BAC Information

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BAC

Clone NameB6Ng01-029A12
Chromosome6 (Build37)
Map Location 53,748,975 - 53,749,996
singlet/doubletsinglet
Overlap genenone
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386
Downstream gene1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029A12.bB6Ng01-029A12.g
ACCDH859346DH859347
length1,2461,017
definitionDH859346|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A12, 5' end.DH859347|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgggaagcattagtattaggttttggaggtccgatgggtcca
gccatgaatccatctaggtggtgagttacttttaggtgaaagaattgttt
ttgatattggcctcactgcttgaggtcactttaaattgtcttggtttggt
ttggggacatcatttcatctaaaaagccatccatttgttttagattttcg
gaattataaaatatatgcttttaaaggtgtgtcctagtgagttctgagtt
tcatcagcatctttcacgactttcatctctaattttgtccactcaagact
tttgtttagcttggctaaggctttgtcaatctaatttaattttttttcaa
agaattgactctttgtttcattgtttttttttttttttctcattttcaca
ttgttaatgtctgtcctgatcttattattactttccttctactgatttga
ggcctggtttttcttgttttcccagttccctaggatatataaataagtta
cctacttgcaatttctctgatttcttaacatgggcacttactgcgataag
cttccttcttaagactgtaggggtttttttttagtttgtggtgttgttat
tttcagtttctaggaatgtattgactttctccttgatttcttcaagcacc
cgtgcaccagtgttatctcatctctgagatcctgcgcatgctctgctgtt
gcccttgctgatgatctggaaatttacggcgttgcaaatcaagagaatac
aagaagttgtgtcagttttcttgtgtatgtggagacttgctttgtgtttt
aagatatgatctaattagatcgtgatccagggctgctgagaaacagtgtg
tgctctacactggaatacttaagttcatttgacccatgataccattagct
gtttctctgttaatttcaacttattactttattttatttggctgtttgtc
ttaataagacagggtctcactgtggttaccctgtctgccctggatcttat
aagtaaacgagctggtgttgaactcacagagactgcctgcttctgcttct
gtagccttgggattactgtcactacaccccgactttcctgttttttagac
aggaaaatgggctgtctatttggtgaagacaggcatcacagtacactgaa
tactgggtcaacgattcgggtgttgaataatgctttaggatacgccgcgg
gttcaatgtgtcaaagagtaggagttctggaggctctcaccgtatg
gaattccagggaggggcgtgtccttttaccttgattggttagctctatct
ttagggtctggctgattctatgattggttaagctctggagacttccaggg
ggttgcttactcattctagctacctcttcttacttcaggccagatgacaa
ggtgtcctcggatgggctgcccgcagctgtgattggctgaccatgtattc
ctggatcctggttctcatttctgggaaacagaaacttaggcctagtctcc
caaactgcctgtttgctgcctgtcatggagtcagcctggctcagggtaac
tcagtcctctgagttctatgttctgtatcattggtacatatggagcttat
tttcttttgctccccctcctcctcctgctcctcctcctctcacccctcct
cctccttctctcatcccacctgcagtttcttcttcctcctctcctccagt
ttctcccccacccccattcactcctcagtttcccgtcagaaactttagtc
gggcctccctgggatatcaaccaaacatggcatatcaagttgctcccctc
acactgaggctggatgaggcaaccgagtgggagggaaagggcccccaaag
caggcaaagaatgagaaacaggtcccactcctcctgttaggagtcccaca
agaagaccaagctacacaaccataacatgtatgcaaagggcccaggtcag
acccacgcaggccccctgactgtcagttcagtctctggggagtccatatg
agcccaggtgaattggttctgtgggttcctgtggtggtcttgacccctgt
ggctcctacaatcctttctgccgtcttctgcaggcttcccaggtcacagg
ttcttgcttttagccagaacagtggcggtgtctcacgagcggcacagcat
ctgctccttctcattgctgtatacattccatcgcatgggtacgtgtatat
aatattgcattgccatccatcgcatgggacatgtgtatataaatattatg
taataagggggttggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53748975_53749996
seq2: B6Ng01-029A12.g_67_1083

seq1  GAATTCCAGGGAGGGGCGTGTCCTTTTACCTTGATTGGTTAGCTCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGGGGCGTGTCCTTTTACCTTGATTGGTTAGCTCTATCT  50

seq1  TTAGGGTCTGGCTGATTCTATGATTGGTTAAGCTCTGGAGACTTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCTGGCTGATTCTATGATTGGTTAAGCTCTGGAGACTTCCAGGG  100

seq1  GGTTGCTTACTCATTCTAGCTACCTCTTCTTACTTCAGGCCAGATGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTACTCATTCTAGCTACCTCTTCTTACTTCAGGCCAGATGACAA  150

seq1  GGTGTCCTCGGATGGGCTGCCCGCAGCTGTGATTGGCTGACCATGTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTCGGATGGGCTGCCCGCAGCTGTGATTGGCTGACCATGTATTC  200

seq1  CTGGATCCTGGTTCTCATTTCTGGGAAACAGAAACTTAGGCCTAGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCTGGTTCTCATTTCTGGGAAACAGAAACTTAGGCCTAGTCTCC  250

seq1  CAAACTGCCTGTTTGCTGCCTGTCATGGAGTCAGCCTGGCTCAGGGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCCTGTTTGCTGCCTGTCATGGAGTCAGCCTGGCTCAGGGTAAC  300

seq1  TCAGTCCTCTGAGTTCTATGTTCTGTATCATTGGTACATATGGAGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTCTGAGTTCTATGTTCTGTATCATTGGTACATATGGAGCTTAT  350

seq1  TTTCTTTTGCTCCCCCTCCTCCTCCTGCTCCTCCTCCTCTCACCCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCTCCCCCTCCTCCTCCTGCTCCTCCTCCTCTCACCCCTCCT  400

seq1  CCTCCTTCTCTCATCCCACCTGCAGTTTCTTCTTCCTCCTCTCCTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCTCATCCCACCTGCAGTTTCTTCTTCCTCCTCTCCTCCAGT  450

seq1  TTCTCCCCCACCCCCATTCACTCCTCAGTTTCCCGTCAGAAACTTTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCCACCCCCATTCACTCCTCAGTTTCCCGTCAGAAACTTTAGTC  500

seq1  GGGCCTCCCTGGGATATCAACCAAACATGGCATATCAAGTTGCTCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCCTGGGATATCAACCAAACATGGCATATCAAGTTGCTCCCCTC  550

seq1  ACACTGAGGCTGGATGAGGCAACCGAGTGGGAGGGAAAGGGCCCCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGGCTGGATGAGGCAACCGAGTGGGAGGGAAAGGGCCCCCAAAG  600

seq1  CAGGCAAAGAATGAGAAACAGGTCCCACTCCTCCTGTTAGGAGTCCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGAATGAGAAACAGGTCCCACTCCTCCTGTTAGGAGTCCCACA  650

seq1  AGAAGACCAAGCTACACAACCATAACATGTATGCAAAGGGCCCAGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCAAGCTACACAACCATAACATGTATGCAAAGGGCCCAGGTCAG  700

seq1  ACCCACGCAGGCCCCCTGACTGTCAGTTCAGTCTCT-GGGAGTCCATATG  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCCACGCAGGCCCCCTGACTGTCAGTTCAGTCTCTGGGGAGTCCATATG  750

seq1  AGCCCAGGTGAATTGGTTCTGTGGGTTCCTGTGGTGGCCTTGACCCCTGT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCCCAGGTGAATTGGTTCTGTGGGTTCCTGTGGTGGTCTTGACCCCTGT  800

seq1  GGCTCCTACAATCCTTTCTGCCGTCTTCTGCAGGCTTCCCAGGTCACA-G  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCTCCTACAATCCTTTCTGCCGTCTTCTGCAGGCTTCCCAGGTCACAGG  850

seq1  TTCTTGCTCTTAGCCAGAACAGTGGCGGTGTCTCACAGAGCGGCACAGCA  898
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTGCTTTTAGCCAGAACAGTGGCGGTGTCTCAC-GAGCGGCACAGCA  899

seq1  TCTGCTCCTTCTCATTGCTGTATAGCATTCCATCGCATGGGTACGTGTAT  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGCTCCTTCTCATTGCTGTATA-CATTCCATCGCATGGGTACGTGTAT  948

seq1  ATTAATATTGCATTGCATTCCATCGCATGGGTACATGTGTATATTAATAT  998
      | ||||||||||||||  ||||||||||||| |||||||||||| |||| 
seq2  A-TAATATTGCATTGCCATCCATCGCATGGG-ACATGTGTATATAAATA-  995

seq1  TTATGTATATAATGGGGGTTGGTC  1022
      ||||||| |||| |||||||||||
seq2  TTATGTA-ATAA-GGGGGTTGGTC  1017