BAC Information

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BAC

Clone NameB6Ng01-025J02
Chromosome1 (Build37)6 (Build37)
Map Location 144,619,930 - 144,620,3299,477,380 - 9,478,136
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J02.bB6Ng01-025J02.g
ACCDH856876DH856877
length758992
definitionDH856876|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J02, 5' end.DH856877|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,619,930 - 144,620,329)(9,477,380 - 9,478,136)
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctcagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgccgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccgccccagaa
tctctgcgactctctctcccgtcccagaaacggctggcactctgtattcc
acatggtcacccatgcagcctgccctccgcggagtcttggagccaagaag
ttcccgctggcgcctgtgccacaaacctctcaggccgggcagacccccgt
gctctcac
gaattcacagatacataaacttgttgtagtctctgtgtgatcgatataag
cttttagaatctttctaagtgaaagttacagttgtaaattcctattgcag
tttatgaatacttcaaagctcttttctccacatatatggggatgtggctt
tgcctttcccagtcccatagaagagagaaggatgaacacaaagagaggga
aaaaataaaacattgcttagtcatggataacacaaaggaggcaatgcatt
tttcttttaaaattgaaaatagttttttttaacacaatattttatgatta
cagtttccgctcacccaccccctcccagggtctctccaccttgccaacta
ccgaatccatattatttcttgccctctctcattagaaaacaaacaggaat
tatataggggactaatatccaacatatataaagaactcaagaaggtggac
ttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaa
agaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactatcggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacaggtaaagaaggacacatgctccact
atgtttcatagcagccttatttataatagccagaagctggaaagaaccta
gatgcccctcaacagaggaatggatacagaaaatgtggtacatctacaca
atggagtactactcagctataaaaagaatgaatttatgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144619930_144620329
seq2: B6Ng01-025J02.b_283_799 (reverse)

seq1  GTGAGAGCACGGGGGTCTGCC-----------------------------  21
      |||||||||||||||||||||                             
seq2  GTGAGAGCACGGGGGTCTGCCCGGCCTGAGAGGTTTGTGGCACAGGCGCC  50

seq1  ---------------------GGACTCCGCGGAGGGCAGGCTGCACGGGA  50
                            ||||||||||||||||||||||| ||| 
seq2  AGCGGGAACTTCTTGGCTCCAAGACTCCGCGGAGGGCAGGCTGCATGGGT  100

seq1  GACTGTGTGGAATACAGAG-GCCAGCCGTTTCTGGGACGG--GCGAGAGT  97
      |||  |||||||||||||| ||||||||||||||||||||  | ||||||
seq2  GACCATGTGGAATACAGAGTGCCAGCCGTTTCTGGGACGGGAGAGAGAGT  150

seq1  CGCAGAGCTTCTGGGGCGGCGCCATCTTCATCTCCAGACAACCTGCCACC  147
      ||||||| |||||||||||||||||||||| |||||||||||| ||||||
seq2  CGCAGAGATTCTGGGGCGGCGCCATCTTCAGCTCCAGACAACCAGCCACC  200

seq1  TTCCTGG-------------------------------------------  154
      |||| ||                                           
seq2  TTCCCGGCAAGAGCCACAGAGCTTCTGAGGCGGCGCCATCCTCAGCTCCA  250

seq1  ---------------------CGAGAGCCACAGAGCTTCTGAGGTGGCGA  183
                           | ||||||||||||||||||||| |||||
seq2  GACGGCCGGCCTCCTTCCGGACAAGAGCCACAGAGCTTCTGAGGCGGCGA  300

seq1  CATCTTCGACTCCAGAAAACCGGCCACCTTCCTGGCCAAAGCAACACAGC  233
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CATCTTCGACTCCAGACAACTGGCCACCTTCCTGGCCAAAGCAACACAGC  350

seq1  TTCTGGGAAAGATCCTGTTTTGGGCCTTCACCTTCAGCCAGGAGGAGGTC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAAGATCCTGTTTTGGGCCTTCACCTTCAGCCAGGAGGAGGTC  400

seq1  CAAACACCAGATAACTGTACACCTTCCCCAAAAGAGGAGAGCTTGCCTGC  333
      ||||||||||||||||||||||||||||  |||||||||||||||||| |
seq2  CAAACACCAGATAACTGTACACCTTCCCTGAAAGAGGAGAGCTTGCCTAC  450

seq1  AGAGACTGCTCTAACCACTGAAACTCAGAGGAGAGAGCTTGTCTCCCACG  383
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  AGAGACTGCTCTGACCACTGAAACTCAGAGAAGAGAGCTTGTCTCCCACG  500

seq1  CCTGCTGATTGAGGGTA  400
      ||||||||| |||||||
seq2  CCTGCTGATAGAGGGTA  517

seq1: chr6_9477380_9478136
seq2: B6Ng01-025J02.g_68_824

seq1  GAATTCACAGATACATAAACTTGTTGTAGTCTCTGTGTGATCGATATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATACATAAACTTGTTGTAGTCTCTGTGTGATCGATATAAG  50

seq1  CTTTTAGAATCTTTCTAAGTGAAAGTTACAGTTGTAAATTCCTATTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAATCTTTCTAAGTGAAAGTTACAGTTGTAAATTCCTATTGCAG  100

seq1  TTTATGAATACTTCAAAGCTCTTTTCTCCACATATATGGGGATGTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATACTTCAAAGCTCTTTTCTCCACATATATGGGGATGTGGCTT  150

seq1  TGCCTTTCCCAGTCCCATAGAAGAGAGAAGGATGAACACAAAGAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCCAGTCCCATAGAAGAGAGAAGGATGAACACAAAGAGAGGGA  200

seq1  AAAAATAAAACATTGCTTAGTCATGGATAACACAAAGGAGGCAATGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAACATTGCTTAGTCATGGATAACACAAAGGAGGCAATGCATT  250

seq1  TTTCTTTTAAAATTGAAAATAGTTTTTTTTAACACAATATTTTATGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAAAATTGAAAATAGTTTTTTTTAACACAATATTTTATGATTA  300

seq1  CAGTTTCCGCTCACCCACCCCCTCCCAGGGTCTCTCCACCTTGCCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCGCTCACCCACCCCCTCCCAGGGTCTCTCCACCTTGCCAACTA  350

seq1  CCGAATCCATATTATTTCTTGCCCTCTCTCATTAGAAAACAAACAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATCCATATTATTTCTTGCCCTCTCTCATTAGAAAACAAACAGGAAT  400

seq1  TATATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC  450

seq1  TTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAA  500

seq1  AGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAAT  550

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  600

seq1  TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG  650

seq1  CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT  700

seq1  GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC  750

seq1  AGAAAAC  757
      |||||||
seq2  AGAAAAC  757