MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-027O01
Chromosome	6 (Build37)
Map Location	3,708,017 - 3,846,015
singlet/doublet	doublet
Overlap gene	Calcr, LOC100039942
Upstream gene	LOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662, Ccdc132
Downstream gene	Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039885 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100039896 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039896
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	LOC100040185 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins pseudo : _no_value

name	EG667335 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667335 MGI:3647057
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins pseudo : _no_value

name	Samd9l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209086 MGI:1343184
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 96 ESTs, 4 Proteins

name	AI987662 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101202 MGI:2141520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc132 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73288 MGI:1920538
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calcr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12311 MGI:101950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039942 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039942
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Tfpi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21789 MGI:108543
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gngt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14699 MGI:109165
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gng11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66066 MGI:1913316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930528H21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78034 MGI:1925284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Bet1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12068 MGI:1343104
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667381 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC100039965 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039965
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Col1a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12843 MGI:88468
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Casd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213819 MGI:2384865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sgce (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20392 MGI:1329042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Peg10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170676 MGI:2157785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040018 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 30 ESTs, 10 Proteins

name	Samd9l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377053 GeneID:209086 MGI:1343184
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 96 ESTs, 4 Proteins product : sterile alpha motif domain containing 9-like, transcript variant 1 transcript_id : XM_620286.3

name	AI987662 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375470 GeneID:101202 MGI:2141520
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI987662 transcript_id : NM_178899.4

name	Ccdc132 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353064 GeneID:73288 MGI:1920538
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 132 transcript_id : NM_024260.4

name	Calcr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181178 GeneID:12311 MGI:101950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcitonin receptor transcript_id : NM_007588.2

name	Calcr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181168 GeneID:12311 MGI:101950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcitonin receptor transcript_id : NM_001042725.1

name	Tfpi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382435 GeneID:21789 MGI:108543
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tissue factor pathway inhibitor 2 transcript_id : NM_009364.3

name	Gngt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366390 GeneID:14699 MGI:109165
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 transcript_id : NM_010314.2

name	Gng11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254516 GeneID:66066 MGI:1913316
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), gamma 11 transcript_id : NM_025331.2

name	4930528H21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254848 GeneID:78034 MGI:1925284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930528H21 gene transcript_id : XM_001474660.1

name	Bet1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542222 GeneID:12068 MGI:1343104
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : blocked early in transport 1 homolog (S. cerevisiae) transcript_id : NM_009748.2

name	Col1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111120328 GeneID:12843 MGI:88468
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type I, alpha 2 transcript_id : NM_007743.2

name	Casd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37620156 GeneID:213819 MGI:2384865
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CAS1 domain containing 1 transcript_id : NM_145398.2

name	Sgce (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981493 GeneID:20392 MGI:1329042
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sarcoglycan, epsilon transcript_id : NM_011360.2

name	Peg10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:98985811 GeneID:170676 MGI:2157785
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs product : paternally expressed 10 transcript_id : NM_001040611.1

name	LOC100040018 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254836 GeneID:100040018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 30 ESTs, 10 Proteins product : similar to Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg) From Mus Musculus At 1.50 A Resolution transcript_id : XM_001473951.1

name	Samd9l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63540653 GeneID:209086 MGI:1343184
definition	codon_start : 1 product : sterile alpha motif domain containing 9-like isoform 1 protein_id : XP_620286.1

name	AI987662 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725744 GeneID:101202 MGI:2141520
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC101202 protein_id : NP_849230.1

name	Ccdc132 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62751932 GeneID:73288 MGI:1920538
definition	codon_start : 1 exception : mismatches in translation note : Bcl2-like product : coiled-coil domain containing 132 protein_id : NP_077222.3

name	Calcr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181169 GeneID:12311 MGI:101950
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform b precursor is encoded by transcript variant b product : calcitonin receptor isoform b precursor protein_id : NP_001036190.1

name	Calcr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181179 GeneID:12311 MGI:101950
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform a precursor is encoded by transcript variant a product : calcitonin receptor isoform a precursor protein_id : NP_031614.2

name	Tfpi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678311 CCDS:CCDS19892.1 GeneID:21789 MGI:108543
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0030414 - protease inhibitor activity [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0007596 - blood coagulation [Evidence IEA] codon_start : 1 product : tissue factor pathway inhibitor 2 protein_id : NP_033390.1

name	Gngt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563258 GeneID:14699 MGI:109165
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003924 - GTPase activity [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : guanine nucleotide binding protein (G protein), gamma 1 subunit product : guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 protein_id : NP_034444.1

name	Gng11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384698 GeneID:66066 MGI:1913316
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : guanine nucleotide binding protein gamma 11 protein_id : NP_079607.1

name	4930528H21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254849 GeneID:78034 MGI:1925284
definition	codon_start : 1 product : hypothetical protein LOC78034 protein_id : XP_001474710.1

name	Bet1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753182 CCDS:CCDS19895.1 GeneID:12068 MGI:1343104
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0000139 - Golgi membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA] [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence TAS] codon_start : 1 note : golgi vesicular membrane trafficking protein p18 product : blocked early in transport 1 homolog protein_id : NP_033878.1

name	Col1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111120329 GeneID:12843 MGI:88468
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence NAS] codon_start : 1 note : osteogenesis imperfecta; collagen COL1A2 product : procollagen, type I, alpha 2 protein_id : NP_031769.2

name	Casd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37620157 CCDS:CCDS19896.1 GeneID:213819 MGI:2384865
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : O-acetyltransferase protein_id : NP_663373.2

name	Sgce (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981494 GeneID:20392 MGI:1329042
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0016012 - sarcoglycan complex [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : epsilon-Sarcoglycan splicing variant 3A product : sarcoglycan, epsilon protein_id : NP_035490.2

name	Peg10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:98985812 GeneID:170676 MGI:2157785
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform RF1 is encoded by transcript variant 1; MyEF-3 like; embryonal carcinoma differentiation regulated product : paternally expressed 10 isoform RF1 protein_id : NP_001035701.1

name	LOC100040018 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254837 GeneID:100040018
definition	codon_start : 1 product : similar to Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg) From Mus Musculus At 1.50 A Resolution protein_id : XP_001474001.1

name	LOC100039885 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039885
definition	number : 2 pseudo : _no_value

name	LOC100039885 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039885
definition	number : 1 pseudo : _no_value

name	LOC100039896 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039896
definition	number : 1 pseudo : _no_value

name	LOC100039942 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039942
definition	number : 1 pseudo : _no_value

name	LOC667381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667381
definition	number : 1 pseudo : _no_value

name	LOC667381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667381
definition	number : 2 pseudo : _no_value

name	LOC667381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667381
definition	number : 3 pseudo : _no_value

name	LOC100039965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039965
definition	number : 1 pseudo : _no_value

name	LOC100039965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039965
definition	number : 2 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:271733
definition	standard_name : PMC18810P1

name	(CDS detail)
type	STS
link
xref	UniSTS:273240
definition	standard_name : PMC350564P1

name	(CDS detail)
type	STS
link
xref	UniSTS:270439
definition	standard_name : PMC123151P1

name	(CDS detail)
type	STS
link
xref	UniSTS:270982
definition	standard_name : PMC140912P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271251
definition	standard_name : PMC153210P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271203
definition	standard_name : PMC152246P1

name	(CDS detail)
type	STS
link
xref	UniSTS:143011
definition	standard_name : AA175286

name	(CDS detail)
type	STS
link
xref	UniSTS:165450
definition	standard_name : AI987662

name	(CDS detail)
type	STS
link
xref	UniSTS:122786
definition	standard_name : 04.MMHAP6FLB1.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:116580
definition	standard_name : D6Mit231

name	(CDS detail)
type	STS
link
xref	UniSTS:207921
definition	standard_name : C87205

name	(CDS detail)
type	STS
link
xref	UniSTS:224970
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:495961
definition	standard_name : Calcr

name	(CDS detail)
type	STS
link
xref	UniSTS:179336
definition	standard_name : AV000670

name	(CDS detail)
type	STS
link
xref	UniSTS:235382
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:185653
definition	standard_name : AW555236

name	(CDS detail)
type	STS
link
xref	UniSTS:123902
definition	standard_name : 30.MMHAP31FLB6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:209685
definition	standard_name : RH126557

name	(CDS detail)
type	STS
link
xref	UniSTS:213525
definition	standard_name : RH130238

name	(CDS detail)
type	STS
link
xref	UniSTS:116318
definition	standard_name : D6Mit86

name	(CDS detail)
type	STS
link
xref	UniSTS:116581
definition	standard_name : D6Mit84

name	(CDS detail)
type	STS
link
xref	UniSTS:116319
definition	standard_name : D6Mit138

name	(CDS detail)
type	STS
link
xref	UniSTS:265065
definition	standard_name : Col1a2

name	(CDS detail)
type	STS
link
xref	UniSTS:155082
definition	standard_name : GDB:180350

name	(CDS detail)
type	STS
link
xref	UniSTS:151144
definition	standard_name : D7S2150E

name	(CDS detail)
type	STS
link
xref	UniSTS:154850
definition	standard_name : GDB:177260

name	(CDS detail)
type	STS
link
xref	UniSTS:159478
definition	standard_name : AA960264

name	(CDS detail)
type	STS
link
xref	UniSTS:159479
definition	standard_name : AF031919

name	(CDS detail)
type	STS
link
xref	UniSTS:144397
definition	standard_name : Sgce

name	(CDS detail)
type	STS
link
xref	UniSTS:489595
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:479194
definition	standard_name : Peg10

name	(CDS detail)
type	STS
link
xref	UniSTS:273401
definition	standard_name : PMC60235P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271847
definition	standard_name : PMC197179P1

name	(CDS detail)
type	STS
link
xref	UniSTS:162504
definition	standard_name : RH125750

name	(CDS detail)
type	STS
link
xref	UniSTS:159480
definition	standard_name : AI324845

name	LOC100040185 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254843 GeneID:100040185
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : similar to COX11 homolog, cytochrome c oxidase assembly protein (yeast) pseudo : _no_value transcript_id : XR_031747.1

name	EG667335 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254835 GeneID:667335 MGI:3647057
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : predicted gene, EG667335 pseudo : _no_value transcript_id : XR_002008.2

clone name	MSMg01-477M07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-198H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339N23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-495N24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-421O03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-490L03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-532P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165N09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-027O01.b	B6Ng01-027O01.g
ACC	DH858504	DH858505
length	944	662
definition	DH858504\|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O01, 5' end.	DH858505\|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O01, 3' end.
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(3,708,017 - 3,708,964)	(3,845,354 - 3,846,015)
sequence	gaattcactgccaaaaaatgtcagtgcaacaatacagttaaatattggtt acagaaacattggttgcactgcgctgaacgaggtgctttatttctttgag aacgaactccttgtggttaaagaatccaaactattctcatacagaggaca ctgatgtgcatggtttctttaaatagaaacttccatcagaacagagcaaa gtcaagtggtcacaggtgccaacaggtgttggcagctgagcggagctacg ggcaccatctagggagaacagtgggctcccagatgttatcttgcaagcca gctcagtgtctggacttttactacattctttgatgagcattttctctttt aaattcatgtttttttttttcaggattagaagtaaaaccacattctaaac acacacacacacacacacaccccattgctcttaagaaactgatttgagaa aattgtacttaactgtattaatgaacatatatcaatgggaatttctacaa attcatcttcaatgtttcaacctcatgatttacttgaataaaaaacaaag tttcaagctctgtaaccccaccataggtctgttttctaaccttacacatt aaagccagagcataggattttctgtgttttgatcaaatctaaaacaatgt aggaccaccttaacaaccttaacaacagaaaatatttaccatctgggttg ttttgttgttgttgttgttgtttttttttatcatttggagctcagcaaga tcacattcacactgaaagatacataacctgtcatataccaaaccatgctt ttattatactcaagatggaaaaaatgccatgcctgctttaattaatcatc tattatttatgcttatttttactagatgcaacatattaaggacaggatat gactttttatgtacggcagacttaaatccctggttgggatttaa	gaattctcttgaattagaactattactagcagtaaatcaatagattcaga gctaattttctagaaataaaattcagaataatttgttttgttttgtttct ccttagggtaacccagaaagccttgaacatgcactgtagtctaaatgtga actcgtgatcctcctgtcctgcctcttcctccccaggtttcctggtattc accacacctggcttcagagtacattttaatggaacaaaataggagtagag catctactttggaatattaacagtttgccgttttgtctctgctgttaatt gattttcttatcatggggcactcaagtggtgctttgcttttgttctgaag atggtgtaacgcgccacagaaaatctaaagagaactcaataatcactgtg gcttgaaagtgtgaatatacaattctgtgcagacaagctaagcattagta atgaatgctgaaagagtttcttttaaaaaacagccatctgaacactatgt cctaaggaacagaaccaagtctgactctcattttaaattgtaatcaatga gaggatggttgaagcatgaggaattttgtactcattataaagaatctccg tcaataacatcttgacaagatcttctacaaaccaattttgtaaaacctgg ctaatttatatt
quality values	Open. Hide. 61 41 34 33 61 27 20 61 33 61 61 38 22 50 55 55 55 38 38 38 43 43 43 47 49 41 36 28 27 41 27 20 36 28 41 37 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 44 59 59 59 55 44 55 43 61 52 59 59 61 61 61 61 55 55 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 59 61 61 61 61 61 61 61 61 61 61 59 59 61 55 59 59 61 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 49 61 59 55 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 55 59 59 59 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 49 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 50 61 61 61 61 61 50 61 61 61 61 61 37 61 61 61 61 61 61 61 50 61 61 61 61 61 55 55 61 61 38 61 55 55 55 53 53 61 61 61 61 50 61 61 61 61 61 53 52 61 61 61 61 53 52 53 36 53 53 61 61 61 61 61 50 50 61 53 61 61 61 39 43 43 31 50 50 42 61 50 52 61 61 29 61 53 52 52 47 50 53 53 61 61 61 31 53 43 53 45 61 61 61 61 61 47 43 53 38 45 61 21 61 45 61 53 43 61 61 29 57 57 52 47 52 53 28 53 45 53 42 53 53 38 45 45 31 38 45 45 53 36 57 57 53 53 50 30 53 53 57 28 48 38 53 47 22 53 28 47 53 53 53 45 50 37 25 45 43 40 36 42 36 53 32 45 42 52 53 32 53 57 57 41 31 42 24 47 10 17 52 33 30 53 45 52 53 57 34 18 17 41 8 47 34 36 28 11 16 39 21 43 29 12 36 29 17 23 47 23 43 53 28 53 37 43 46 52 57 17 19 15 8 21 25 19 52 12 34 30 46 13 45 40 42 42 25 50 21 28 37 22 21 37 28 37 13 22 50 50 24 31 9 20 33 41 24 53 39 36 42 31 42 33 13 38 23 35 32 13 15 42 31 29 17 31 31 37 30 38 16 18 28 14 9 24 24 33 42 36 31 36 53 26 36 18 21 20 19 12 23 21 27 24 27 9 34 18 19 18 23 23 53 53 36 14 7 16 26 14 35 32 36 23 29 34 29 16 28 47 33 28 20 6 14 11 23 13 30 33 34 35 26 28 13 12 32 34 48 33 14 17 27 25 34 23 18 39 47 45 47 47 25 31 35 31 14 32 22 31 18 6 29 13 24 24 21 29 21 17 24 29 29 23 16 29 11 20 30 28 15 28 13 29 19 35 38 47 45 20 13 28 30 19 18 14 13 14 7 20 16 29 8 29 29 16 29 21 35 22 9 9 8 34 9 12 14 26 29 14 16 15 23 9 21 8	Open. Hide. 59 59 59 43 52 15 14 27 12 19 12 13 11 13 20 16 5 27 34 34 61 61 61 59 61 61 61 59 61 59 59 59 59 59 59 61 61 61 59 61 59 59 59 61 61 61 61 59 49 52 29 32 27 23 25 28 35 37 31 28 33 30 59 61 61 59 61 59 59 59 59 61 61 59 59 44 61 61 61 55 59 61 61 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 59 61 49 59 55 59 59 59 61 59 61 61 59 59 59 59 61 61 61 45 59 59 59 43 52 61 61 61 61 61 59 59 59 61 59 59 61 59 61 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 61 59 61 61 59 61 61 59 59 52 59 52 44 59 52 44 59 61 59 45 45 61 59 52 59 59 59 61 59 52 52 59 44 52 61 59 59 59 59 52 59 59 59 59 59 36 55 44 35 52 52 39 59 49 49 59 61 59 59 59 59 59 59 61 61 59 59 61 59 59 59 61 59 59 59 59 59 49 59 61 59 59 61 59 61 61 61 61 61 59 59 59 59 59 59 59 59 59 59 61 61 59 61 59 61 61 49 49 41 52 24 21 18 22 23 20 10 8 31 25 59 59 59 59 59 59 52 45 41 44 59 59 59 59 61 59 59 59 59 59 59 59 59 59 59 59 49 49 52 59 52 59 61 52 61 59 59 52 33 50 31 36 39 52 39 59 45 59 59 52 59 59 45 59 59 59 59 31 31 29 29 31 33 59 61 52 61 61 59 59 59 52 45 40 36 49 39 52 49 59 45 59 35 59 37 35 44 52 61 49 59 59 52 45 61 59 59 59 59 59 59 59 49 59 52 59 59 59 52 61 59 59 45 39 24 17 52 43 36 41 12 12 9 10 18 11 26 18 19 15 22 12 18 25 23 10 30 28 45 43 59 43 43 45 59 59 59 44 31 12 10 18 13 19 59 59 61 59 59 59 59 36 41 45 45 37 33 43 52 45 52 45 45 49 52 41 45 49 59 38 41 18 23 20 13 22 24 27 52 59 61 59 59 52 52 45 59 59 40 41 23 22 21 24 37 43 59 59 19 24 19 12 13 20 28 10 18 23 52 13 19 18 11 23 11 43 43 37 41 31 43 36 40 43 27 52 43 52 52 49 52 52 21 40 55 49 43 13 28 13 9 17 32 13 24 30 37 28 28 26 61 49 24 24 22 9 21 12 11 10 27 11 25 43 38 26 30 55 55 50 43 38 36 33 32 34 26 18 30 32 32 49 34 43 32 26 23 37 31 15 13 14 10 22 21 25 25 35 13 16 16 14 14 37 49 14 16 13 8 19 19 31 35 27 19 29 31 37 37 31 35 22 27 18 14 8 10 13 16 11 9 9 20 18 10 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr6_3708017_3708964
seq2: B6Ng01-027O01.b_43_986

seq1  GAATTCACTGCCAAAAAATGTCAGTGCAACAATACAGTTAAATATTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCAAAAAATGTCAGTGCAACAATACAGTTAAATATTGGTT  50

seq1  ACAGAAACATTGGTTGCACTGCGCTGAACGAGGTGCTTTATTTCTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACATTGGTTGCACTGCGCTGAACGAGGTGCTTTATTTCTTTGAG  100

seq1  AACGAACTCCTTGTGGTTAAAGAATCCAAACTATTCTCATACAGAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACTCCTTGTGGTTAAAGAATCCAAACTATTCTCATACAGAGGACA  150

seq1  CTGATGTGCATGGTTTCTTTAAATAGAAACTTCCATCAGAACAGAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGCATGGTTTCTTTAAATAGAAACTTCCATCAGAACAGAGCAAA  200

seq1  GTCAAGTGGTCACAGGTGCCAACAGGTGTTGGCAGCTGAGCGGAGCTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGGTCACAGGTGCCAACAGGTGTTGGCAGCTGAGCGGAGCTACG  250

seq1  GGCACCATCTAGGGAGAACAGTGGGCTCCCAGATGTTATCTTGCAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATCTAGGGAGAACAGTGGGCTCCCAGATGTTATCTTGCAAGCCA  300

seq1  GCTCAGTGTCTGGACTTTTACTACATTCTTTGATGAGCATTTTCTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTCTGGACTTTTACTACATTCTTTGATGAGCATTTTCTCTTTT  350

seq1  AAATTCATGTTTTTTTTTTTCAGGATTAGAAGTAAAACCACATTCTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGTTTTTTTTTTTCAGGATTAGAAGTAAAACCACATTCTAAAC  400

seq1  ACACACACACACACACACACCCCATTGCTCTTAAGAAACTGATTTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACCCCATTGCTCTTAAGAAACTGATTTGAGAA  450

seq1  AATTGTACTTAACTGTATTAATGAACATATATCAATGGGAATTTCTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACTTAACTGTATTAATGAACATATATCAATGGGAATTTCTACAA  500

seq1  ATTCATCTTCAATGTTTCAACCTCATGATTTACTTGAATAAAAAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTTCAATGTTTCAACCTCATGATTTACTTGAATAAAAAACAAAG  550

seq1  TTTCAAGCTCTGTAACCCCACCATAGGTCTGTTTTCTAACCTTACACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCTCTGTAACCCCACCATAGGTCTGTTTTCTAACCTTACACATT  600

seq1  AAAGCCAGAGCATAGGATTTTCTGTGTTTTGATCAAATCTAAAACAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGAGCATAGGATTTTCTGTGTTTTGATCAAATCTAAAACAATGT  650

seq1  AGGACCACCTTAACAACCTTAACAACAGAAAATA-TTACCATCTGGGTTG  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGACCACCTTAACAACCTTAACAACAGAAAATATTTACCATCTGGGTTG  700

seq1  TTTTGTTGTTGTTGTTGTTGTTTTTTTTTATCATTTGGAGCTCAGCAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTGTTGTTGTTGTTTTTTTTTATCATTTGGAGCTCAGCAAGA  750

seq1  TCACATTCACACTGAAAGATACATAA-CTGTCATATACCAAACCATGCTT  798
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCACATTCACACTGAAAGATACATAACCTGTCATATACCAAACCATGCTT  800

seq1  TTAATTATACTCAAGATGGAAAAAATGCCAATGCCTGCTTTAAATAATCA  848
      || |||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TT-ATTATACTCAAGATGGAAAAAATGCC-ATGCCTGCTTTAATTAATCA  848

seq1  TCTATTTATTTATGCTTATTTTTTACTAGATGCAACATATTAAGGACAAG  898
      |||| ||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TCTA-TTATTTATGCTTA-TTTTTACTAGATGCAACATATTAAGGAC-AG  895

seq1  GATATGACTTTTTATGTACTGGCAGACTTAAATCACTGGTTGGCATTTAA  948
      ||||||||||||||||||| |||||||||||||| |||||||| ||||||
seq2  GATATGACTTTTTATGTAC-GGCAGACTTAAATCCCTGGTTGGGATTTAA  944

seq1: chr6_3845354_3846015
seq2: B6Ng01-027O01.g_61_722 (reverse)

seq1  AATATAAATTAGCCAGGTTTTAC-AAATTGGTTTGTAAGAAGATCTTGTC  49
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  AATATAAATTAGCCAGGTTTTACAAAATTGGTTTGT-AGAAGATCTTGTC  49

seq1  AAGATGTTATTGACGGAGATTCTTTATAATGAGTACAAAATTCCTCATGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTATTGACGGAGATTCTTTATAATGAGTACAAAATTCCTCATGC  99

seq1  TTCAACCATCCTCTCATTGATTACAATTTAAAATGAGAGTCAGACTTGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCATCCTCTCATTGATTACAATTTAAAATGAGAGTCAGACTTGGT  149

seq1  TCTGTTCCTTAGGACATAGTGTTCAGATGGCTGTTTTTTAAAAGAAACTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTTAGGACATAGTGTTCAGATGGCTGTTTTTTAAAAGAAACTC  199

seq1  TTTCAGCATTCATTACTAATGCTTAGCTTGTCTGCACAGAATTGTATATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATTCATTACTAATGCTTAGCTTGTCTGCACAGAATTGTATATT  249

seq1  CACACTTTCAAGCCACAGTGATTATTGAGTTCTCTTTAGATTTTCTGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCAAGCCACAGTGATTATTGAGTTCTCTTTAGATTTTCTGTGG  299

seq1  CGCGTTACACCATCTTCAGAACAAAAGCAAAGCACCACTTGAGTGCCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTACACCATCTTCAGAACAAAAGCAAAGCACCACTTGAGTGCCCCA  349

seq1  TGATAAGAAAATCAATTAACAGCAGAGACAAAACGGCAAACTGTTAATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGAAAATCAATTAACAGCAGAGACAAAACGGCAAACTGTTAATAT  399

seq1  TCCAAAGTAGATGCTCTACTCCTATTTTGTTCCATTAAAATGTACTCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTAGATGCTCTACTCCTATTTTGTTCCATTAAAATGTACTCTGA  449

seq1  AGCCAGGTGTGGTGAATACCAGGAAACCTGGGGAGGAAGAGGCAGGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTGTGGTGAATACCAGGAAACCTGGGGAGGAAGAGGCAGGACAG  499

seq1  GAGGATCACGAGTTCACATTTAGACTACAGTGCATGTTCAAGGCTTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCACGAGTTCACATTTAGACTACAGTGCATGTTCAAGGCTTTCTG  549

seq1  GGTTACCCTAAGGAGAAACAAAACAAAACAAATTATTCTGAATTTTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCCTAAGGAGAAACAAAACAAAACAAATTATTCTGAATTTTATTT  599

seq1  CTAGAAAATTAGCTCTGAATCTATTGATTTACTGCTAGTAATAGTTCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAATTAGCTCTGAATCTATTGATTTACTGCTAGTAATAGTTCTAA  649

seq1  TTCAAGAGAATTC  662
      |||||||||||||
seq2  TTCAAGAGAATTC  662

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