BAC Information

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BAC

Clone NameB6Ng01-025O08
Chromosome6 (Build37)
Map Location 147,166,613 - 147,312,904
singlet/doubletdoublet
Overlap genePthlh
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641
Downstream geneEG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025O08.bB6Ng01-025O08.g
ACCDH857098DH857099
length1,0421,119
definitionDH857098|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O08, 5' end.DH857099|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,166,613 - 147,167,660)(147,311,792 - 147,312,904)
sequence
gaattctctaattaatcttgcctcgcctctttctctttccttggttgtct
tttttcactttttctttggttcactgtctcagatgttagccaagacaagt
tgggtacccactgggaggccagaaagaactataggtatcatggattttct
cggaagttcagagcttagacatgtctgggcagagcgaagtggggtggtgg
tgaatggctaaagaaacataacagttcgccattattacacagaccctagc
taccatgtagggtgacatctgccgtcttcatagagcgaacagctgtttct
ttctgaagcactctcttacctggaagcactctgaccaggcatcaaatcct
tgtaggtgtagagtcttcgctcttttgcttatggaagtttttcctctctc
acactcccttgtttatttatccacttcttctggtgccacagccctttccc
caggctagccaaaagtgtggagccaaagagcctgcctttatcgatgctcc
aacatttttgtccccttgagtctgttgcttgcagcccgctagttgcacac
cagcgccagtgtgctacagcttctgttgcttcttccaaagcgactgcgtg
aataaaggtttccattttttccatcttcaaaaccctcgcatgtgtatacc
ttgctttttgagagtgggtctatcactgaacatagaacccaataattcag
ctaagctggcttgtcggaaagtgccagggacctgcctctttccacattga
caacgctggaattacaagcacttgccaccatattcacctttatagagatg
tttggaaactgaaacttgggactttatgcctgccagacacttaaatcacc
agttgagctgtcttccctgccctttctccttcccaaatctggctccttat
actacaatcattaaataggtatctccgagtgtttataagacaatatgggg
ctctgataatcttgcctgctagagatattttaagtgacataatactccta
cacaagacacagtttggggaggttgactatactgtcccattc
gaattccagccggaggctaggcatatctgtacctaacaatgcatttctgt
aatgctgggtgttaggcaaaggcttggttacttccagtttagcaattgca
tagctctctcactcaacttctgagtgggattaggcccctgcttaggccca
ccatgactttgtgatgctagattgctaaaaaaaaaaaaaataataaaaaa
aaagaaagaaagagagagagagagacagcttctcacacaccccaggcaca
agacaggtaactataaagagactgagagacagccgtaggcaccctgtttc
acacacccatcatggggcaggaaaacagatcttagagtttcgctattcac
aaagaaagagaagaacccggcttcccttgtgtctctgcacctagagtcct
ctgtctctgaggtaggagagacagggataattaccaaactcttccatctt
acttccctcatctatgtaaaggaagcttgactccaaatgtctatgcttat
agtcttaaattcttaattattattacttaagaatggggagcagtatctca
aggagaaagcacacaaagatggatttaaatggtggggagacagttgggga
agttcccaatctgcagacaagagcctccttagcctttgtaactggagagc
tgtcaggaaaccatgggctcccaaaaggagaggagaatgggtgtgtacag
aagtcacacaggcagcatgaatatttgcccccaaaacttcagagactcca
cacagctggatgtgtggtacggcaggcttctctgaagagtgtgtgtatct
ttttcaggacatgccataaatactaaatcctctgttgcacatgtatctag
aaaggtcaagaatattaggacagattcaaagcaaccccagcctaagctaa
tacaaggtcattaagaatcctctattttgagctgactccagctgagtggc
ccatcacctgttcttggtgagggacatcttaaaaccgggaccgtatcgaa
aatacaataaatgcctggctgtgcggacgaagttcagagtctttataacc
acagttttctctgtgaggaaacgaacttccctgtttattttttattgtgc
caattaagtgcagaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147166613_147167660
seq2: B6Ng01-025O08.b_48_1089

seq1  GAATTCTCTAATTAATCTTGCCTCGCCTCTTTCTCTTTCCTTGGTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATTAATCTTGCCTCGCCTCTTTCTCTTTCCTTGGTTGTCT  50

seq1  TTTTTCACTTTTTCTTTGGTTCACTGTCTCAGATGTTAGCCAAGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTTTTTCTTTGGTTCACTGTCTCAGATGTTAGCCAAGACAAGT  100

seq1  TGGGTACCCACTGGGAGGCCAGAAAGAACTATAGGTATCATGGATTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCCACTGGGAGGCCAGAAAGAACTATAGGTATCATGGATTTTCT  150

seq1  CGGAAGTTCAGAGCTTAGACATGTCTGGGCAGAGCGAAGTGGGGTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTTCAGAGCTTAGACATGTCTGGGCAGAGCGAAGTGGGGTGGTGG  200

seq1  TGAATGGCTAAAGAAACATAACAGTTCGCCATTATTACACAGACCCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCTAAAGAAACATAACAGTTCGCCATTATTACACAGACCCTAGC  250

seq1  TACCATGTAGGGTGACATCTGCCGTCTTCATAGAGCGAACAGCTGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTAGGGTGACATCTGCCGTCTTCATAGAGCGAACAGCTGTTTCT  300

seq1  TTCTGAAGCACTCTCTTACCTGGAAGCACTCTGACCAGGCATCAAATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGCACTCTCTTACCTGGAAGCACTCTGACCAGGCATCAAATCCT  350

seq1  TGTAGGTGTAGAGTCTTCGCTCTTTTGCTTATGGAAGTTTTTCCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGTAGAGTCTTCGCTCTTTTGCTTATGGAAGTTTTTCCTCTCTC  400

seq1  ACACTCCCTTGTTTATTTATCCACTTCTTCTGGTGCCACAGCCCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCTTGTTTATTTATCCACTTCTTCTGGTGCCACAGCCCTTTCCC  450

seq1  CAGGCTAGCCAAAAGTGTGGAGCCAAAGAGCCTGCCTTTATCGATGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGCCAAAAGTGTGGAGCCAAAGAGCCTGCCTTTATCGATGCTCC  500

seq1  AACATTTTTGTCCCCTTGAGTCTGTTGCTTGCAGCCCGCTAGTTGCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTGTCCCCTTGAGTCTGTTGCTTGCAGCCCGCTAGTTGCACAC  550

seq1  CAGCGCCAGTGTGCTACAGCTTCTGTTGCTTCTTCCAAAGCGACTGCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCAGTGTGCTACAGCTTCTGTTGCTTCTTCCAAAGCGACTGCGTG  600

seq1  AATAAAGGTTTCCATTTTTTCCATCTTCAAAACCCTCGCATGTGTATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGTTTCCATTTTTTCCATCTTCAAAACCCTCGCATGTGTATACC  650

seq1  TTGCTTTTTGAGAGTGGGTCTATCACTGAACATAGAACCCAATAATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGAGAGTGGGTCTATCACTGAACATAGAACCCAATAATTCAG  700

seq1  CTAAGCTGGCTTGTCGGAAAGTGCCAGGGACCTGCCTCTTTCCACATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGGCTTGTCGGAAAGTGCCAGGGACCTGCCTCTTTCCACATTGA  750

seq1  CAACGCTGGAATTACAAGCACTTGCCACCATATTCACCTTTATAGAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTGGAATTACAAGCACTTGCCACCATATTCACCTTTATAGAGATG  800

seq1  TTTGGAAACTG-AACTTGGGACTTTATGCCTGCAAGACACTTAAATCACC  849
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTTGGAAACTGAAACTTGGGACTTTATGCCTGCCAGACACTTAAATCACC  850

seq1  AGTTGAGCTGTCTTCCTGCCCCTTCCTCCTTCCCAAATCTGGCTCCTTAT  899
      ||||||||||||||||   ||||| |||||||||||||||||||||||||
seq2  AGTTGAGCTGTCTTCCCTGCCCTTTCTCCTTCCCAAATCTGGCTCCTTAT  900

seq1  ACTACAAACATTAAATAGGTATCTCCGAGTGTTTTATAGACAATATGGGG  949
      ||||||| ||||||||||||||||||||||||||   |||||||||||||
seq2  ACTACAATCATTAAATAGGTATCTCCGAGTGTTTATAAGACAATATGGGG  950

seq1  CTCTGATAATCTTGCCTGCTAGAGATATTTTAAGTGACAATTAATACTTC  999
      |||||||||||||||||||||||||||||||||||||||  |||||| ||
seq2  CTCTGATAATCTTGCCTGCTAGAGATATTTTAAGTGACA--TAATAC-TC  997

seq1  CTACCACAAAGACACAGTTTGGGGAGGTTGACTATACCTGTCCCCATTC  1048
      ||| ||| |||||||||||||||||||||||||||| |||| |||||||
seq2  CTA-CAC-AAGACACAGTTTGGGGAGGTTGACTATA-CTGT-CCCATTC  1042

seq1: chr6_147311792_147312904
seq2: B6Ng01-025O08.g_69_1187 (reverse)

seq1  AAAAATCTGCACTTAATTGGGCAC-ATAAAAAATAGACA-GGAAGTCTGT  48
      |||| ||||||||||||| ||||| |||||||||| ||| ||||||  ||
seq2  AAAATTCTGCACTTAATT-GGCACAATAAAAAATAAACAGGGAAGTTCGT  49

seq1  TTCCTCACAGAG-ATACTGTGGTT-TACAGACTCTG-ACTTCGTCCCGCA  95
      |||||||||||| | ||||||||| || |||||||| ||||||| |||||
seq2  TTCCTCACAGAGAAAACTGTGGTTATAAAGACTCTGAACTTCGT-CCGCA  98

seq1  CAGCCAGGCA-TTATTGTATTTTCGATACGGTCCCGGTTTTAAGATGTCC  144
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCATTTATTGTATTTTCGATACGGTCCCGGTTTTAAGATGTCC  148

seq1  CTCA-CAAGAACAGTTGATGGGCCACTCAGCTGGAGTCAGCTC-AAATAG  192
      |||| ||||||||| |||||||||||||||||||||||||||| ||||||
seq2  CTCACCAAGAACAGGTGATGGGCCACTCAGCTGGAGTCAGCTCAAAATAG  198

seq1  A-GATTCTTAATGACCTTGTATTAGCTTAGCCTGGGGTTGCTTTTGAATC  241
      | |||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AGGATTCTTAATGACCTTGTATTAGCTTAGGCTGGGGTTGC-TTTGAATC  247

seq1  TGTCCTAATATTCTTGACCTTTCTAGATACATGTGCAACAGAGGATTTAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAATATTCTTGACCTTTCTAGATACATGTGCAACAGAGGATTTAG  297

seq1  TATTTATGGCATGTCCTGAAAAAGATACACACACTCTTCAGAGAAGCCTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGGCATGTCCTGAAAAAGATACACACACTCTTCAGAGAAGCCTG  347

seq1  CCGTACCACACATCCAGCTGTGTGGAGTCTCTGAAGTTTTGGGGGCAAAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACCACACATCCAGCTGTGTGGAGTCTCTGAAGTTTTGGGGGCAAAT  397

seq1  ATTCATGCTGCCTGTGTGACTTCTGTACACACCCATTCTCCTCTCCTTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCTGCCTGTGTGACTTCTGTACACACCCATTCTCCTCTCCTTTT  447

seq1  GGGAGCCCATGGTTTCCTGACAGCTCTCCAGTTACAAAGGCTAAGGAGGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCATGGTTTCCTGACAGCTCTCCAGTTACAAAGGCTAAGGAGGC  497

seq1  TCTTGTCTGCAGATTGGGAACTTCCCCAACTGTCTCCCCACCATTTAAAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTGCAGATTGGGAACTTCCCCAACTGTCTCCCCACCATTTAAAT  547

seq1  CCATCTTTGTGTGCTTTCTCCTTGAGATACTGCTCCCCATTCTTAAGTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTGTGTGCTTTCTCCTTGAGATACTGCTCCCCATTCTTAAGTAA  597

seq1  TAATAATTAAGAATTTAAGACTATAAGCATAGACATTTGGAGTCAAGCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAAGAATTTAAGACTATAAGCATAGACATTTGGAGTCAAGCTT  647

seq1  CCTTTACATAGATGAGGGAAGTAAGATGGAAGAGTTTGGTAATTATCCCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACATAGATGAGGGAAGTAAGATGGAAGAGTTTGGTAATTATCCCT  697

seq1  GTCTCTCCTACCTCAGAGACAGAGGACTCTAGGTGCAGAGACACAAGGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTACCTCAGAGACAGAGGACTCTAGGTGCAGAGACACAAGGGA  747

seq1  AGCCGGGTTCTTCTCTTTCTTTGTGAATAGCGAAACTCTAAGATCTGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGTTCTTCTCTTTCTTTGTGAATAGCGAAACTCTAAGATCTGTTT  797

seq1  TCCTGCCCCATGATGGGTGTGTGAAACAGGGTGCCTACGGCTGTCTCTCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCATGATGGGTGTGTGAAACAGGGTGCCTACGGCTGTCTCTCA  847

seq1  GTCTCTTTATAGTTACCTGTCTTGTGCCTGGGGTGTGTGAGAAGCTGTCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTATAGTTACCTGTCTTGTGCCTGGGGTGTGTGAGAAGCTGTCT  897

seq1  CTCTCTCTCTCTTTCTTTCTTTTTTTTTATTATTTTTTTTTTTTTTAGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTTTCTTTCTTTTTTTTTATTATTTTTTTTTTTTTTAGCA  947

seq1  ATCTAGCATCACAAAGTCATGGTGGGCCTAAGCAGGGGCCTAATCCCACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCATCACAAAGTCATGGTGGGCCTAAGCAGGGGCCTAATCCCACT  997

seq1  CAGAAGTTGAGTGAGAGAGCTATGCAATTGCTAAACTGGAAGTAACCAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTGAGTGAGAGAGCTATGCAATTGCTAAACTGGAAGTAACCAAG  1047

seq1  CCTTTGCCTAACACCCAGCATTACAGAAATGCATTGTTAGGTACAGATAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTAACACCCAGCATTACAGAAATGCATTGTTAGGTACAGATAT  1097

seq1  GCCTAGCCTCCGGCTGGAATTC  1113
      ||||||||||||||||||||||
seq2  GCCTAGCCTCCGGCTGGAATTC  1119