BAC Information

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BAC

Clone NameB6Ng01-026I12
Chromosome6 (Build37)
Map Location 39,986,723 - 40,142,860
singlet/doubletdoublet
Overlap geneEG434008
Upstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026I12.bB6Ng01-026I12.g
ACCDH857548DH857549
length1,1271,030
definitionDH857548|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I12, 5' end.DH857549|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,141,705 - 40,142,860)(39,986,723 - 39,987,760)
sequence
gaattcagtctacaatgctggatctctcagatcattttcagtatacactg
gagtcctgaagaagtaggctgtaatgccagtgaaggaatggacttgctaa
tgaaagtaggagcaagcaggcagaagagagtaagctttccttcttccatg
tcctttatctaggctaccagtggccagattaaaatctggatcttcccatc
tcaaaagatctgcattaaaggtgtatcttctaacctcaagagttacagat
taaaagtgggtcttcccacttcaaatgatttaattaataataaaaaatta
taaataattaattaataataaaaaaaatccctcacaggtgtacctaacct
cttgggttttagtcaattccaaatgtagtcatgttgacaaccaggaacag
ccaccacagatggggaaggtgccagctctttcttcccttgaggttgctag
ttgtaagagtcccttgtcctgctgtcacactggtgtcttctggcaccatt
cagtcactgaagactaaggctacgcttctcttcttctcctcactcaaaca
tccagtgcctaacagataatctagttctccacagaacgatgggaacacaa
atgagtaggagtctacagtctctcttctggacagtcacttagtgaggaag
gtggtgttgacacttacctggcacctgtcttatgccaggctgcactgaca
ttgcacacacagtacacacagctcactctgagctaggcaagtggatgctg
tttcaatctgtttgaccgaacagtaatgcctaatggttttcttgtttcta
gtttcaaaggtttgccattttctgagttttcctttctattctctagctgg
aaacatttttcatgcttcacatgtagtcagccacttttgaattttgctgg
tgtcctgcagttgagtcttttgttaagtaaatattttatgtccttcacgt
ctgtgtacagaaacagcatctccatcccttgtcccgtgtaagccatctct
ccttaaccttcctattgcttggctcagtagcactatgagcccccgctgga
gagaacctcacttatgaggacaggctatgccgatacatgcaactcaacaa
atgaagactttggcaatcctttttttt
gaattctctcttaagtcacaaattctccactgtgtacacagagctgggat
cttgatatctctgtctgtctgtcctcatattggagcttctgacatcctgg
agcctgaagttacatggttagtggatgtcattggctccacaggaaagagc
agagaacaagcctagctggacagggcaggggtggctgacagtggaagggt
aggagaaagcccaagtcagagaggactcagctgaggctgacactcagctc
tgttctatgctgatcacagcagaagtatgagtctcatggtggcatcctag
ccaagggccagaacatctggaaagtgtgaggcgtcccctccctgttctaa
atggacagtcatcccccatccaacagttgttgataagattttttatcctg
tccctgaagatggatttcagaaactcagaattttatgaagaaattttatg
tggctgtattacatttgaaacttagcttccatctaattacatcatggtga
tttagaggcagcctctagtggaggttaactcaacacaactattcctgttt
tgaagggaataaactttagatgtatggaagcttctcacttcttttcctgt
tactatagcggagtacccccagctgggtaacttatgaagaaattaggttt
attttgtcctgtggtactagaaagtacaaaaccacaggcccagttccttc
tcagcttctgttgccccgtgcttcatcagtttcatcctagaaggagtggg
gaggcacgaagacacgtggggaaaggcaaaacctgagggaacagtcatcc
cttaccacaacctggcctagcatgaacccctctgtcttgtgagagcaagc
cctcactcacactccagaggtctcagcccacaaagtcttctgtgaggctc
ttccttccactgtacacatcaccttggggactagtttagcgtgtgtcttg
gtagagacaactgtagcaagaaccaatctgcggagaatccggttgttgtt
gccctttatttactccttcccaactccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40141705_40142860
seq2: B6Ng01-026I12.b_44_1170 (reverse)

seq1  AAAAAAAAGAGTTTTGCCCAAATGTCTCTCATTTTTGTTTTGAGTTTGCA  50
        |||||| ||  |||||  || |||| |||||    | ||||| |||||
seq2  --AAAAAAAAGGATTGCC--AAAGTCT-TCATT----TGTTGAG-TTGCA  40

seq1  TGTATCTGCCAATGACCTTGTCCTCATTAGTGAGTGTCTTCTTCAAGCGG  100
      |||||| ||  || | | ||||||||| ||||||  |||   || |||||
seq2  TGTATCGGC--AT-AGCCTGTCCTCATAAGTGAGGTTCT--CTCCAGCGG  85

seq1  GGGCTTCAATAGCTGCTACTGAGCAAAGACAATAGGGAGGGTTAAAGGAG  150
      |||||   |||| ||||||||||| ||| ||||||| |||  | ||||||
seq2  GGGCT--CATAG-TGCTACTGAGCCAAG-CAATAGGAAGG--TTAAGGAG  129

seq1  AGATTGGCTTACACGGGGACAAAGGGATGGAGATGCTTGTTTCTTGTACA  200
      ||| |||||||||| ||||| ||||||||||||||| |||||| ||||||
seq2  AGA-TGGCTTACAC-GGGAC-AAGGGATGGAGATGC-TGTTTC-TGTACA  174

seq1  ACAAGACGTGAAGGACATAAAAATATTTACTTAACAAAAGACTCAACTGC  250
         ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  --CAGACGTGAAGGACAT-AAAATATTTACTTAACAAAAGACTCAACTGC  221

seq1  AGGACACCAGCAAAATTCAAAAGTGGCTGACTACATGTGAAGCATGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCAGCAAAATTCAAAAGTGGCTGACTACATGTGAAGCATGAAAA  271

seq1  ATGTTTCCAGCTAGAGAATAGAAAGGAAAACTCAGAAAATGGCAAACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCAGCTAGAGAATAGAAAGGAAAACTCAGAAAATGGCAAACCTT  321

seq1  TGAAACTAGAAACAAGAAAACCATTAGGCATTACTGTTCGGTCAAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAGAAACAAGAAAACCATTAGGCATTACTGTTCGGTCAAACAGA  371

seq1  TTGAAACAGCATCCACTTGCCTAGCTCAGAGTGAGCTGTGTGTACTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAGCATCCACTTGCCTAGCTCAGAGTGAGCTGTGTGTACTGTGT  421

seq1  GTGCAATGTCAGTGCAGCCTGGCATAAGACAGGTGCCAGGTAAGTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGTCAGTGCAGCCTGGCATAAGACAGGTGCCAGGTAAGTGTCAA  471

seq1  CACCACCTTCCTCACTAAGTGACTGTCCAGAAGAGAGACTGTAGACTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTTCCTCACTAAGTGACTGTCCAGAAGAGAGACTGTAGACTCCT  521

seq1  ACTCATTTGTGTTCCCATCGTTCTGTGGAGAACTAGATTATCTGTTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTGTGTTCCCATCGTTCTGTGGAGAACTAGATTATCTGTTAGGC  571

seq1  ACTGGATGTTTGAGTGAGGAGAAGAAGAGAAGCGTAGCCTTAGTCTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGTTTGAGTGAGGAGAAGAAGAGAAGCGTAGCCTTAGTCTTCAG  621

seq1  TGACTGAATGGTGCCAGAAGACACCAGTGTGACAGCAGGACAAGGGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAATGGTGCCAGAAGACACCAGTGTGACAGCAGGACAAGGGACTC  671

seq1  TTACAACTAGCAACCTCAAGGGAAGAAAGAGCTGGCACCTTCCCCATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTAGCAACCTCAAGGGAAGAAAGAGCTGGCACCTTCCCCATCTG  721

seq1  TGGTGGCTGTTCCTGGTTGTCAACATGACTACATTTGGAATTGACTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTGTTCCTGGTTGTCAACATGACTACATTTGGAATTGACTAAAA  771

seq1  CCCAAGAGGTTAGGTACACCTGTGAGGGATTTTTTTTATTATTAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGGTTAGGTACACCTGTGAGGGATTTTTTTTATTATTAATTAAT  821

seq1  TATTTATAATTTTTTATTATTAATTAAATCATTTGAAGTGGGAAGACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAATTTTTTATTATTAATTAAATCATTTGAAGTGGGAAGACCCA  871

seq1  CTTTTAATCTGTAACTCTTGAGGTTAGAAGATACACCTTTAATGCAGATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCTGTAACTCTTGAGGTTAGAAGATACACCTTTAATGCAGATC  921

seq1  TTTTGAGATGGGAAGATCCAGATTTTAATCTGGCCACTGGTAGCCTAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATGGGAAGATCCAGATTTTAATCTGGCCACTGGTAGCCTAGAT  971

seq1  AAAGGACATGGAAGAAGGAAAGCTTACTCTCTTCTGCCTGCTTGCTCCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACATGGAAGAAGGAAAGCTTACTCTCTTCTGCCTGCTTGCTCCTA  1021

seq1  CTTTCATTAGCAAGTCCATTCCTTCACTGGCATTACAGCCTACTTCTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTAGCAAGTCCATTCCTTCACTGGCATTACAGCCTACTTCTTCA  1071

seq1  GGACTCCAGTGTATACTGAAAATGATCTGAGAGATCCAGCATTGTAGACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGTGTATACTGAAAATGATCTGAGAGATCCAGCATTGTAGACT  1121

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1127

seq1: chr6_39986723_39987760
seq2: B6Ng01-026I12.g_66_1095

seq1  GAATTCTCTCTTAAGTCACAAATTCTCCACTGTGTACACAGAGCTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTAAGTCACAAATTCTCCACTGTGTACACAGAGCTGGGAT  50

seq1  CTTGATATCTCTGTCTGTCTGTCCTCATATTGGAGCTTCTGACATCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATCTCTGTCTGTCTGTCCTCATATTGGAGCTTCTGACATCCTGG  100

seq1  AGCCTGAAGTTACATGGTTAGTGGATGTCATTGGCTCCACAGGAAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGTTACATGGTTAGTGGATGTCATTGGCTCCACAGGAAAGAGC  150

seq1  AGAGAACAAGCCTAGCTGGACAGGGCAGGGGTGGCTGACAGTGGAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAGCCTAGCTGGACAGGGCAGGGGTGGCTGACAGTGGAAGGGT  200

seq1  AGGAGAAAGCCCAAGTCAGAGAGGACTCAGCTGAGGCTGACACTCAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGCCCAAGTCAGAGAGGACTCAGCTGAGGCTGACACTCAGCTC  250

seq1  TGTTCTATGCTGATCACAGCAGAAGTATGAGTCTCATGGTGGCATCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGCTGATCACAGCAGAAGTATGAGTCTCATGGTGGCATCCTAG  300

seq1  CCAAGGGCCAGAACATCTGGAAAGTGTGAGGCGTCCCCTCCCTGTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCCAGAACATCTGGAAAGTGTGAGGCGTCCCCTCCCTGTTCTAA  350

seq1  ATGGACAGTCATCCCCCATCCAACAGTTGTTGATAAGATTTTTTATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGTCATCCCCCATCCAACAGTTGTTGATAAGATTTTTTATCCTG  400

seq1  TCCCTGAAGATGGATTTCAGAAACTCAGAATTTTATGAAGAAATTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAGATGGATTTCAGAAACTCAGAATTTTATGAAGAAATTTTATG  450

seq1  TGGCTGTATTACATTTGAAACTTAGCTTCCATCTAATTACATCATGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTATTACATTTGAAACTTAGCTTCCATCTAATTACATCATGGTGA  500

seq1  TTTAGAGGCAGCCTCTAGTGGAGGTTAACTCAACACAACTATTCCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGCAGCCTCTAGTGGAGGTTAACTCAACACAACTATTCCTGTTT  550

seq1  TGAAGGGAATAAACTTTAGATGTATGGAAGCTTCTCACTTCTTTTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAATAAACTTTAGATGTATGGAAGCTTCTCACTTCTTTTCCTGT  600

seq1  TACTATAGCGGAGTACCCCCAGCTGGGTAACTTATGAAGAAATTAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAGCGGAGTACCCCCAGCTGGGTAACTTATGAAGAAATTAGGTTT  650

seq1  ATTTTGTCCTGTGGTACTAGAAAGTACAAAACCACAGGCCCAGTTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCTGTGGTACTAGAAAGTACAAAACCACAGGCCCAGTTCCTTC  700

seq1  TCAGCTTCTGTTGCCCCGTGCTTCATCAG-TTCATCCTAGAAGGAGTGGG  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGCTTCTGTTGCCCCGTGCTTCATCAGTTTCATCCTAGAAGGAGTGGG  750

seq1  GAGGCACGAAGACACGTGGGGAAAGGCAAAACCTGAGGGAACAGTCATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACGAAGACACGTGGGGAAAGGCAAAACCTGAGGGAACAGTCATCC  800

seq1  CTTACCACAACCTGGCCTAGCATGAACCCCTCTGTCTTGTGAGAGCAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACAACCTGGCCTAGCATGAACCCCTCTGTCTTGTGAGAGCAAGC  850

seq1  CCTCACTCACACTCCAGAGGTCTCAGGCCCACCAAAGTCTTCTGTGAGGC  899
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  CCTCACTCACACTCCAGAGGTCTCA-GCCCA-CAAAGTCTTCTGTGAGGC  898

seq1  TCTTCCTTCCACTGTACCACATCCACCTTGGGGACCAAGTTTAGCGTGTG  949
      |||||||||||||||| ||||| ||||||||||| | |||||||||||||
seq2  TCTTCCTTCCACTGTA-CACAT-CACCTTGGGGA-CTAGTTTAGCGTGTG  945

seq1  TCTTGGTAGAGACAAACTGTAGCAAGAGCCAATCTGCGGAGATTCTGTTG  999
      ||||||||||||| ||||||||||||| |||||||||||||| || | | 
seq2  TCTTGGTAGAGAC-AACTGTAGCAAGAACCAATCTGCGGAGAATCCGGTT  994

seq1  TTTGTTTGCCCTTTATTTTCCTCCTTCCCCAACTCCACT  1038
       ||| |||||||||| ||| |||||| ||||||||||||
seq2  GTTG-TTGCCCTTTA-TTTACTCCTT-CCCAACTCCACT  1030