BAC Information

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BAC

Clone NameB6Ng01-029M02
Chromosome6 (Build37)
Map Location 75,163,472 - 75,254,684
singlet/doubletdoublet
Overlap geneLOC621306
Upstream geneEG668132, LOC668136
Downstream geneLOC100042942, LOC668143, EG668145, EG546907, LOC100042952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M02.bB6Ng01-029M02.g
ACCDH859864DH859865
length1,158516
definitionDH859864|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M02, 5' end.DH859865|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,163,472 - 75,164,635)(75,254,163 - 75,254,684)
sequence
gaattcttattgagagttttgttcacagttttctgtaggctttgattttt
caaatcctactttatttagggttctgaaatgcttcaacctcccttctaac
tcaccaaccagagttagagaaaaaaaggttgacaggaaaagggtgttgtg
aacctttttaggagtaacttcctttgggtgattccatcattcgttgccag
gataccagtaatcgagttcaatgccaaatactaaacagacatcagtagta
gtgttccagcaaaacctgcaaggctccacaaaatcgtatgagtgaataga
agctgccagaatcagctggaataacactagaagttctttggtgtgtttct
ctctacaaactgcagagcaaagaagaccatctaagaccagcaaagaccaa
tgaagaccagcaaagtgttggcccagcctagcaatgcaagagaatgcttt
ctctctttgtgggattccatttatatactctttctaaacatcacacaccc
tcttcagtgtctgttttcagcaaaacatcacatgacctctcagaagacag
ctttaagaaaaatatcacgtgacacaactgagttgttaacaaatgagaaa
tttccacttcagatttcacaaataacaacagaaaacttttgcttggtgca
tattttgcattggattttgaggttttaattctgagaaaaatataaagccc
gaagaaaaaccattgtcaactgataaagaatgaactcaaagaatctgttt
cctagtatggaaagcttattagtactaacatggtacctgttttgaattaa
ttcagcaatttagttttcacttatctttatttccaaccaatttatataca
ttttcatattaagtaattaattttcaattttaaatgtttgacagtttcat
acatttatatcacaaattgcattaattagcatatcaaattcccttctctc
cctcttctctctctgatgctatccttctttcgatagtctctgcctcctcg
tacaactttttttgtggagcacacaaagtttatgaatgcttctttctgaa
cacaggcagtgttatttactgtaataagggttaagtgtcagtgaatgaag
aaaatgaacccttataaaccatgatcattcaatagactttctctggtttt
gatgtggg
tttattgtggttaatttacatgaacttgcttagagctaaaaattaaatga
ataaataacaatgtttactgaatgaaatggatttttctatctagaacaat
tacattcttttcacacactattttcaaatgaagaatataattgtaggaaa
caaattattatttgccaaattacacaggtagatatttacatagttttaca
taagagtatttatgtccttcatacacatcagtaatagaaataaacatttt
cccagaaaaatattatctcaaactgttatatgaaaagttacagtataaat
ataaaaataaatacataggtacatacatacacacacacattatgtttaca
acataatcaattaagacaaaatttaacttacagaaaataaagttagtttc
agatcacaggattttaaaggttgatgcttccttatttttctttgccatct
tcataagtcttagaacatctctgatgtttcttcttttttaaagttgttac
ttatttgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75163472_75164635
seq2: B6Ng01-029M02.b_41_1198

seq1  GAATTCTTATTGAGAGTTTTGTTCACAGTTTTCTGTAGGCTTTGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTGAGAGTTTTGTTCACAGTTTTCTGTAGGCTTTGATTTTT  50

seq1  CAAATCCTACTTTATTTAGGGTTCTGAAATGCTTCAACCTCCCTTCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTACTTTATTTAGGGTTCTGAAATGCTTCAACCTCCCTTCTAAC  100

seq1  TCACCAACCAGAGTTAGAGAAAAAAAGGTTGACAGGAAAAGGGTGTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACCAGAGTTAGAGAAAAAAAGGTTGACAGGAAAAGGGTGTTGTG  150

seq1  AACCTTTTTAGGAGTAACTTCCTTTGGGTGATTCCATCATTCGTTGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTAGGAGTAACTTCCTTTGGGTGATTCCATCATTCGTTGCCAG  200

seq1  GATACCAGTAATCGAGTTCAATGCCAAATACTAAACAGACATCAGTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGTAATCGAGTTCAATGCCAAATACTAAACAGACATCAGTAGTA  250

seq1  GTGTTCCAGCAAAACCTGCAAGGCTCCACAAAATCGTATGAGTGAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAGCAAAACCTGCAAGGCTCCACAAAATCGTATGAGTGAATAGA  300

seq1  AGCTGCCAGAATCAGCTGGAATAACACTAGAAGTTCTTTGGTGTGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAGAATCAGCTGGAATAACACTAGAAGTTCTTTGGTGTGTTTCT  350

seq1  CTCTACAAACTGCAGAGCAAAGAAGACCATCTAAGACCAGCAAAGACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAAACTGCAGAGCAAAGAAGACCATCTAAGACCAGCAAAGACCAA  400

seq1  TGAAGACCAGCAAAGTGTTGGCCCAGCCTAGCAATGCAAGAGAATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCAGCAAAGTGTTGGCCCAGCCTAGCAATGCAAGAGAATGCTTT  450

seq1  CTCTCTTTGTGGGATTCCATTTATATACTCTTTCTAAACATCACACACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTGTGGGATTCCATTTATATACTCTTTCTAAACATCACACACCC  500

seq1  TCTTCAGTGTCTGTTTTCAGCAAAACATCACATGACCTCTCAGAAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTGTCTGTTTTCAGCAAAACATCACATGACCTCTCAGAAGACAG  550

seq1  CTTTAAGAAAAATATCACGTGACACAACTGAGTTGTTAACAAATGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAAAAATATCACGTGACACAACTGAGTTGTTAACAAATGAGAAA  600

seq1  TTTCCACTTCAGATTTCACAAATAACAACAGAAAACTTTTGCTTGGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTTCAGATTTCACAAATAACAACAGAAAACTTTTGCTTGGTGCA  650

seq1  TATTTTGCATTGGATTTTGAGGTTTTAATTCTGAGAAAAATATAAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCATTGGATTTTGAGGTTTTAATTCTGAGAAAAATATAAAGCCC  700

seq1  GAAGAAAAACCATTGTCAACTGATAAAGAATGAACTCAAAGAATCTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAACCATTGTCAACTGATAAAGAATGAACTCAAAGAATCTGTTT  750

seq1  CCTAGTATGGAAAGCTTATTAGTACTAACATGGTACCTGTTTTGAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATGGAAAGCTTATTAGTACTAACATGGTACCTGTTTTGAATTAA  800

seq1  TTCAGCAATTTAGTTTTCACTTATCTTTATTTCCAACCAATTTATATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAATTTAGTTTTCACTTATCTTTATTTCCAACCAATTTATATACA  850

seq1  TTTTCATATTAAGTAATTAATTTTCAATTTTAAATGTTTGACAGTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTAAGTAATTAATTTTCAATTTTAAATGTTTGACAGTTTCAT  900

seq1  ACATTTATATCACAAATTGCATTAATTAGCATATCAAATTCCCTTCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATATCACAAATTGCATTAATTAGCATATCAAATTCCCTTCTCTC  950

seq1  CCTCTTCTCTCTCCTGATGCTATCCTTCTTTTCGATAGTTCTCTGCCTCC  1000
      |||||||||||| ||||||||||||||| ||||||||| |||||||||||
seq2  CCTCTTCTCTCT-CTGATGCTATCCTTC-TTTCGATAG-TCTCTGCCTCC  997

seq1  TCGTACAACTTTTTTTGTGGAGCACACAAAGTTTTATGAATGCTTCTTTC  1050
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TCGTACAACTTTTTTTGTGGAGCACACAAAG-TTTATGAATGCTTCTTT-  1045

seq1  CTGAACACAGGCCAAGTGTTATTTACTGTAATAAGGGTAAAGTGTCAGTG  1100
      ||||||||||||  |||||||||||||||||||||||| |||||||||||
seq2  CTGAACACAGGC--AGTGTTATTTACTGTAATAAGGGTTAAGTGTCAGTG  1093

seq1  AATGAAGAAAATGACACCCTATACACCATGAATCATTCAATAGACTTTCT  1150
      ||||||||||||||  || |||| |||||| |||||||||||||||||||
seq2  AATGAAGAAAATGAACCCTTATAAACCATG-ATCATTCAATAGACTTTCT  1142

seq1  CTG--TTTGATGTGGG  1164
      |||  |||||||||||
seq2  CTGGTTTTGATGTGGG  1158

seq1: chr6_75254163_75254684
seq2: B6Ng01-029M02.g_67_588 (reverse)

seq1  ACACACACACAAATAAGTAACAACTTTAAAAAAGAAGAAACATCAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAATAAGTAACAACTTTAAAAAAGAAGAAACATCAGAGAT  50

seq1  GTTCTAAGACTTATGAAGATGGCAAAGAAAAATAAGGAAGCATCAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGACTTATGAAGATGGCAAAGAAAAATAAGGAAGCATCAACCTT  100

seq1  TAAAATCCTGTGATCTGAAACTAACTTTATTTTCTGTAAGTTAAATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTGTGATCTGAAACTAACTTTATTTTCTGTAAGTTAAATTTTG  150

seq1  TCTTAATTGATTATGTTGTAAACATAATGTGTGTGTGTATGTATGTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGATTATGTTGTAAACATAATGTGTGTGTGTATGTATGTACCT  200

seq1  ATGTATTTATTTTTATATTTATACTGTAACTTTTCATATAACAGTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTATTTTTATATTTATACTGTAACTTTTCATATAACAGTTTGAG  250

seq1  ATAATATTTTTCTGGGAAAATGTTTATTTCTATTACTGATGTGTATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTTTCTGGGAAAATGTTTATTTCTATTACTGATGTGTATGAAG  300

seq1  GACATAAATACTCTTATGTAAAACTATGTAAATATCTACCTGTGTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAATACTCTTATGTAAAACTATGTAAATATCTACCTGTGTAATTT  350

seq1  GGCAAATAATAATTTGTTTCCTACAATTATATTCTTCATTTGAAAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATAATAATTTGTTTCCTACAATTATATTCTTCATTTGAAAATAGT  400

seq1  GTGTGAAAAGAATGTAATTGTTCTAGATAGAAAAATCCATTTCATTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAGAATGTAATTGTTCTAGATAGAAAAATCCATTTCATTCAGT  450

seq1  AAACATTGTTATTTATTCATTTAATTTTTAGCTCTAAGCAAGTTCATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGTTATTTATTCATTTAATTTTTAGCTCTAAGCAAGTTCATGTA  500

seq1  AATTAACCACAATAAAGAATTC  522
      ||||||||||||||||||||||
seq2  AATTAACCACAATAAAGAATTC  522