BAC Information

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BAC

Clone NameB6Ng01-028F19
Chromosome6 (Build37)
Map Location 4,456,457 - 4,644,853
singlet/doubletdoublet
Overlap geneCol1a2, Casd1, Sgce
Upstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
Downstream genePeg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028F19.bB6Ng01-028F19.g
ACCDH858860DH858861
length1,1521,054
definitionDH858860|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F19, 5' end.DH858861|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,456,457 - 4,457,628)(4,643,787 - 4,644,853)
sequence
gaattccaattaaagacttcccaggtccatggagtaatttacatttctgg
gccatatgtaaagaacccagatggtgtatcttgagaagcgggctgcttcg
gcctcagcttttatcttctgaatagtcaaagcagcgtcccaatccattac
ctgatcatggaaatggtaacttttaactaaaataagctctgttcacttac
acttcaacaagttcccacctgtaatcacacacgaaaacaacagatgtgag
aaatatcaacttcgtcctgagattcaagagcctggggattcttctcagga
gtctcttactcgtttaccatgtgacttcaaatgaatcaattgggcctttt
tctaaaatgtggggtatatactaaatgtgccaacttcgaggctattttcc
atttctaggttgtataactaactagaatttcctgaagaaagaatgaagaa
aaccacttgggtttcatcttttaaaatggctgcctaatttaactggacaa
agatgttggcttgatgagtattcaggagggcgtggccacacccagacctt
cagctacacgccccacgtctgccacagcctaattttgaatgtgtatatat
tcctttcatccacttttatatacccctcgaggatactaagaagtaattgc
attgtacaaattaatgttacaagttaattttatatgaaaccagagtaaga
ggggatccccacagaaaaatatagtagacttagggaagtagagatttgaa
ggtcaacatacattttattcaacatccaaccactaagaacaataaaggtt
atccaacacacattgtccaaaatggctcacaaactgagtaattaaaaggc
acgtttccaaagcctgtaaggcttactggcttctcttaattcagcaaact
gttcttccttcaatggagaaataaactagacataccatttatctaattga
cagtgattctcatcaattgccctaaaatgtgatgcagaggtgtcccactc
ttctgagcagtgaccacttcaacagatgttctcattccaatgaacacttt
gtgacccccaaattcagcaatttttagggtgatatcttggcagtctgacc
gccaatattgcaattgatcttattatttactgtaggaatgaaactcagtc
tt
gaattctttccctgcaatgctcagggtactcttcaagaaaacatgttttg
cttcattcttggtgaacaaataatacttttttcttgtgttaacgtctgag
ctgaagagaagagatctgaaagaaaaccaaacacagaggggtctgtgtgc
ttgggaccctgacagaaatgctcagtgaaatagtgaaattggcagagagc
tcggctcctcagggtgtaatgtcataattgcattatgtgaaaatcaaatg
aagagccattacttacagctattattttagggttaggcttattttcttaa
caaatttatctgaaggagaatcttattgtaagtagtctaatataatgatc
aggacatatagcacttagctggtttgaattcaaggaatgcatgaaatata
agttccagaccttcatatagaatggaaagagtgcttggtacacctaagca
ctcagtaaatactggtagaataaaagaatggacaacagaagccctacatg
aatcactgctttgagagcccaggctcctatctcagagatgactctagtta
agccctcaattcaaaaggataaatcctgctttcaggggtaaattgttttt
tgtattttttttccctccagtgttttcaattttcctaaaggataacttga
gagtttcatatttttgcagtgtttatgtcatggttggtgccgatgttgca
ttttcttcttgtttacgagaagttgaaaatccacagaatcagttaagatg
cagtcaagaaatggagcctgtgataacatgcgacaaaaagttccgaactc
actttcatatcgactggtgcaagatttcactggtgagtttttgtttggtt
gtttttttaactttgcttttgcaatttaattagcagtgatgtgtctggac
ataccatttgactggaacccgaattgctgttggaaataaatcctagtttt
cttgtcactggttggacttccttgatttgatggatttgacgaattagatg
atggttcgtcctggtaggagcgtccgccactttgtacctgcactgatagc
tgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4456457_4457628
seq2: B6Ng01-028F19.b_37_1188

seq1  GAATTCCAATTAAAGACTTCCCAGGTCCATGGAGTAATTTACATTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTAAAGACTTCCCAGGTCCATGGAGTAATTTACATTTCTGG  50

seq1  GCCATATGTAAAGAACCCAGATGGTGTATCTTGAGAAGCGGGCTGCTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGTAAAGAACCCAGATGGTGTATCTTGAGAAGCGGGCTGCTTCG  100

seq1  GCCTCAGCTTTTATCTTCTGAATAGTCAAAGCAGCGTCCCAATCCATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTTTTATCTTCTGAATAGTCAAAGCAGCGTCCCAATCCATTAC  150

seq1  CTGATCATGGAAATGGTAACTTTTAACTAAAATAAGCTCTGTTCACTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATGGAAATGGTAACTTTTAACTAAAATAAGCTCTGTTCACTTAC  200

seq1  ACTTCAACAAGTTCCCACCTGTAATCACACACGAAAACAACAGATGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACAAGTTCCCACCTGTAATCACACACGAAAACAACAGATGTGAG  250

seq1  AAATATCAACTTCGTCCTGAGATTCAAGAGCCTGGGGATTCTTCTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAACTTCGTCCTGAGATTCAAGAGCCTGGGGATTCTTCTCAGGA  300

seq1  GTCTCTTACTCGTTTACCATGTGACTTCAAATGAATCAATTGGGCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTACTCGTTTACCATGTGACTTCAAATGAATCAATTGGGCCTTTT  350

seq1  TCTAAAATGTGGGGTATATACTAAATGTGCCAACTTCGAGGCTATTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGTGGGGTATATACTAAATGTGCCAACTTCGAGGCTATTTTCC  400

seq1  ATTTCTAGGTTGTATAACTAACTAGAATTTCCTGAAGAAAGAATGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGGTTGTATAACTAACTAGAATTTCCTGAAGAAAGAATGAAGAA  450

seq1  AACCACTTGGGTTTCATCTTTTAAAATGGCTGCCTAATTTAACTGGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTGGGTTTCATCTTTTAAAATGGCTGCCTAATTTAACTGGACAA  500

seq1  AGATGTTGGCTTGATGAGTATTCAGGAGGGCGTGGCCACACCCAGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGGCTTGATGAGTATTCAGGAGGGCGTGGCCACACCCAGACCTT  550

seq1  CAGCTACACGCCCCACGTCTGCCACAGCCTAATTTTGAATGTGTATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACACGCCCCACGTCTGCCACAGCCTAATTTTGAATGTGTATATAT  600

seq1  TCCTTTCATCCACTTTTATATACCCCTCGAGGATACTAAGAAGTAATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATCCACTTTTATATACCCCTCGAGGATACTAAGAAGTAATTGC  650

seq1  ATTGTACAAATTAATGTTACAAGTTAATTTTATATGAAACCAGAGTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAAATTAATGTTACAAGTTAATTTTATATGAAACCAGAGTAAGA  700

seq1  GGGGATCCCCACAGAAAAATATAGTAGACTTAGGGAAGTAGAGATTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCCCCACAGAAAAATATAGTAGACTTAGGGAAGTAGAGATTTGAA  750

seq1  GGTCAACATACATTTTATTCAACATCCAACCACTAAGAACAATAAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACATACATTTTATTCAACATCCAACCACTAAGAACAATAAAGGTT  800

seq1  ATCCAACACACATTGTCCAAAATGGCTCACAAACTGAGTAATTAAAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACACACATTGTCCAAAATGGCTCACAAACTGAGTAATTAAAAGGC  850

seq1  ACGTTTCCAAAGCCTGTAAGGCTTACTGGCTTCTCTTAATTCAGGCAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACGTTTCCAAAGCCTGTAAGGCTTACTGGCTTCTCTTAATTCA-GCAAAC  899

seq1  TGTTCTTCCTTCAATGGAGAAAATAAACTAGACATACCATTTATCTAATT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTCTTCCTTCAATGGAG-AAATAAACTAGACATACCATTTATCTAATT  948

seq1  GAACAGTGATTCTCATCAATTGCCCTAAAATGTGAATGCAGGAGGTGTCC  1000
      | |||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  G-ACAGTGATTCTCATCAATTGCCCTAAAATGTG-ATGCA-GAGGTGTCC  995

seq1  CACTCTTCTGAGCAGTGACCACTTCAACAGATGTTCTCATTCCAAATGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  CACTCTTCTGAGCAGTGACCACTTCAACAGATGTTCTCATTCC-AATGA-  1043

seq1  ACACTTTGTGACCACCAAATTCAAGCAATTTTTAGGGGTGAATCATCCTG  1100
      ||||||||||||| |||||||| ||||||||||| ||||||   ||| ||
seq2  ACACTTTGTGACCCCCAAATTC-AGCAATTTTTA-GGGTGA--TATCTTG  1089

seq1  GAGCAAGTCTGACCGCAATTATATGCCACATGATCCTGTAATTATTATAC  1150
      |    ||||||||||| |  ||||  ||  |||||   | |||||| |||
seq2  G---CAGTCTGACCGCCA--ATATTGCAATTGATC---TTATTATT-TAC  1130

seq1  TGTAGGAATGAAACTCAGTCTT  1172
      ||||||||||||||||||||||
seq2  TGTAGGAATGAAACTCAGTCTT  1152

seq1: chr6_4643787_4644853
seq2: B6Ng01-028F19.g_67_1120 (reverse)

seq1  GACAGCTAATCAAGTGCAGGGTACAAAGGTGGCGAGACGCTCCCTTACAT  50
      ||||||| ||| |||||| |||||||| |||||| ||||||||  |||  
seq2  GACAGCT-ATC-AGTGCA-GGTACAAA-GTGGCG-GACGCTCC--TACCA  43

seq1  GGACGGACCATCATCTAATTCGTCAAATCCATCAAATCAAGGAAGTCCAC  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGACGAACCATCATCTAATTCGTCAAATCCATCAAATCAAGGAAGTCCAA  93

seq1  ACAGTTGACAAAGAAAACCTAGGATTTATTTCCAACAGCAATTCGGGTTC  150
       ||| |||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CCAG-TGAC-AAGAAAA-CTAGGATTTATTTCCAACAGCAATTCGGGTTC  140

seq1  CAGTCAAATGGTATGTCCAGACACATCACTGCTAATTAAATTTGCAAAAG  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGTCAAATGGTATGTCCAGACACATCACTGCTAATTAAA-TTGCAAAAG  189

seq1  CAAAGTTAAAAAAAACAACCAAACAAAAAACTCACCAGTGAAATCTTGCA  250
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CAAAGTT-AAAAAAACAACCAAAC-AAAAACTCACCAGTGAAATCTTGCA  237

seq1  CCAGTCGATATGAAAGTGAGTTCGGAACTTTTTGTCGCATGTTATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCGATATGAAAGTGAGTTCGGAACTTTTTGTCGCATGTTATCACAG  287

seq1  GCTCCATTTCTTGACTGCATCTTAACTGATTCTGTGGATTTTCAACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTTCTTGACTGCATCTTAACTGATTCTGTGGATTTTCAACTTCT  337

seq1  CGTAAACAAGAAGAAAATGCAACATCGGCACCAACCATGACATAAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAACAAGAAGAAAATGCAACATCGGCACCAACCATGACATAAACACT  387

seq1  GCAAAAATATGAAACTCTCAAGTTATCCTTTAGGAAAATTGAAAACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATATGAAACTCTCAAGTTATCCTTTAGGAAAATTGAAAACACTG  437

seq1  GAGGGAAAAAAAATACAAAAAACAATTTACCCCTGAAAGCAGGATTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAAAAAATACAAAAAACAATTTACCCCTGAAAGCAGGATTTATC  487

seq1  CTTTTGAATTGAGGGCTTAACTAGAGTCATCTCTGAGATAGGAGCCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATTGAGGGCTTAACTAGAGTCATCTCTGAGATAGGAGCCTGGG  537

seq1  CTCTCAAAGCAGTGATTCATGTAGGGCTTCTGTTGTCCATTCTTTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAGCAGTGATTCATGTAGGGCTTCTGTTGTCCATTCTTTTATTC  587

seq1  TACCAGTATTTACTGAGTGCTTAGGTGTACCAAGCACTCTTTCCATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTATTTACTGAGTGCTTAGGTGTACCAAGCACTCTTTCCATTCTA  637

seq1  TATGAAGGTCTGGAACTTATATTTCATGCATTCCTTGAATTCAAACCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGTCTGGAACTTATATTTCATGCATTCCTTGAATTCAAACCAGC  687

seq1  TAAGTGCTATATGTCCTGATCATTATATTAGACTACTTACAATAAGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTATATGTCCTGATCATTATATTAGACTACTTACAATAAGATTC  737

seq1  TCCTTCAGATAAATTTGTTAAGAAAATAAGCCTAACCCTAAAATAATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGATAAATTTGTTAAGAAAATAAGCCTAACCCTAAAATAATAGC  787

seq1  TGTAAGTAATGGCTCTTCATTTGATTTTCACATAATGCAATTATGACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTAATGGCTCTTCATTTGATTTTCACATAATGCAATTATGACATT  837

seq1  ACACCCTGAGGAGCCGAGCTCTCTGCCAATTTCACTATTTCACTGAGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGAGGAGCCGAGCTCTCTGCCAATTTCACTATTTCACTGAGCAT  887

seq1  TTCTGTCAGGGTCCCAAGCACACAGACCCCTCTGTGTTTGGTTTTCTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGGGTCCCAAGCACACAGACCCCTCTGTGTTTGGTTTTCTTTC  937

seq1  AGATCTCTTCTCTTCAGCTCAGACGTTAACACAAGAAAAAAGTATTATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTTCTCTTCAGCTCAGACGTTAACACAAGAAAAAAGTATTATTT  987

seq1  GTTCACCAAGAATGAAGCAAAACATGTTTTCTTGAAGAGTACCCTGAGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCAAGAATGAAGCAAAACATGTTTTCTTGAAGAGTACCCTGAGCA  1037

seq1  TTGCAGGGAAAGAATTC  1067
      |||||||||||||||||
seq2  TTGCAGGGAAAGAATTC  1054