BAC Information

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BAC

Clone NameB6Ng01-029F18
Chromosome6 (Build37)11 (Build37)
Map Location 18,835,442 - 18,835,96892,217,227 - 92,218,340
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029F18.bB6Ng01-029F18.g
ACCDH859580DH859581
length9741,086
definitionDH859580|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F18, 5' end.DH859581|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(92,217,227 - 92,218,340)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtctaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaaattccttga
tccatttagatttgaccttagtacaagcagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttgtcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggatcgcattgaatctgtagattgcttttggcaagatagccattt
ttacattttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagttttatcataca
gatctttcacttccttagtagagtcatgccgagatattttatattatttg
tgactattgagaaggtgtgtttcc
gaattctaataaaatcaatattaatttatgtccttggcttgctgcattta
aatttagaatagataacattcaaactaggagaaacaaacaataaaacaga
ataacagtggtactaaaacagtgatttacaattctgcaagcttaacgttg
caaacatttatagtacagtatgtgccttgattttagaaaacaatgggggg
ttttcaacaagcagaattagaccaaatccttgagtctgtagacattataa
taatgtaaaaattattatatcttatctatttattgtgtgtattcatatgc
cccagtgcacatgaagaagccagagggataatttgttggagttaattctc
tccttccatcatgtggttctggaatctttaaatgagttactggtacctac
gaagccatctctatgatctaatgtttttttttttttttctcctttctaag
ttattagttttgatatggactttaatctccacaaacagtggagtggagat
taaactgtttgtggagattaaaatctatatcaaaagaataggacatttat
tcttactaatttaacatttgtttactctcctgtttctgtttattattggg
ctttgcttgccccaaaccttctgtgtaatcctggctgacccagaactcac
aaaacattgctggaattacatatgtgcaccatggccaactttttcaaatg
tctgtggagatctcttaagatccaagaaagtcaaagaaaataaaatcagt
aactctgaggccaagttggttccatgtttgaaggggattggctgccaagt
ttaatcttctatactcacatagttgaaggagagaaccaactgccaaaggt
tgtcttctgccttctgaatgtatgttcacacacatgttcctccatgaagg
cacatgtgcactcacattatataacaacacataacaaataaacattttta
gaataaataaatctttgggatttattctgattatattttctctgagacaa
tcttgtctatacttctgactcctctctaagacgatctctgccattgttca
tgatgaatgatctggactccgaaactcagttaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-029F18.b_35_562 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
       | |||||||||||||||||||| |||||||||||| |||||||||||||
seq2  GCTTGTACTAAGGTCAAATCTAAATGGATCAAGGAATTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTAGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr11_92217227_92218340
seq2: B6Ng01-029F18.g_63_1148 (reverse)

seq1  GAATTATAAACTGAGTTTCTGGGAAGTCAGATTCATTTCATACCATGGAA  50
      |||||   |||||||||||  |||   |||| ||| |||||  ||| |||
seq2  GAATT---AACTGAGTTTC--GGAGTCCAGA-TCA-TTCAT--CAT-GAA  40

seq1  CAAATGGCAAGAGATCGTCTTTAGAGAGGAGTCAGAAGTAATAGACAAGG  100
      | |||||| |||||||||| ||||||||||||||||||| |||||||| |
seq2  C-AATGGC-AGAGATCGTC-TTAGAGAGGAGTCAGAAGT-ATAGACAA-G  85

seq1  ATTGTCCTCAGAGGAAAATATAATTCAGAAATAAAATCCCAAAGATTTTA  150
      ||||| |||||| |||||||||| ||||||   |||||||||||||||  
seq2  ATTGT-CTCAGA-GAAAATATAA-TCAGAA--TAAATCCCAAAGATTT--  128

seq1  ATTTATTTCTAAAAAATTGTTTATTTGTGTATGTGTTTGTTTATATAATG  200
      ||||| |||||||||  ||||||||||| ||||||||   ||||||||||
seq2  ATTTA-TTCTAAAAA--TGTTTATTTGT-TATGTGTT--GTTATATAATG  172

seq1  TGGGTGCACATGTGCCTTCATGGAGGAACATGTGTGTGAACATACATTCA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCACATGTGCCTTCATGGAGGAACATGTGTGTGAACATACATTCA  222

seq1  GAAGGCAGAAGACAACCTTTGGCAGTTGGTTCTCTCCTTCAACTATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAAGACAACCTTTGGCAGTTGGTTCTCTCCTTCAACTATGTGA  272

seq1  GTATAGAAGATTAAACTTGGCAGCCAATCCCCTTCAAACATGGAACCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAGATTAAACTTGGCAGCCAATCCCCTTCAAACATGGAACCAAC  322

seq1  TTGGCCTCAGAGTTACTGATTTTATTTTCTTTGACTTTCTTGGATCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAGAGTTACTGATTTTATTTTCTTTGACTTTCTTGGATCTTAA  372

seq1  GAGATCTCCACAGACATTTGAAAAAGTTGGCCATGGTGCACATATGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCCACAGACATTTGAAAAAGTTGGCCATGGTGCACATATGTAAT  422

seq1  TCCAGCAATGTTTTGTGAGTTCTGGGTCAGCCAGGATTACACAGAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAATGTTTTGTGAGTTCTGGGTCAGCCAGGATTACACAGAAGGTT  472

seq1  TGGGGCAAGCAAAGCCCAATAATAAACAGAAACAGGAGAGTAAACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAGCAAAGCCCAATAATAAACAGAAACAGGAGAGTAAACAAATG  522

seq1  TTAAATTAGTAAGAATAAATGTCCTATTCTTTTGATATAGATTTTAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGTAAGAATAAATGTCCTATTCTTTTGATATAGATTTTAATCT  572

seq1  CCACAAACAGTTTAATCTCCACTCCACTGTTTGTGGAGATTAAAGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACAGTTTAATCTCCACTCCACTGTTTGTGGAGATTAAAGTCCAT  622

seq1  ATCAAAACTAATAACTTAGAAAGGAGAAAAAAAAAAAAAAACATTAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACTAATAACTTAGAAAGGAGAAAAAAAAAAAAAAACATTAGATC  672

seq1  ATAGAGATGGCTTCGTAGGTACCAGTAACTCATTTAAAGATTCCAGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATGGCTTCGTAGGTACCAGTAACTCATTTAAAGATTCCAGAACC  722

seq1  ACATGATGGAAGGAGAGAATTAACTCCAACAAATTATCCCTCTGGCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGAAGGAGAGAATTAACTCCAACAAATTATCCCTCTGGCTTCT  772

seq1  TCATGTGCACTGGGGCATATGAATACACACAATAAATAGATAAGATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCACTGGGGCATATGAATACACACAATAAATAGATAAGATATAA  822

seq1  TAATTTTTACATTATTATAATGTCTACAGACTCAAGGATTTGGTCTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTACATTATTATAATGTCTACAGACTCAAGGATTTGGTCTAATT  872

seq1  CTGCTTGTTGAAAACCCCCCATTGTTTTCTAAAATCAAGGCACATACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTTGAAAACCCCCCATTGTTTTCTAAAATCAAGGCACATACTGT  922

seq1  ACTATAAATGTTTGCAACGTTAAGCTTGCAGAATTGTAAATCACTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATGTTTGCAACGTTAAGCTTGCAGAATTGTAAATCACTGTTTT  972

seq1  AGTACCACTGTTATTCTGTTTTATTGTTTGTTTCTCCTAGTTTGAATGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACTGTTATTCTGTTTTATTGTTTGTTTCTCCTAGTTTGAATGTT  1022

seq1  ATCTATTCTAAATTTAAATGCAGCAAGCCAAGGACATAAATTAATATTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCTAAATTTAAATGCAGCAAGCCAAGGACATAAATTAATATTGA  1072

seq1  TTTTATTAGAATTC  1114
      ||||||||||||||
seq2  TTTTATTAGAATTC  1086