BAC Information

Click to search

BAC

Clone NameB6Ng01-029N18
Chromosome6 (Build37)
Map Location 77,355,566 - 77,511,019
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029N18.bB6Ng01-029N18.g
ACCDH859935DH859936
length1,1521,101
definitionDH859935|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N18, 5' end.DH859936|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,355,566 - 77,356,742)(77,509,909 - 77,511,019)
sequence
gaattcttaaatgtgtttggctgcttcatccaatccattgtttgtcctct
gcacgctcccatatgaatgcgcaattgtaagagaaacagcaccccttctt
gagagtttacactctgatctaatcaagcattgataggaaatggtaaaatg
tgtggaaggtgtcacagtgatacataaggacattggaaggatagagaaag
aaggaagtaggaaataagaactagagaagaaaaagccctaagggataaag
ttagggatggaggaatataaagaaggacaaataattgagtgaagggaaag
gagggaaggaaaggacaacagaatgggaaactcaccaataggacacttct
ttacttttgatttaatctcaggtatgaaaaggatcatgaaggtgaagtgg
gaatcaacaaaaaacagtgacttaatatttccatccatataaatatttac
ccaaccagacgtccatcaaatattgaactcatattgttggctaaaaacca
tggcttagatctgagattcaatttgaacgtggcactctttgtgatatatt
gtttcatgttgtttctcaaaaaaaaaaaataaaaaataaaagaataataa
taaaaaaagaaaacaatctagaagaagcacccaagtgcagagagcaaaac
cacagagacagccagactcttcacagatgaaagtcctccattttcgcaca
tgagatctctttatcagacaagggttgtggtggcttgaatgaaaaccacc
agaagctctgtatttgaacatttgattcaaagtggtggccctctttgaaa
aggtttagaagatttggatttattcaaggagataagttactgaacatggg
cgttaagagtttagaacatcgtgctacttcctgcttgccctcactttctg
tttcatgtttgctgttggaatgattcctatgctatgcctgtctgctactg
tgacctcctgccaggatggattatattcctctggtgccgtagtaaaataa
aattgtcctttataggttgtctttgtcatagtgtcttttcgagcagcaac
gaagcatctataagggctgatatgcaggtgattacttagagaattaagga
ccagcttctttctatttttgtggatttgctttagagcatgcagatggaca
tg
gaattcctcaggggtctgcctatattttcagcccatgacaccctgctaca
taacatctttgcttgtccttttccacaatccaccaatatggcaagcatca
atttgttaaattatcatttttaaatgaagcttattcttagataaaaattt
tccttccccaatctacaacttaaggtattaggctagtaaaaaaaaataca
acaaacagaaaaatttaaagttataatctgaacaaaccttggtccataat
cctgaaatcccagcaatgatgaagttcagacaggagaaccaagaatttaa
agtcatctttagctgcgcaacacatgtgacgctagcctgagctaaatgaa
tcatgagaattttttccaaagtaataaataataggaatactgctcctaat
aatagaaataaatgctaacgtgtatctatcaagctggtcccagttccatg
ccttagcctgatcatctgcatgaggaggagacagaagtagagtcatagaa
gaattgttaaggagatgtgtcataggccactcttgtgccttctcttggga
tatggatgtgagactcctgagacacctggacctttgggagctgcagaaat
gcttttatttacaagtggcctttaacacttgttagatgttaagatgttaa
catgccttgttaacactataataaggttaaattctgattcttctgggctt
ttctgctttggacatgtttgggggtggggagtgtcctgtggcctcctctc
tgccatttatgcaagcagaactgtaggagttggccttttcattggatcat
attttgtctttgtggaggtctcagactttctgctaggcatttggatggac
taggacccatttcaaataatttttctcaattgctatgcattacttacttc
cgagttatatggtgagctgtaaagttctgtccctagtaagtaggtgagct
gctttcccaaccaggttcttattcattaaatttaggagaatattcaaatg
ggctaactgatgctaatcatgtttaaagccttctgagttagatgaccaat
cctcaagactggcaggctaagagagtttatgagcaaatagatttatcatt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77355566_77356742
seq2: B6Ng01-029N18.b_44_1195

seq1  GAATTCTTAAATGTGTTTGGCTGCTTCATCCAATCCATTGTTTGTCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGTGTTTGGCTGCTTCATCCAATCCATTGTTTGTCCTCT  50

seq1  GCACGCTCCCATATGAATGCGCAATTGTAAGAGAAACAGCACCCCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTCCCATATGAATGCGCAATTGTAAGAGAAACAGCACCCCTTCTT  100

seq1  GAGAGTTTACACTCTGATCTAATCAAGCATTGATAGGAAATGGTAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTACACTCTGATCTAATCAAGCATTGATAGGAAATGGTAAAATG  150

seq1  TGTGGAAGGTGTCACAGTGATACATAAGGACATTGGAAGGATAGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGGTGTCACAGTGATACATAAGGACATTGGAAGGATAGAGAAAG  200

seq1  AAGGAAGTAGGAAATAAGAACTAGAGAAGAAAAAGCCCTAAGGGATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTAGGAAATAAGAACTAGAGAAGAAAAAGCCCTAAGGGATAAAG  250

seq1  TTAGGGATGGAGGAATATAAAGAAGGACAAATAATTGAGTGAAGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGGAGGAATATAAAGAAGGACAAATAATTGAGTGAAGGGAAAG  300

seq1  GAGGGAAGGAAAGGACAACAGAATGGGAAACTCACCAATAGGACACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGGAAAGGACAACAGAATGGGAAACTCACCAATAGGACACTTCT  350

seq1  TTACTTTTGATTTAATCTCAGGTATGAAAAGGATCATGAAGGTGAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTGATTTAATCTCAGGTATGAAAAGGATCATGAAGGTGAAGTGG  400

seq1  GAATCAACAAAAAACAGTGACTTAATATTTCCATCCATATAAATATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACAAAAAACAGTGACTTAATATTTCCATCCATATAAATATTTAC  450

seq1  CCAACCAGACGTCCATCAAATATTGAACTCATATTGTTGGCTAAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGACGTCCATCAAATATTGAACTCATATTGTTGGCTAAAAACCA  500

seq1  TGGCTTAGATCTGAGATTCAATTTGAACGTGGCACTCTTTGTGATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGATCTGAGATTCAATTTGAACGTGGCACTCTTTGTGATATATT  550

seq1  GTTTCATGTTGTTTCTCAAAAAAAAAAAATAAAAAATAAAAGAATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTTGTTTCTCAAAAAAAAAAAATAAAAAATAAAAGAATAATAA  600

seq1  TAAAAAAAGAAAACAATCTAGAAGAAGCACCCAAGTGCAGAGAGCAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGAAAACAATCTAGAAGAAGCACCCAAGTGCAGAGAGCAAAAC  650

seq1  CACAGAGACAGCCAGACTCTTCACAGATGAAAGTCCTCCATTTTCGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACAGCCAGACTCTTCACAGATGAAAGTCCTCCATTTTCGCACA  700

seq1  TGAGATCTCTTTATCAGACAAGGGTTGTGGTGGCTTGAATGAAAACCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTCTTTATCAGACAAGGGTTGTGGTGGCTTGAATGAAAACCACC  750

seq1  AGAAGCTCTGTATTTGAACATTTGATTCAAAGTGGTGGCCCTCTTTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTGTATTTGAACATTTGATTCAAAGTGGTGGCCCTCTTTGAAA  800

seq1  AGGTTTAGAAGATTTGGATTTATTCAAGGAGATAAGTTACTGAACATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGAAGATTTGGATTTATTCAAGGAGATAAGTTACTGAACATGGG  850

seq1  CGTTAAGAGTTTAGAACATCGTGCTACTTCCTGCTTGCCCTCACTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAGAGTTTAGAACATCGTGCTACTTCCTGCTTGCCCTCACTTTCTG  900

seq1  TTTCATGTTTGCTGTTGGAATGATTCCTATGCTATGCCTGTCTGCTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTGCTGTTGGAATGATTCCTATGCTATGCCTGTCTGCTACTG  950

seq1  TGACCTCCTGCCAGGATGGATTTATATTCCTCTGGTGCCGTAAGTAAAAA  1000
      |||||||||||||||||||| |||||||||||||||||||| ||| ||||
seq2  TGACCTCCTGCCAGGATGGA-TTATATTCCTCTGGTGCCGT-AGT-AAAA  997

seq1  TAAAATTGTCCTTTTATAGGTTGTCTTTGTCATAGTGTCTTTTCAGAGCA  1050
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TAAAATTGTCC-TTTATAGGTTGTCTTTGTCATAGTGTCTTTTC-GAGCA  1045

seq1  GCAACAGAAAGCATCTAATACAGGGGCTGATTATGCAGGTGATTTACTTA  1100
      |||||   |||||||   || | ||||||| ||||||||||| |||||||
seq2  GCAAC--GAAGCATC---TATAAGGGCTGA-TATGCAGGTGA-TTACTTA  1088

seq1  GAGTATTTAAAGGACACAGCTCCTTTCTATTTTTGTTGAGTTTATGCTTT  1150
      ||| |||  |||||| ||||| |||||||||||||| ||   | ||||||
seq2  GAGAATT--AAGGAC-CAGCTTCTTTCTATTTTTGTGGA---TTTGCTTT  1132

seq1  AAGAAAGCAATGCAGAAATGGGACATG  1177
         | ||| |||||||    |||||||
seq2  ---AGAGC-ATGCAGA---TGGACATG  1152

seq1: chr6_77509909_77511019
seq2: B6Ng01-029N18.g_66_1165 (reverse)

seq1  AATGATAAATATCATTTTGCTCATAAACTTTCTCTAGCCTACCAGTCTCT  50
      ||||||||  |||  |||||||||||||| ||| |||||| ||||||| |
seq2  AATGATAA--ATCTATTTGCTCATAAACTCTCT-TAGCCTGCCAGTCT-T  46

seq1  GAGGATTGGTCATCTAAACTCAGAAGCTTTTAAACATGAATTAGCATCAG  100
      ||||||||||||||| ||||||||||  |||||||||| |||||||||||
seq2  GAGGATTGGTCATCT-AACTCAGAAGGCTTTAAACATG-ATTAGCATCAG  94

seq1  TTAGCCAATTTGAATATTCTGCCTTAAATTTAATTGAATAAGAACCTGGT  150
      |||||| |||||||||||||  | ||||||||| ||||||||||||||| 
seq2  TTAGCCCATTTGAATATTCT--CCTAAATTTAA-TGAATAAGAACCTGG-  140

seq1  TTGGGAAAGCAGCTCACCTACTTACTAGGGACAGAACTTTACAGCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGCAGCTCACCTACTTACTAGGGACAGAACTTTACAGCTCACC  190

seq1  ATATAACTCGGGAAGTAAGTAATGCATAGCAATTGAGAAAAATTATTTGA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTC-GGAAGTAAGTAATGCATAGCAATTGAGAAAAATTATTTGA  239

seq1  AATGGGTCCTAGTCCATCCAAATGCCTAGCAGAAAGTCTGAGACCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCCTAGTCCATCCAAATGCCTAGCAGAAAGTCTGAGACCTCCAC  289

seq1  AAAGACAAAATATGATCCAATGAAAAGGCCAACTCCTACAGTTCTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAATATGATCCAATGAAAAGGCCAACTCCTACAGTTCTGCTTG  339

seq1  CATAAATGGCAGAGAGGAGGCCACAGGACACTCCCCACCCCCAAACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGGCAGAGAGGAGGCCACAGGACACTCCCCACCCCCAAACATGT  389

seq1  CCAAAGCAGAAAAGCCCAGAAGAATCAGAATTTAACCTTATTATAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAGAAAAGCCCAGAAGAATCAGAATTTAACCTTATTATAGTGTT  439

seq1  AACAAGGCATGTTAACATCTTAACATCTAACAAGTGTTAAAGGCCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCATGTTAACATCTTAACATCTAACAAGTGTTAAAGGCCACTTG  489

seq1  TAAATAAAAGCATTTCTGCAGCTCCCAAAGGTCCAGGTGTCTCAGGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGCATTTCTGCAGCTCCCAAAGGTCCAGGTGTCTCAGGAGTC  539

seq1  TCACATCCATATCCCAAGAGAAGGCACAAGAGTGGCCTATGACACATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCATATCCCAAGAGAAGGCACAAGAGTGGCCTATGACACATCTC  589

seq1  CTTAACAATTCTTCTATGACTCTACTTCTGTCTCCTCCTCATGCAGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAATTCTTCTATGACTCTACTTCTGTCTCCTCCTCATGCAGATGA  639

seq1  TCAGGCTAAGGCATGGAACTGGGACCAGCTTGATAGATACACGTTAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTAAGGCATGGAACTGGGACCAGCTTGATAGATACACGTTAGCAT  689

seq1  TTATTTCTATTATTAGGAGCAGTATTCCTATTATTTATTACTTTGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTATTATTAGGAGCAGTATTCCTATTATTTATTACTTTGGAAAA  739

seq1  AATTCTCATGATTCATTTAGCTCAGGCTAGCGTCACATGTGTTGCGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATGATTCATTTAGCTCAGGCTAGCGTCACATGTGTTGCGCAGC  789

seq1  TAAAGATGACTTTAAATTCTTGGTTCTCCTGTCTGAACTTCATCATTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGACTTTAAATTCTTGGTTCTCCTGTCTGAACTTCATCATTGCT  839

seq1  GGGATTTCAGGATTATGGACCAAGGTTTGTTCAGATTATAACTTTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCAGGATTATGGACCAAGGTTTGTTCAGATTATAACTTTAAATT  889

seq1  TTTCTGTTTGTTGTATTTTTTTTTACTAGCCTAATACCTTAAGTTGTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTGTTGTATTTTTTTTTACTAGCCTAATACCTTAAGTTGTAGA  939

seq1  TTGGGGAAGGAAAATTTTTATCTAAGAATAAGCTTCATTTAAAAATGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGGAAAATTTTTATCTAAGAATAAGCTTCATTTAAAAATGATA  989

seq1  ATTTAACAAATTGATGCTTGCCATATTGGTGGATTGTGGAAAAGGACAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAAATTGATGCTTGCCATATTGGTGGATTGTGGAAAAGGACAAG  1039

seq1  CAAAGATGTTATGTAGCAGGGTGTCATGGGCTGAAAATATAGGCAGACCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTTATGTAGCAGGGTGTCATGGGCTGAAAATATAGGCAGACCC  1089

seq1  CTGAGGAATTC  1111
      |||||||||||
seq2  CTGAGGAATTC  1100