BAC Information

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BAC

Clone NameB6Ng01-028L24
Chromosome6 (Build37)
Map Location 50,527,780 - 50,670,267
singlet/doubletdoublet
Overlap gene4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf
Upstream geneLOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs
Downstream geneLOC100040877, EG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028L24.bB6Ng01-028L24.g
ACCDH859145DH859146
length9651,113
definitionDH859145|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L24, 5' end.DH859146|Mus musculus domesticus DNA, BAC clone: B6Ng01-028L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,669,671 - 50,670,267)(50,527,780 - 50,528,912)
sequence
gaattcacttagatgcatgcttaatcgctatgaaaagcaattgctgccca
gtcacctatcaatacaggtttctacagaagcctgaagaaggtatacctac
caagcagtgaaagtttatatagatatgctagtagttggatatttaaacaa
atcaaattttaacttaaatttacatgtgtgtgacatgtgtgtgtgcacgt
gcgcacacgcgtgtggtgtgtgagatatatatgaaattgtagttacccca
cttgaagagacaatgctcctccccaaaagacatagactgtctagcaaagc
ccccactgtcaggaaatccgggagacctcccaaaacattataagctattc
cctttggttacctcccagaaacttcaggtaagactctattgctccagatt
ccctatgccccagacacaggccttggaggaattgagctgggactatcctg
gaatcttcctcacaagggctagctctcctagtaccataaggagctgtgaa
aactgccaaggaagaaaagccatcgatagtgacagctacaaaccacaata
accagcagagcaagatatccccagagatgcaatggtagcattagatcctg
gggatagccatcagctgtctagttggacttaaggctctctcaatagaggg
aaatccatgcctagccctaaccaactacttctggctgctgaggccataga
ccctagagaagagcatactactgctgcttccctaaaccagtgtgatctct
aactgcatcctttttccttttttttaagatttatttattttatgtatgtg
agtacactgttgctctcttcagatgaaccagaagagagcatcagatctca
ttacagatggttttaagccaccatgtggttgctgggaattgaactcagac
ctctggaaaagcagtcagtgctcttaaccactgagccatctctccagcac
tctaagtacctgtgc
gaattcatacctgtaaaatcgtgagcatatgaagtgagccagtgagacct
ctcaagatttctctgtatattagcgtcctttgcagagctcattgtatccc
atggattcacagaggagttaggagcaaaggttttaggaggtttggggtag
aatactggcttgtttttctcaacaaatttaggaaactagaatatgaacat
aaagattgctgttattgattgtatatacctgaataaggactgtttcactg
tcccagcaagcacaagttgaggtcattttcttcattagttacaacattca
agccaggcatgttagtgtaactataaccatattttatcacaaagatgtaa
acatctcttctaaaagtctctgagaaccttggctggagtttgtccctgga
tgttctatcgctagtacagtctccttagacgccctgagggctctgtggac
tgctggctgcttttagccaacaatggctgctgctttgtgcctctccctga
caggaaaactgatgacgttggctatagctgatgaaaccttaagtcactca
aattcaaatataatggccattctatatatacagcggtatctttaactctc
taaagagttgtgcatataaacttggctagatgcattttagtgtgactcta
tttagtcagtgcctgggtatgcatacctgtggcgcgggcttgtgtgagtt
tatgtataccacccatgtgcagaagccccccaaagctagaaaaaggtgtt
gggtcacctgggactggagttacaggcagttgtggctgctgggaaacaaa
ctgggatcttcaggagagtaggatgccctctttctttatcgtttacatta
tctctagagctgcttatttgaaacaaacaaaacaaacactccaaaaccag
gaacttctcaaacactgtcctaagaggctaggctaatggacttaatctgg
ttgactataatcacctgctgggatgtagtctaggacaccagaaattagaa
agaaatgcaaattaagtgtggctggggttctggcagaagttaccaccagg
aactgttgatggggcatatgtaaagtgagagctttttgagggggctatgg
aaaggaactgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50669671_50670267
seq2: B6Ng01-028L24.b_47_643 (reverse)

seq1  GATCTAATGCTACCATTGCATCTCTGGGGATATCTTGCTCTGCTGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAATGCTACCATTGCATCTCTGGGGATATCTTGCTCTGCTGGTTAT  50

seq1  TGTGGTTTGTAGCTGTCACTATCGATGGCTTTTCTTCCTTGGCAGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGTAGCTGTCACTATCGATGGCTTTTCTTCCTTGGCAGTTTTC  100

seq1  ACAGCTCCTTATGGTACTAGGAGAGCTAGCCCTTGTGAGGAAGATTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCTTATGGTACTAGGAGAGCTAGCCCTTGTGAGGAAGATTCCAG  150

seq1  GATAGTCCCAGCTCAATTCCTCCAAGGCCTGTGTCTGGGGCATAGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCCAGCTCAATTCCTCCAAGGCCTGTGTCTGGGGCATAGGGAAT  200

seq1  CTGGAGCAATAGAGTCTTACCTGAAGTTTCTGGGAGGTAACCAAAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAATAGAGTCTTACCTGAAGTTTCTGGGAGGTAACCAAAGGGAA  250

seq1  TAGCTTATAATGTTTTGGGAGGTCTCCCGGATTTCCTGACAGTGGGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATAATGTTTTGGGAGGTCTCCCGGATTTCCTGACAGTGGGGGCT  300

seq1  TTGCTAGACAGTCTATGTCTTTTGGGGAGGAGCATTGTCTCTTCAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGACAGTCTATGTCTTTTGGGGAGGAGCATTGTCTCTTCAAGTGG  350

seq1  GGTAACTACAATTTCATATATATCTCACACACCACACGCGTGTGCGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTACAATTTCATATATATCTCACACACCACACGCGTGTGCGCACG  400

seq1  TGCACACACACATGTCACACACATGTAAATTTAAGTTAAAATTTGATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACACATGTCACACACATGTAAATTTAAGTTAAAATTTGATTTG  450

seq1  TTTAAATATCCAACTACTAGCATATCTATATAAACTTTCACTGCTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATCCAACTACTAGCATATCTATATAAACTTTCACTGCTTGGTA  500

seq1  GGTATACCTTCTTCAGGCTTCTGTAGAAACCTGTATTGATAGGTGACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACCTTCTTCAGGCTTCTGTAGAAACCTGTATTGATAGGTGACTGG  550

seq1  GCAGCAATTGCTTTTCATAGCGATTAAGCATGCATCTAAGTGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATTGCTTTTCATAGCGATTAAGCATGCATCTAAGTGAATTC  597

seq1: chr6_50527780_50528912
seq2: B6Ng01-028L24.g_65_1177

seq1  GAATTCATACCTGTAAAATCGTGAGCATATGAAGTGAGCCAGTGAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCTGTAAAATCGTGAGCATATGAAGTGAGCCAGTGAGACCT  50

seq1  CTCAAGATTTCTCTGTATATTAGCGTCCTTTGCAGAGCTCATTGTATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATTTCTCTGTATATTAGCGTCCTTTGCAGAGCTCATTGTATCCC  100

seq1  ATGGATTCACAGAGGAGTTAGGAGCAAAGGTTTTAGGAGGTTTGGGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCACAGAGGAGTTAGGAGCAAAGGTTTTAGGAGGTTTGGGGTAG  150

seq1  AATACTGGCTTGTTTTTCTCAACAAATTTAGGAAACTAGAATATGAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGCTTGTTTTTCTCAACAAATTTAGGAAACTAGAATATGAACAT  200

seq1  AAAGATTGCTGTTATTGATTGTATATACCTGAATAAGGACTGTTTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGCTGTTATTGATTGTATATACCTGAATAAGGACTGTTTCACTG  250

seq1  TCCCAGCAAGCACAAGTTGAGGTCATTTTCTTCATTAGTTACAACATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAAGCACAAGTTGAGGTCATTTTCTTCATTAGTTACAACATTCA  300

seq1  AGCCAGGCATGTTAGTGTAACTATAACCATATTTTATCACAAAGATGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCATGTTAGTGTAACTATAACCATATTTTATCACAAAGATGTAA  350

seq1  ACATCTCTTCTAAAAGTCTCTGAGAACCTTGGCTGGAGTTTGTCCCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTCTAAAAGTCTCTGAGAACCTTGGCTGGAGTTTGTCCCTGGA  400

seq1  TGTTCTATCGCTAGTACAGTCTCCTTAGACGCCCTGAGGGCTCTGTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATCGCTAGTACAGTCTCCTTAGACGCCCTGAGGGCTCTGTGGAC  450

seq1  TGCTGGCTGCTTTTAGCCAACAATGGCTGCTGCTTTGTGCCTCTCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGCTTTTAGCCAACAATGGCTGCTGCTTTGTGCCTCTCCCTGA  500

seq1  CAGGAAAACTGATGACGTTGGCTATAGCTGATGAAACCTTAAGTCACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAACTGATGACGTTGGCTATAGCTGATGAAACCTTAAGTCACTCA  550

seq1  AATTCAAATATAATGGCCATTCTATATATACAGCGGTATCTTTAACTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATATAATGGCCATTCTATATATACAGCGGTATCTTTAACTCTC  600

seq1  TAAAGAGTTGTGCATATAAACTTGGCTAGATGCATTTTAGTGTGACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTGTGCATATAAACTTGGCTAGATGCATTTTAGTGTGACTCTA  650

seq1  TTTAGTCAGTGCCTGGGTATGCATACCTGTGGCGCGGGCTTGTGTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAGTGCCTGGGTATGCATACCTGTGGCGCGGGCTTGTGTGAGTT  700

seq1  TATGTATACCACCCATGTGCAGAAGCCCCCCAAAGCTAGAAAAAGGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACCACCCATGTGCAGAAGCCCCCCAAAGCTAGAAAAAGGTGTT  750

seq1  GGGTCACCTGGGACTGGAGTTACAGGCAGTTGTGGCTGCTGGGAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCTGGGACTGGAGTTACAGGCAGTTGTGGCTGCTGGGAAACAAA  800

seq1  CTGGGATCTTCAGGAGAGTAGGATGCCCTCTTTCTTTATCGTTTACATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCTTCAGGAGAGTAGGATGCCCTCTTTCTTTATCGTTTACATTA  850

seq1  TCTCTAGAGCTGCTTATTTGAAAACAAAACAAAACAAAACACCCCAAAAC  900
      |||||||||||||||||||||||   ||||||||| |||||| |||||||
seq2  TCTCTAGAGCTGCTTATTTGAAA--CAAACAAAAC-AAACACTCCAAAAC  897

seq1  CAGGAACCTTCTTCAAACACTGTCCTAAGAGGCTAGGCTAATGGACTTTA  950
      |||||| |||| |||||||||||||||||||||||||||||||||||| |
seq2  CAGGAA-CTTC-TCAAACACTGTCCTAAGAGGCTAGGCTAATGGACTTAA  945

seq1  TCCTGGTTGAACTAATAATCACCTGCTGGAATGTAGTCTAGGACACAAGA  1000
      | ||||||| ||| ||||||||||||||| |||||||||||||||| |||
seq2  T-CTGGTTG-ACT-ATAATCACCTGCTGGGATGTAGTCTAGGACACCAGA  992

seq1  AATTAGATAGAAAATGCAAATTTAGTGTTGCCTGTGGTGTTCTGGCAAGG  1050
      ||||||| || ||||||||||| ||||| ||   ||| |||||||||  |
seq2  AATTAGAAAG-AAATGCAAATTAAGTGTGGC---TGGGGTTCTGGCA--G  1036

seq1  AGTTTACCAACCAGGAAACCTGTGAGTGGGGCATATGTTAAGGTGAGGCT  1100
      |  ||||| ||||||||  ||||   ||||||||||| ||| |||||   
seq2  AAGTTACC-ACCAGGAA--CTGTTGATGGGGCATATG-TAAAGTGAGAGC  1082

seq1  TTTTTGAGGGGGCTAGTGAGAGGGGAACTGATG  1133
      |||||||||||||||  || |  ||||||||||
seq2  TTTTTGAGGGGGCTATGGAAA--GGAACTGATG  1113