BAC Information

Click to search

BAC

Clone NameB6Ng01-029J04
Chromosome6 (Build37)15 (Build37)
Map Location 18,835,455 - 18,835,96852,664,756 - 52,665,931
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029J04.bB6Ng01-029J04.g
ACCDH859738DH859739
length9551,144
definitionDH859738|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J04, 5' end.DH859739|Mus musculus domesticus DNA, BAC clone: B6Ng01-029J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,455 - 18,835,968)(52,664,756 - 52,665,931)
sequence
gaattctttgttcagttctgagccccatttttaaatggggttatttgatt
ttatggagtccaccttcttgagttctttatatatgttgtatattagtccc
ctatccaatttgggataggtaaagatcctttcccaacctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttta
tgaggtcccatttatctattctcgatcttacagcacaagccattgctgtt
ctattaaggaatttttcccctgtacccatatcttctaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
aatcttctacagccactatctactgataacagccagttgtgccagcacca
tttgttgaaaatgctgtctttttttccactggatagttttagctcccttg
tcaaagatcaagtgaccataggtgtgtgggttcatctctgggtcttcagt
tctgttccattggtctacttgtctgtcactataccagtaccatgcagttt
tgatcacaattgctctgtagtacagctttaggtcaggcatggtgattcca
tcagaggttcttttatccttgagaagagtttttgctatcctaggtttttt
gttattccagatgaatctgccgattgccctttctaattcggtgaagaatt
gagttggaattttgatggggattgcattgaatctgtagattgcttttggt
aagatagccatttttactatatggatcctgccaatccatgagcatgggag
atctttccatcttctgagatcttctttaatttctttcttcagagacatga
aattctatcatacagatctttcacttccttagttaaagtcacgccaagat
atttt
gaattcatgcctagtgttgtaaacttggtcaagagctcatagcagggaag
atcataggcatagggttagggagggacacaacaccaccattttgccaaat
taccacatagcaaatctttctttaaaatatttataattatactcattgat
tgttgctgcatctgaccttaatcagagcatgtgcttatttttgtgaatgg
cagttaatttggataccatgattagccaaagtgctgacagtaagtgatgt
tgaaggtcttggcacaaacgggacagcttgtccctcaaaacctcaagaaa
tatcaccgagaaagagagcgaaactatgtaagaactagaagatggagagc
tatcttttgcccatgacatccactgaagtcaggaactcactcaagtttga
accaatcagtgattcatcctggctgaaggagggtctcctgaggctccacc
cctccctaaagaactcttgccaaccaatagaatgtctcagtttgtttagt
agtgcagccaccaataaaaacttccctcccactctcaggcaagaaactaa
ttaaacacaatgatcacacagaagacatgagggcaggacggggatttgtt
aagaaaaaacattctaatgtaagagaacggaagatgaaagaagagggcga
gggtgaagatgactaaaattcatcacacagatgtaggaaactgtcaaact
aaaattattaaagaaaaatacttttcactaacatcttatgaaagaataga
gactggagagatgttcaataggtaaagtgcttgctatagaagcatgaaga
tctgagttcaatccccagaacacatgtaaaaaagccaggcaagggtttgg
gcatagcatgttatcccagcagtgggcagcagagacataagatctctagc
gggtattcacgccaaatacacaagctcatatttagtaagtgtctctgtct
caatatatcgtaaagagacatttcacatcagctgctcacttgatgtcata
tgcacacagcttatgtcacttgccatgtacacatacacaacacatgagaa
gaacattatgctgtctaatgtcaaccttcactaagcacctgtctctcact
tgcactgtttacagagtccttcattgttccctccatttccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835455_18835968
seq2: B6Ng01-029J04.b_40_567 (reverse)

seq1  CACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAG  50
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  CACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACTATCCAG  50

seq1  TGG-AAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGT  99
      ||| || |||||||||||||||||||| |||||||||||||||||| |||
seq2  TGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCTGT  100

seq1  TATC------------TTGTAGAAGAATGTGAATCGATCCATACTTATCT  137
      ||||             ||||||||| || |||| |||||||   |||||
seq2  TATCAGTAGATAGTGGCTGTAGAAGATTGCGAATTGATCCATTTCTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  187
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  237
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTAGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  286
      |||| | ||||||||| ||||| || |||||||||||||| |||||||| 
seq2  TGGGTACAGGGGAAAAATTCCTTAATAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  336
      || | |||||| || ||||||||||| || ||||| ||||| ||||||||
seq2  AGATCGAGAATAGATAAATGGGACCTCATAAAACTGCAAAGCTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  386
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGGTTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  436
      |||||||||||||||| ||||  |||||||||||||||| ||||||||||
seq2  GGATCTTTACCTATCCCAAATTGGATAGGGGACTAATATACAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  486
      |||||||||||||||||||||| || ||||||||||||||||||| | ||
seq2  AAAGAACTCAAGAAGGTGGACTCCATAAAATCAAATAACCCCATTTAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  514
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr15_52664756_52665931
seq2: B6Ng01-029J04.g_67_1210 (reverse)

seq1  AGATGGAGAATATGGAGGGGGGACAAATGAAGGACTCTGT-AACAGCTGC  49
      ||||||| |||     || ||||  ||||||||||||||| ||||| || 
seq2  AGATGGA-AAT-----GGAGGGAACAATGAAGGACTCTGTAAACAG-TG-  42

seq1  CAGGTGAGAGAACCAGGGTGCTTAGTGGAAGTTGTGACAAATAAGGACAG  99
      || ||||||||  || ||||||||||| | ||||    | || | |||| 
seq2  CAAGTGAGAGA--CA-GGTGCTTAGTGAAGGTTG----ACATTA-GACA-  83

seq1  GCATAAATGTTC-TCTCATTTGTGTTTGGTGTATGTGTACATGTGCAAGT  148
      |||| ||||||| |||||  ||||||  ||||||||||||||| ||||||
seq2  GCAT-AATGTTCTTCTCA--TGTGTT--GTGTATGTGTACATG-GCAAGT  127

seq1  GAACATAAGCTTGTGTGCATATGAACATCAAGGTGAGCAGCTGATGTGAA  198
      | |||||||| |||||||||||| ||||||| ||||||||||||||||||
seq2  G-ACATAAGC-TGTGTGCATATG-ACATCAA-GTGAGCAGCTGATGTGAA  173

seq1  ATGTCTTCTTTACGATAATTATTTGAGACAAGAGACACTTACTAAATATT  248
      ||||| |||||||||||  || ||||||| |||||||||||||||||| |
seq2  ATGTC-TCTTTACGATA--TA-TTGAGAC-AGAGACACTTACTAAATA-T  217

seq1  GAGCTTGTGTATTTGGCGTGAATACCCGCTAGAGATCCTTATGTCTCTGC  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCTTGTGTATTTGGCGTGAATACCCGCTAGAGAT-CTTATGTCTCTGC  266

seq1  TGCCCACTGCTGGGATAACATGCTATGCCCAAACCCTTGCCTGGCTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTGCTGGGATAACATGCTATGCCCAAACCCTTGCCTGGCTTTTT  316

seq1  TACATGTGTTCTGGGGATTGAACTCAGATCTTCATGCTTCTATAGCAAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTTCTGGGGATTGAACTCAGATCTTCATGCTTCTATAGCAAGC  366

seq1  ACTTTACCTATTGAACATCTCTCCAGTCTCTATTCTTTCATAAGATGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTATTGAACATCTCTCCAGTCTCTATTCTTTCATAAGATGTTA  416

seq1  GTGAAAAGTATTTTTCTTTAATAATTTTAGTTTGACAGTTTCCTACATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGTATTTTTCTTTAATAATTTTAGTTTGACAGTTTCCTACATCT  466

seq1  GTGTGATGAATTTTAGTCATCTTCACCCTCGCCCTCTTCTTTCATCTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGAATTTTAGTCATCTTCACCCTCGCCCTCTTCTTTCATCTTCC  516

seq1  GTTCTCTTACATTAGAATGTTTTTTCTTAACAAATCCCCGTCCTGCCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTACATTAGAATGTTTTTTCTTAACAAATCCCCGTCCTGCCCTC  566

seq1  ATGTCTTCTGTGTGATCATTGTGTTTAATTAGTTTCTTGCCTGAGAGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCTGTGTGATCATTGTGTTTAATTAGTTTCTTGCCTGAGAGTGG  616

seq1  GAGGGAAGTTTTTATTGGTGGCTGCACTACTAAACAAACTGAGACATTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGTTTTTATTGGTGGCTGCACTACTAAACAAACTGAGACATTCT  666

seq1  ATTGGTTGGCAAGAGTTCTTTAGGGAGGGGTGGAGCCTCAGGAGACCCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGGCAAGAGTTCTTTAGGGAGGGGTGGAGCCTCAGGAGACCCTC  716

seq1  CTTCAGCCAGGATGAATCACTGATTGGTTCAAACTTGAGTGAGTTCCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCAGGATGAATCACTGATTGGTTCAAACTTGAGTGAGTTCCTGA  766

seq1  CTTCAGTGGATGTCATGGGCAAAAGATAGCTCTCCATCTTCTAGTTCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGGATGTCATGGGCAAAAGATAGCTCTCCATCTTCTAGTTCTTA  816

seq1  CATAGTTTCGCTCTCTTTCTCGGTGATATTTCTTGAGGTTTTGAGGGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTCGCTCTCTTTCTCGGTGATATTTCTTGAGGTTTTGAGGGACA  866

seq1  AGCTGTCCCGTTTGTGCCAAGACCTTCAACATCACTTACTGTCAGCACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCCGTTTGTGCCAAGACCTTCAACATCACTTACTGTCAGCACTT  916

seq1  TGGCTAATCATGGTATCCAAATTAACTGCCATTCACAAAAATAAGCACAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATCATGGTATCCAAATTAACTGCCATTCACAAAAATAAGCACAT  966

seq1  GCTCTGATTAAGGTCAGATGCAGCAACAATCAATGAGTATAATTATAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATTAAGGTCAGATGCAGCAACAATCAATGAGTATAATTATAAAT  1016

seq1  ATTTTAAAGAAAGATTTGCTATGTGGTAATTTGGCAAAATGGTGGTGTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGAAAGATTTGCTATGTGGTAATTTGGCAAAATGGTGGTGTTG  1066

seq1  TGTCCCTCCCTAACCCTATGCCTATGATCTTCCCTGCTATGAGCTCTTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCCCTAACCCTATGCCTATGATCTTCCCTGCTATGAGCTCTTGA  1116

seq1  CCAAGTTTACAACACTAGGCATGAATTC  1176
      ||||||||||||||||||||||||||||
seq2  CCAAGTTTACAACACTAGGCATGAATTC  1144