BAC Information

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BAC

Clone NameB6Ng01-027B04
Chromosome6 (Build37)
Map Location 47,812,749 - 47,971,898
singlet/doubletdoublet
Overlap geneZfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786
Downstream geneZfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B04.bB6Ng01-027B04.g
ACCDH857919DH857920
length273870
definitionDH857919|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B04, 5' end.DH857920|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,971,626 - 47,971,898)(47,812,749 - 47,813,618)
sequence
tttttttgaaaggtgagtcatggcagttttagagaagccagctcctgagg
caggaaggctggtgggggaattgcttgcagaggcaaaaagaacactttca
attgtgaggagaggacatttaagtccaaccaagcagctgctttgtgctcc
tgttgtgacagtgacatctcaaaagcaagacagactttcagatttctaag
tcccctggagttactgggccccatgtgcatagaggccagagagagaaagt
gggtgcttttttgtttgggtttt
gaattcagggccagctagagctacataacaaacacaaaaaggaaaagaag
gacgttttaaagaatcaataatgctatgttcaacaaatgaacatggttat
attacctttaaagagatgtatttattattttatgtgtatgaatgttttgc
ctgcatgtatgtatgtgtactacatgcccaagaaggtcagaagaggctgt
tggaattgcaattaaagatggttgcttactaggaatcgaaaccaggttct
ctgcgtgttcaacaagtgccttaaccattgaaccagcactcagcacaatt
tcaccatctaattcaagtccctgaagaccactctctctttttctccacaa
atagagcctggcctttcaacctcagatattctgtcttggattaaacaaga
ggaagaacctcaggttggagtctcccaggagtctaaagagagtgagctgt
acaaaggtacctatgctggtgagtaacagagaaaacagatactcagatcc
gcttatacaagaggagactgaagaatgcagctaaaatggtgctagaaaga
caaggaacagagaggaagaaaagaaagatatggttagccaaattaggaat
gaaaccaaaaggccaccaggataaactttaaataggaaaacacattaaaa
aaaaaaacattaatttattagtgtgtgtggaggcacatacacagatcaga
gaacagcttgtgggagttggttctcttcttctactatatggtcctagaaa
ttaaacacaggttgtcaggctttgatggcaagtgcatttacccactgagt
catcccaccagcctcgaaagcttactctaaattagaactgttggggctgg
gtttatcagtgaagaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47971626_47971898
seq2: B6Ng01-027B04.b_49_321 (reverse)

seq1  AAAACCCAAACAAAAAAGCACCCACTTTCTCTCTCTGGCCTCTATGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAACAAAAAAGCACCCACTTTCTCTCTCTGGCCTCTATGCACA  50

seq1  TGGGGCCCAGTAACTCCAGGGGACTTAGAAATCTGAAAGTCTGTCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCAGTAACTCCAGGGGACTTAGAAATCTGAAAGTCTGTCTTGCT  100

seq1  TTTGAGATGTCACTGTCACAACAGGAGCACAAAGCAGCTGCTTGGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATGTCACTGTCACAACAGGAGCACAAAGCAGCTGCTTGGTTGGA  150

seq1  CTTAAATGTCCTCTCCTCACAATTGAAAGTGTTCTTTTTGCCTCTGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGTCCTCTCCTCACAATTGAAAGTGTTCTTTTTGCCTCTGCAAG  200

seq1  CAATTCCCCCACCAGCCTTCCTGCCTCAGGAGCTGGCTTCTCTAAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCCCACCAGCCTTCCTGCCTCAGGAGCTGGCTTCTCTAAAACTG  250

seq1  CCATGACTCACCTTTCAAAAAAA  273
      |||||||||||||||||||||||
seq2  CCATGACTCACCTTTCAAAAAAA  273

seq1: chr6_47812749_47813618
seq2: B6Ng01-027B04.g_68_937

seq1  GAATTCAGGGCCAGCTAGAGCTACATAACAAACACAAAAAGGAAAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCAGCTAGAGCTACATAACAAACACAAAAAGGAAAAGAAG  50

seq1  GACGTTTTAAAGAATCAATAATGCTATGTTCAACAAATGAACATGGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTTAAAGAATCAATAATGCTATGTTCAACAAATGAACATGGTTAT  100

seq1  ATTACCTTTAAAGAGATGTATTTATTATTTTATGTGTATGAATGTTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTTAAAGAGATGTATTTATTATTTTATGTGTATGAATGTTTTGC  150

seq1  CTGCATGTATGTATGTGTACTACATGCCCAAGAAGGTCAGAAGAGGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTATGTATGTGTACTACATGCCCAAGAAGGTCAGAAGAGGCTGT  200

seq1  TGGAATTGCAATTAAAGATGGTTGCTTACTAGGAATCGAAACCAGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGCAATTAAAGATGGTTGCTTACTAGGAATCGAAACCAGGTTCT  250

seq1  CTGCGTGTTCAACAAGTGCCTTAACCATTGAACCAGCACTCAGCACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGTTCAACAAGTGCCTTAACCATTGAACCAGCACTCAGCACAATT  300

seq1  TCACCATCTAATTCAAGTCCCTGAAGACCACTCTCTCTTTTTCTCCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCTAATTCAAGTCCCTGAAGACCACTCTCTCTTTTTCTCCACAA  350

seq1  ATAGAGCCTGGCCTTTCAACCTCAGATATTCTGTCTTGGATTAAACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCTGGCCTTTCAACCTCAGATATTCTGTCTTGGATTAAACAAGA  400

seq1  GGAAGAACCTCAGGTTGGAGTCTCCCAGGAGTCTAAAGAGAGTGAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACCTCAGGTTGGAGTCTCCCAGGAGTCTAAAGAGAGTGAGCTGT  450

seq1  ACAAAGGTACCTATGCTGGTGAGTAACAGAGAAAACAGATACTCAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTACCTATGCTGGTGAGTAACAGAGAAAACAGATACTCAGATCC  500

seq1  GCTTATACAAGAGGAGACTGAAGAATGCAGCTAAAATGGTGCTAGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATACAAGAGGAGACTGAAGAATGCAGCTAAAATGGTGCTAGAAAGA  550

seq1  CAAGGAACAGAGAGGAAGAAAAGAAAGATATGGTTAGCCAAATTAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAGAGAGGAAGAAAAGAAAGATATGGTTAGCCAAATTAGGAAT  600

seq1  GAAACCAAAAGGCCACCAGGATAAACTTTAAATAGGAAAACACATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAAAGGCCACCAGGATAAACTTTAAATAGGAAAACACATTAAAA  650

seq1  AAAAAAACATTAATTTATTAGTGTGTGTGGAGGCACATACACAGATCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATTAATTTATTAGTGTGTGTGGAGGCACATACACAGATCAGA  700

seq1  GAACAGCTTGTGGGAGTTGGTTCTCTTCTTCTACTATATGGGTCCTAGAA  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAACAGCTTGTGGGAGTTGGTTCTCTTCTTCTACTATAT-GGTCCTAGAA  749

seq1  ATTAAACACAGGTTGTCAGGC-TTGATGGCAAGTGCATTTACCCACTGAG  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTAAACACAGGTTGTCAGGCTTTGATGGCAAGTGCATTTACCCACTGAG  799

seq1  TCATCCCACCAGCCTCGAAAGCTTACTCTAAATTAGAACTGTTGGGGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCACCAGCCTCGAAAGCTTACTCTAAATTAGAACTGTTGGGGCTG  849

seq1  GGTATATCAGTGAAGAAAGTG  870
      ||| |||||||||||||||||
seq2  GGTTTATCAGTGAAGAAAGTG  870