq1  AAGAACACGTCTCAGAAAAGTTGTCACAAATTCTCTAAGGTCCTCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACGTCTCAGAAAAGTTGTCACAAATTCTCTAAGGTCCTCTTTAC  450

seq1  CTCACTCATAATCTATTTCCTGCTGTTGACAATCTTATTCTCCGGTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATAATCTATTTCCTGCTGTTGACAATCTTATTCTCCGGTGCTC  500

seq1  TGATCAGTAAGTACAAGTACAGAGGAACAAGTAAGCAAGGAGAGAAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTAAGTACAAGTACAGAGGAACAAGTAAGCAAGGAGAGAAGTAG  550

seq1  CTATTAGACAGACAGCTATCCAGAAACCTGGGAAAGAAACCTATTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGACAGACAGCTATCCAGAAACCTGGGAAAGAAACCTATTCTGGG  600

seq1  GCGATAGAAAGTATTGGAAATTTTGATCTGTCTCAGAATTACTGTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATAGAAAGTATTGGAAATTTTGATCTGTCTCAGAATTACTGTCCTGT  650

seq1  AAAAATGATGGAATCCATTCTGCCTAGAGAAACATGTCCTGGAGCATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATGGAATCCATTCTGCCTAGAGAAACATGTCCTGGAGCATCTG  700

seq1  TTAGATCTCAGTACCGAGGATGAATCTGTGTCTCCTTGGCAGCATTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTCAGTACCGAGGATGAATCTGTGTCTCCTTGGCAGCATTTAGA  750

seq1  AGCCAGCCCCATTGGACACCCAGATGCTCATCTTTTGGAATGAGAAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCCCATTGGACACCCAGATGCTCATCTTTTGGAATGAGAAGGGG  800

seq1  ATGAGAAGTCATGGACCAGGCTATTCTAGGGACAGTGCTCCAGTGGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGTCATGGACCAGGCTATTCTAGGGACAGTGCTCCAGTGGAACT  850

seq1  CCTTCTAAATATATATATATATTTCTGTCCCAGTCTGTGTGAGACCTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAATATATATATATATTTCTGTCCCAGTCTGTGTGAGACCTGCA  900

seq1  AGCTATTTTTAAAAATTTATTTATTTATTTATTCAATTTATTTATATTCT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTT-AAAATTTATTTATTTATTTATTCAATTTATTTATATTCT  949

seq1  AAATGTTGCCCAACTTCCAGAGTTCTTCTCTTCCTCCCCTGTCCCTTTGC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAATGTTGCCCAACTTCCAGAGTTCTTCTCTTCCTCCCCTGT-CCTTTGC  998

seq1  CTCTGAG-AGCGTACTCTGGGGGATGACAGGGAGGGAGT--AGGGTGGAT  1047
      ||||||| ||||||||||||||||||||||| |||||||   ||||||| 
seq2  CTCTGAGAAGCGTACTCTGGGGGATGACAGGAAGGGAGTTAGGGGTGGA-  1047

seq1  ATAT  1051
      ||||
seq2  ATAT  1051