BAC Information

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BAC

Clone NameB6Ng01-028F03
Chromosome6 (Build37)9 (Build37)
Map Location 18,835,448 - 18,835,96895,819,396 - 95,820,542
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028F03.bB6Ng01-028F03.g
ACCDH858828DH858829
length9621,131
definitionDH858828|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F03, 5' end.DH858829|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(95,819,396 - 95,820,542)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatctttcacttccttcgttagagtcacgccgagatattttatattatt
tgtggctatgag
gaattcaagaaggaataaaagaaaagaacatggaagaacattgcccctag
ttaactaccagtctcatatttacctaactttcttatgctggacagaccca
cctccccaaggataataccacccttagtgcagtgggcactcctacagcaa
ttagcaatcaaaaaaaaaaaatgtccatatacatagccacaagccagtgt
gagacagtttctcacttgaggttccctgtcctcaggtgtgtcaaattgat
aactaaaggaaccaggacagtggcactacctgtattagttccttgggagg
ttgagacaaaaagatgacataataagcctaggactttggggccagctttg
ctaacatagcaaggccaccttttaagaaatagacaggaaggaggaggaaa
gaaagggagaaggagagaaaagaaagaattattactgattttgcaaatca
aaaattcctgaataactgaaaataggctaagaaaacatatatatggtata
gactgtttttgttttgttttgttttaatgttgtaagtaactttcttaaat
ctttctattggatagcctatgcaggctccaactgtccatgtctcatacca
aaaatctcagggtttttttttggaagtgctttactttgccttaaattagt
tctcttttgtttgatcttgttttaagttaaacatacagataattttatag
agaactggttattattgggcaattaacccttttctaatatatgccaaaat
tcattttatcacaaaaaaataatttttaaaaatatctatcagaaataatt
agtggagggctagcaaaatgctcattgggtaaagacatctgatgccaaat
cttactgagctgggctcagtctcaataacccacatggtagaagaatgaat
ccacatccagtatttgatttttaccttcatgtgtgttctgtgatatatat
tcatcagcacactaaataaatgaataaatggatgaatgaataattatata
agtttcttaggtagttttgttcagttggctgctggtggtatttttgggaa
cgagcctgctaggatcctgatggctcaactcaaaaaaatacctgcccctt
cctctagaagtgctggataaaggttatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-028F03.b_42_563 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCCAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||| |||||||||||| |||||||||||||||||||||| |||
seq2  GGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| |||||||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      |||||| ||| ||||||||||||||||||||||||| |||||||||||||
seq2  AGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||| |||||||||||||||||||| |||| ||||||||
seq2  CTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chr9_95819396_95820542
seq2: B6Ng01-028F03.g_67_1197

seq1  GAATTCAAGAAGGAATAAAAGAAAAGAACATGGAAGAACATTGCCCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGGAATAAAAGAAAAGAACATGGAAGAACATTGCCCCTAG  50

seq1  TTAACTACCAGTCTCATATTTACCTAACTTTCTTATGCTGGACAGACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACCAGTCTCATATTTACCTAACTTTCTTATGCTGGACAGACCCA  100

seq1  CCTCCCCAAGGATAATACCACCCTTAGTGCAGTGGGCACTCCTACAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAAGGATAATACCACCCTTAGTGCAGTGGGCACTCCTACAGCAA  150

seq1  TTAGCAATCAAAAAAAAAAAATGTCCATATACATAGCCACAAGCCAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATCAAAAAAAAAAAATGTCCATATACATAGCCACAAGCCAGTGT  200

seq1  GAGACAGTTTCTCACTTGAGGTTCCCTGTCCTCAGGTGTGTCAAATTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTTTCTCACTTGAGGTTCCCTGTCCTCAGGTGTGTCAAATTGAT  250

seq1  AACTAAAGGAACCAGGACAGTGGCACTACCTGTATTAGTTCCTTGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGGAACCAGGACAGTGGCACTACCTGTATTAGTTCCTTGGGAGG  300

seq1  TTGAGACAAAAAGATGACATAATAAGCCTAGGACTTTGGGGCCAGCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAAAAAGATGACATAATAAGCCTAGGACTTTGGGGCCAGCTTTG  350

seq1  CTAACATAGCAAGGCCACCTTTTAAGAAATAGACAGGAAGGAGGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATAGCAAGGCCACCTTTTAAGAAATAGACAGGAAGGAGGAGGAAA  400

seq1  GAAAGGGAGAAGGAGAGAAAAGAAAGAATTATTACTGATTTTGCAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGAAGGAGAGAAAAGAAAGAATTATTACTGATTTTGCAAATCA  450

seq1  AAAATTCCTGAATAACTGAAAATAGGCTAAGAAAACATATATATGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTGAATAACTGAAAATAGGCTAAGAAAACATATATATGGTATA  500

seq1  GACTGTTTTTGTTTTGTTTTGTTTTAATGTTGTAAGTAACTTTCTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTTGTTTTGTTTTGTTTTAATGTTGTAAGTAACTTTCTTAAAT  550

seq1  CTTTCTATTGGATAGCCTATGCAGGCTCCAACTGTCCATGTCTCATACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTGGATAGCCTATGCAGGCTCCAACTGTCCATGTCTCATACCA  600

seq1  AAAATCTCAGGGTTTTTTTTTGGAAGTGCTTTACTTTGCCTTAAATTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCAGGGTTTTTTTTTGGAAGTGCTTTACTTTGCCTTAAATTAGT  650

seq1  TCTCTTTTGTTTGATCTTGTTTTAAGTTAAACATACAGATAATTTTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGTTTGATCTTGTTTTAAGTTAAACATACAGATAATTTTATAG  700

seq1  AGAACTGGTTATTATTGGGCAATTAACCCTTTTCTAATATATGCCAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGTTATTATTGGGCAATTAACCCTTTTCTAATATATGCCAAAAT  750

seq1  TCATTTTATCACAAAAAAATAATTTTTAAAAATATCTATCAGAAATAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATCACAAAAAAATAATTTTTAAAAATATCTATCAGAAATAATT  800

seq1  AGTGGAGGGCTAGCAAAATGCTCATTGGGTAAAGACATCTGATGCCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGGCTAGCAAAATGCTCATTGGGTAAAGACATCTGATGCCAAAT  850

seq1  CTTACTGAGCTGGGCTCAGTCTCAATAACCCACATGGTAGAAGAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTACTGAGCTGGGCTCAGTCTCAATAACCCACATGGTAGAAG-AATGAA  899

seq1  TCCACATCCAGTAATTTGATTTTTTACCTTCATGTGTGTCCTGTGATATA  950
      |||||||||||| |||||| ||||||||||||||||||| ||||||||||
seq2  TCCACATCCAGT-ATTTGA-TTTTTACCTTCATGTGTGTTCTGTGATATA  947

seq1  TATTCATCAGCACACTAAATAAATGAATAAATGGATGAATGAATAAATAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATTCATCAGCACACTAAATAAATGAATAAATGGATGAATGAATAATTAT  997

seq1  ATAAGTTTCTTTAGGTAGTTTTTGTTCAGTTGGTTGCTTGGTTGGTATTT  1050
      ||||||||| |||||||| |||||||||||||| ||||  | ||||||||
seq2  ATAAGTTTC-TTAGGTAG-TTTTGTTCAGTTGGCTGCT--GGTGGTATTT  1043

seq1  TTGTGACAGAGTCTTGCTATGTATCCCTGATGGCCTCAAACTCATAAAAA  1100
      ||| ||  ||| | ||||| | || |||||||| ||| |||||| |||||
seq2  TTGGGAACGAG-CCTGCTA-GGAT-CCTGATGG-CTC-AACTCAAAAAAA  1088

seq1  TACACCTGCCCCTTCCTCTCTGAGTGCTGGGATTAAGGGTTATGCTG  1147
      |  ||||||||||||||||   ||||||||   ||| ||||||||||
seq2  T--ACCTGCCCCTTCCTCTAGAAGTGCTGG--ATAAAGGTTATGCTG  1131