BAC Information

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BAC

Clone NameB6Ng01-026L10
Chromosome6 (Build37)
Map Location 37,545,964 - 37,699,406
singlet/doubletdoublet
Overlap geneYbx1-ps2
Upstream geneLOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026L10.bB6Ng01-026L10.g
ACCDH857673DH857674
length1,1971,029
definitionDH857673|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L10, 5' end.DH857674|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,545,964 - 37,547,187)(37,698,369 - 37,699,406)
sequence
gaattcattgtcatgcaataaattctgacaccactggaagagccaaatgt
gttcatctgtgtttctgacacagcacacacatgacaggcagaaagatgtg
ataccttttcctgccatcataagggccacagcaaacacttataaaaaaac
aaaaaacaaaacaaaacaaaacaaaaagacaaattaacaggagaaaaata
taatggatttatttcatcaaagtagcacatgagatttcagagacaaagtg
acccatggggaaatgatcagtgtatgcttacatttgataaggatgaatac
atgaatagaactggattggatggagaagatgcaaccttgtggtcccagac
taagaacgtaaacaaaacaagacctgtctaaattcttcaggcttctctgt
ccagctttcccttctctgaggtacaggacagaatccttcctcgaggcctt
ttgtcctatgtcctacaacataagtcagacagtacttttttatttttatt
tttttaaatggctgtctcttatacaaggaggtggggaagaatagagcagt
ggtcttcaccctgtggggtcacgacctctttgagggtcacatatcagata
ttctgcatatcagatatgtacagagctaacatgaggaactgtattaaaag
tctgcagtattaggaaagttgagggccactgggctagaaaaatacttttg
atttttttgagacaagatactctgtgtgccccaggtttacctccaattaa
tgattctcttctgtctccccagtgctaagattataggcatgagttacaac
acacaggatagagtaatatctatgggctatatggcttggtatgtgtgagt
cttgtctttatgatctgctatagagaagagaaattctggttttcataact
tgtctagagagagaaaggaggacctcctgaattcaggggaggccatgagg
gagtctttacattgtcattcagtcaaaggactgagcatgcctaagtgcac
tgtttgatctactacgttttgaagttcgccatcctaaacccaaaggccaa
aggataaaatgtgtaagataatgcatcatccaggttaaagcttaattgag
acaagaatatatgagcgagaagatcagggtactctgttaatatagtaatg
tggaacctaaatgggagtgtcagacttgggtctatgaggcaagacaa
gaattcttatctaaactaagagaaaaatgacgtaatactgagaaggctaa
gcttattccacgacagacttcaaattggcagttaaggagacaaggctaag
aacagggcaagcccaggcaagcccagggcattcgattactaatagaacct
cccccaggctccagccttcctgccgataatggctccagaatgcctagaga
aagagtaagatgaagctcacctgcctcaggattccagtgtgctttgaaat
gagcctgtgagctcacttggctgtctatctatcttggtaaagggagacct
cagcatgctgggcttctgcagaataaaaaactctctgcatttgcatagtg
tttgagtctgtggtaccattctttggcgaatcatgaacccttacagtact
tagagactggaaaaatgaatttatttacaggtcttgtcacagctagaaag
acagatactctcaatatgtttctgctttgctcaaagcaatgtcacaaagt
atagaaaagatgaaagaaaaaagccaggaaatgtaccgtgtcggtggtct
cctggaggatggcctgtgtaggaagtctctgagaatgagtcttcgtttgg
acagtagggctcccggaatttcctggaggacccctaatccctaggagcct
tcattaacacatgaatgcttgctgtttgttggacgaatagcagatttact
aagggccagctcaattcatttttttttttttaaatcattgacaaaccagg
agctaacacctaaatgttgtaaggcaaaaaaaaaaaaaaaaaaagttatt
ccgactcagccaaacttacagtctcctgcagagtggaggagggagaaaag
actgaagctgggagcctctttatgacaagtgagcaggtgactgcaacagt
ggaactttggtgttgctttatgatcgtgggaaggtacatgttatggtcag
acagttaatagaacataccaggaacagtttataagttatcaattctgaac
atggaaacatttacgatgtgtcaatgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37545964_37547187
seq2: B6Ng01-026L10.b_51_1247

seq1  GAATTCATTGTCATGCAATAAATTCTGACACCACTGGAAGAGCCAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCATGCAATAAATTCTGACACCACTGGAAGAGCCAAATGT  50

seq1  GTTCATCTGTGTTTCTGACACAGCACACACATGACAGGCAGAAAGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTGTGTTTCTGACACAGCACACACATGACAGGCAGAAAGATGTG  100

seq1  ATACCTTTTCCTGCCATCATAAGGGCCACAGCAAACACTTATAAAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTTCCTGCCATCATAAGGGCCACAGCAAACACTTATAAAAAAAC  150

seq1  AAAAAACAAAACAAAACAAAACAAAAAGACAAATTAACAGGAGAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAACAAAACAAAACAAAAAGACAAATTAACAGGAGAAAAATA  200

seq1  TAATGGATTTATTTCATCAAAGTAGCACATGAGATTTCAGAGACAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATTTATTTCATCAAAGTAGCACATGAGATTTCAGAGACAAAGTG  250

seq1  ACCCATGGGGAAATGATCAGTGTATGCTTACATTTGATAAGGATGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGGGAAATGATCAGTGTATGCTTACATTTGATAAGGATGAATAC  300

seq1  ATGAATAGAACTGGATTGGATGGAGAAGATGCAACCTTGTGGTCCCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGAACTGGATTGGATGGAGAAGATGCAACCTTGTGGTCCCAGAC  350

seq1  TAAGAACGTAAACAAAACAAGACCTGTCTAAATTCTTCAGGCTTCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACGTAAACAAAACAAGACCTGTCTAAATTCTTCAGGCTTCTCTGT  400

seq1  CCAGCTTTCCCTTCTCTGAGGTACAGGACAGAATCCTTCCTCGAGGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCCCTTCTCTGAGGTACAGGACAGAATCCTTCCTCGAGGCCTT  450

seq1  TTGTCCTATGTCCTACAACATAAGTCAGACAGTACTTTTTTATTTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTATGTCCTACAACATAAGTCAGACAGTACTTTTTTATTTTTATT  500

seq1  TTTTTAAATGGCTGTCTCTTATACAAGGAGGTGGGGAAGAATAGAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGGCTGTCTCTTATACAAGGAGGTGGGGAAGAATAGAGCAGT  550

seq1  GGTCTTCACCCTGTGGGGTCACGACCTCTTTGAGGGTCACATATCAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCACCCTGTGGGGTCACGACCTCTTTGAGGGTCACATATCAGATA  600

seq1  TTCTGCATATCAGATATGTACAGAGCTAACATGAGGAACTGTATTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATATCAGATATGTACAGAGCTAACATGAGGAACTGTATTAAAAG  650

seq1  TCTGCAGTATTAGGAAAGTTGAGGGCCACTGGGCTAGAAAAATACTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTATTAGGAAAGTTGAGGGCCACTGGGCTAGAAAAATACTTTTG  700

seq1  ATTTTTTTGAGACAAGATACTCTGTGTGCCCCAGGTTTACCTCCAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGAGACAAGATACTCTGTGTGCCCCAGGTTTACCTCCAATTAA  750

seq1  TGATTCTCTTCTGTCTCCCCAGTGCTAAGATTATAGGCATGAGTTACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCTTCTGTCTCCCCAGTGCTAAGATTATAGGCATGAGTTACAAC  800

seq1  ACACAGGATAGAGTAATATCTATGGGCTATATGGCTTGGTATGTGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATAGAGTAATATCTATGGGCTATATGGCTTGGTATGTGTGAGT  850

seq1  CTTGTCTTTATGATCTGCTATAGAGAAGAGAAATTCTGGTTTTCATAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTTATGATCTGCTATAGAGAAGAGAAATTCTGGTTTTCATAACT  900

seq1  TGTCTAGAGAGAGAAAGGAGGACCCCCTGAATTCAGGGGGAGGCCATGAG  950
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TGTCTAGAGAGAGAAAGGAGGACCTCCTGAATTCA-GGGGAGGCCATGAG  949

seq1  GGAGTCTTTACATTGTCATTCAGTTCAAAGGACTGAGCATGCCTAAGTGG  1000
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  GGAGTCTTTACATTGTCATTCAG-TCAAAGGACTGAGCATGCCTAAGT-G  997

seq1  CACTGTTTGATCTACTACGTTTTGAAGTTCGGCCATCCTAAACCCAAAAG  1050
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  CACTGTTTGATCTACTACGTTTTGAAGTTC-GCCATCCTAAACCC-AAAG  1045

seq1  GCCAAAGGAATAAAAATGTGTAAGATAAAATGCATCAATCACAGGTTAGA  1100
      |||||||||   ||||||||||||||  |||||||| ||| ||||||| |
seq2  GCCAAAGGA--TAAAATGTGTAAGAT--AATGCATC-ATC-CAGGTTA-A  1088

seq1  AGCTAGAGTGAAGACAAGATTAGTAATGAGCAGAGAAGATCAGGGTACTC  1150
      ||||  | || |||||||| ||   |||||| ||||||||||||||||||
seq2  AGCTTAATTG-AGACAAGAATA--TATGAGC-GAGAAGATCAGGGTACTC  1134

seq1  TGTTAAAATAGTTAAATGTGAGAACACTAGATGGGATGGTTCCAAAGCCC  1200
      |||||| |||||  |||||| |||| ||| ||||||  ||     || | 
seq2  TGTTAATATAGT--AATGTG-GAAC-CTAAATGGGAGTGT----CAGACT  1176

seq1  TGGGTCCCTATGTAGGCAAGACAA  1224
      |||||  ||||| |||||||||||
seq2  TGGGT--CTATG-AGGCAAGACAA  1197

seq1: chr6_37698369_37699406
seq2: B6Ng01-026L10.g_67_1095 (reverse)

seq1  TGTCATTGACACATCGTAAATTGTTTCCATTGTTCCAAGAATTGATTGAC  50
      |||||||||||||||||||| |||||||| |||||  |||||||||    
seq2  TGTCATTGACACATCGTAAA-TGTTTCCA-TGTTC--AGAATTGATAACT  46

seq1  TATAAACTGTTTCCTGGTATGTTCTATTAACTGTCTGACCATAACATGTA  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTG-TTCCTGGTATGTTCTATTAACTGTCTGACCATAACATGTA  95

seq1  CCTTTCCCACGATCATAAAGGCAACACCAAGGTTCCACTGTTGCAGTCAC  150
      || |||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CC-TTCCCACGATCATAAA-GCAACACCAAAGTTCCACTGTTGCAGTCAC  143

seq1  CTGCTCACTTGTCATAAAGAGGCTCCCAGCTTTCAGTCTTCTCTCCCTTC  200
      |||||||||||||||||||||||||||||| ||||||||| ||||||| |
seq2  CTGCTCACTTGTCATAAAGAGGCTCCCAGC-TTCAGTCTTTTCTCCCTCC  192

seq1  TCCACTCTGCAGGAGACTGTAAGTTTGGCTGTGTCGGAATAACTTTTTTT  250
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TCCACTCTGCAGGAGACTGTAAGTTTGGCTGAGTCGGAATAAC-TTTTTT  241

seq1  TTTTTTTTTTTTTGCCTTACAACATTTAGGTGTTAGCTCCTGGTTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGCCTTACAACATTTAGGTGTTAGCTCCTGGTTTGTCA  291

seq1  ATGATTTAAAAAAAAAAAAATGAATTGAGCTGGCCCTTAGTAAATCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAAAAAAAAAAAAATGAATTGAGCTGGCCCTTAGTAAATCTGCT  341

seq1  ATTCGTCCAACAAACAGCAAGCATTCATGTGTTAATGAAGGCTCCTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTCCAACAAACAGCAAGCATTCATGTGTTAATGAAGGCTCCTAGGG  391

seq1  ATTAGGGGTCCTCCAGGAAATTCCGGGAGCCCTACTGTCCAAACGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGTCCTCCAGGAAATTCCGGGAGCCCTACTGTCCAAACGAAGAC  441

seq1  TCATTCTCAGAGACTTCCTACACAGGCCATCCTCCAGGAGACCACCGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCAGAGACTTCCTACACAGGCCATCCTCCAGGAGACCACCGACA  491

seq1  CGGTACATTTCCTGGCTTTTTTCTTTCATCTTTTCTATACTTTGTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACATTTCCTGGCTTTTTTCTTTCATCTTTTCTATACTTTGTGACAT  541

seq1  TGCTTTGAGCAAAGCAGAAACATATTGAGAGTATCTGTCTTTCTAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAGCAAAGCAGAAACATATTGAGAGTATCTGTCTTTCTAGCTGT  591

seq1  GACAAGACCTGTAAATAAATTCATTTTTCCAGTCTCTAAGTACTGTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACCTGTAAATAAATTCATTTTTCCAGTCTCTAAGTACTGTAAGG  641

seq1  GTTCATGATTCGCCAAAGAATGGTACCACAGACTCAAACACTATGCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGATTCGCCAAAGAATGGTACCACAGACTCAAACACTATGCAAAT  691

seq1  GCAGAGAGTTTTTTATTCTGCAGAAGCCCAGCATGCTGAGGTCTCCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGTTTTTTATTCTGCAGAAGCCCAGCATGCTGAGGTCTCCCTTT  741

seq1  ACCAAGATAGATAGACAGCCAAGTGAGCTCACAGGCTCATTTCAAAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATAGATAGACAGCCAAGTGAGCTCACAGGCTCATTTCAAAGCAC  791

seq1  ACTGGAATCCTGAGGCAGGTGAGCTTCATCTTACTCTTTCTCTAGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATCCTGAGGCAGGTGAGCTTCATCTTACTCTTTCTCTAGGCATT  841

seq1  CTGGAGCCATTATCGGCAGGAAGGCTGGAGCCTGGGGGAGGTTCTATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCATTATCGGCAGGAAGGCTGGAGCCTGGGGGAGGTTCTATTAG  891

seq1  TAATCGAATGCCCTGGGCTTGCCTGGGCTTGCCCTGTTCTTAGCCTTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGAATGCCCTGGGCTTGCCTGGGCTTGCCCTGTTCTTAGCCTTGTC  941

seq1  TCCTTAACTGCCAATTTGAAGTCTGTCGTGGAATAAGCTTAGCCTTCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACTGCCAATTTGAAGTCTGTCGTGGAATAAGCTTAGCCTTCTCA  991

seq1  GTATTACGTCATTTTTCTCTTAGTTTAGATAAGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  GTATTACGTCATTTTTCTCTTAGTTTAGATAAGAATTC  1029