BAC Information

Click to search

BAC

Clone NameB6Ng01-028N22
Chromosome6 (Build37)
Map Location 18,835,442 - 18,835,968
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N22.bB6Ng01-028N22.g
ACCDH859232DH859233
length5411,248
definitionDH859232|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N22, 5' end.DH859233|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattcta

gaattcaaaagtaaggaagtcagattctgggtgaagcatgtttaaagata
gcataggccgggtatggctcatgctcaagcctcttactgagttctccaag
gaggtagacagctgggtagcttgccaagggaaggagcatgagcaaataga
aactgctgtagatgcacctgttgcagagagaaaggctgtaactgttcaag
agagtgagttttttaaaggcaaactttcctttgcactatgggacaatgag
aaaggtgtgctggagacaagaccctacctaccaaaggcttcaacttaaac
tgtcatgttgattgaatagcagggtgcctcaaaagtgaatgctgctgaag
ggctcccctgctgggaagccactgcctagaaaggtggtctcccaggttca
gctacagaggcacaaggaggccttcagctgtggtagaaggaagttagact
acatgatcttataagcatacaacatggaagaattatgagatcatggggga
ttttcaccaaggttataccaagtctgtgatgggatagaattccccacaaa
taggccatgagcgaagatgtgattgaacactaagtcaaaatcgagcccca
ggattttagagatgccaagactatgggatattggctgagaaaagttccac
attggagcgggcacaagagagaccaaagacgtgctacagacagtttaatt
agaggagcagggccatgtaaagctcttggaaccaaggcaatgccatcaag
agactttgatggcaaagaggagctgcagaactcaatgtttgtccaactgg
gtttgggtcctatctttgtctcaggttcttttcctgtcactgtgataaat
actcatacaagagcaactcaggagaggaaggtttgattctggtccagaat
tcatgtgacagtctatcatagtggaaggagtcacagcagcagagcttgaa
aggagctgagccttattgtaaactcagtcaagaaaaagagagagcaatga
ctacgtgatgttccgatcacccatgtttaactgatgcttcattcacatta
gccagagaaacataatcagcctggatgtccatccaccaaaacagtgaatg
aaaaaatataggcaggagatgtttaaggggttagctgctgtttacaacta
ggtactgagttaatctccaagaaccaatgtgacatggaagcaagtcccag
acgtgctctgtactacttacgagaagcttatctcccgctccgagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-028N22.b_42_569 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||| ||| ||||||||||||||||||||||||| |||||||
seq2  GGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||| |||||||||||||||||||| |||| ||
seq2  AAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||| ||||||
seq2  ATGGGGCTCAGAACTGAACAAGGAATTC  528


| Home | SequenceCutter | Blast | Download |