BAC Information

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BAC

Clone NameB6Ng01-029C03
Chromosome6 (Build37)
Map Location 82,165,752 - 82,166,082
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166
Downstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C03.bB6Ng01-029C03.g
ACCDH859419DH859420
length1,251350
definitionDH859419|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C03, 5' end.DH859420|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccaagctccatccactgtttggctgtgggtgtctatatctgtct
gagccagctgctagttggagcctctaagaggatagacacactagagtcct
gtaagcataacagagtatcattaatagtgttagggattagtgctttccca
tgggatgggtctcaagttgggatggtgattggttgaccattccctcagtc
tctgctctctcccccatgcttgtattacttgtagactggatacattttag
gttgaaaattttgtgggtgggttgctccactggggtttctgtctggataa
aggaggttgccatatccccaatgtagtgagtcacagctaaggtcaccctc
attgattcttgggtgcctcaattgtcccaggccatgtctcatcctggaga
tgcccataacctcttaatccctgtcagttgcagatttccattaattttca
tggtcatttagccatctctcctgttcttccccacacctgaatcctccatt
cctctccccatccccatccctcccagttccctctcttcatctgcctctat
gactattttattcccctttctaagtgagattcacgcttccttgcttgggc
cttccttcttgtttacatcccttctttgggtctatggagtgtaacatggt
acctgtattttgtagctaacatccacttatatgtgagtatataccattgc
atgtccttttgagtctgggttaccttactcaggatgatattctcaagttc
catccatttgcctgtaaatttaatgatgtcttggcttttaaaaactgaat
agtattccattgtgtagatgcactacattttctctatccattcttcagtt
gagggacattaagttatttctagtttctggctattatgaataaagctgct
atgacatagttgagcaagtatctttgtgagatagtggaacatcttttggg
tatatgcccaggagtcttatagctgggtattgaggtagagctattccaag
ttttctgagaaaactccaaatgatttctaagttgttgtacaagattgtag
tccaccgggatgggcggagtgtttccctgtctccatccttccagccatgt
ctattctctgagtctttgagttcaaacatgataaggacatgcaggtggac
tgcaattattttatctaggactcctagtcctgcatgaatcctcgtcggaa
tgcataatcctgagcgcacttctacttagtatcgagatttggggtcatat
c
cagatctttccaagacttttgctatgaaggggtgttgaattttgtcaaat
acttgctcaacatctaaagaaatgatcatattttttttcctttgagtttg
tttatatagtgtattatggtaatagatttccatatactgaaacatccctt
catccctttactgagtatttttgcatcaatattcataagtgaaattagtc
taaagttctctttgtagggtctttgtgtggtttagttatgagtgtaattg
tggtttcatagaacaaatttggtactattacttctgtttcagttttgtgg
aacagtttgaagattattcgtattaggtcttctttgaaggtctgatagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82165752_82166082
seq2: B6Ng01-029C03.g_164_421 (reverse)

seq1  TTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTT  50
      ||||||||||||||||||||||| ||||| | | |  |   |||||| ||
seq2  TTCTATCAGACCTTCAAAGAAGACCTAATACGAATAATCTTCAAACTGTT  50

seq1  TCACAAGATAGAAGTCGAAAGTACT-CTACCCAACTCATTTTATGAAGCC  99
       ||||| |  |||  |  ||||| |  |||| || |  || |||||| ||
seq2  CCACAAAACTGAA-ACAGAAGTAATAGTACCAAATTTGTTCTATGAAACC  99

seq1  ACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAA  149
      || ||||| || ||| |||||||||| ||||| || ||||    ||||||
seq2  ACAATTACACTCATAACTAAACCACACAAAGACCCTACAA----AGAGAA  145

seq1  CTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAA  199
      ||| |||| |||||| ||||||||||| ||||||||||| |||| |||  
seq2  CTTTAGACTAATTTCACTTATGAATATTGATGCAAAAATACTCAGTAA--  193

seq1  TTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGAC  249
                                                        
seq2  --------------------------------------------------  193

seq1  CAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATC  299
                       ||||||| ||||||| || | |||| | |||||
seq2  -----------------AGGGATGAAGGGATGTTTCAGTATATGGAAATC  226

seq1  CATCAATGTAATCCACTATATAAACAAACTCA  331
       || |   |||| |||||||||||||||||||
seq2  TATTACCATAATACACTATATAAACAAACTCA  258