BAC Information

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BAC

Clone NameB6Ng01-030C08
Chromosome6 (Build37)
Map Location 54,920,649 - 55,038,237
singlet/doubletdoublet
Overlap geneNod1, A030007L17Rik, Gars
Upstream geneCpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2
Downstream geneCrhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030C08.bB6Ng01-030C08.g
ACCDH860138DH860139
length918903
definitionDH860138|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C08, 5' end.DH860139|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,037,311 - 55,038,237)(54,920,649 - 54,921,555)
sequence
gaattcattagcatcatggatactctcttgttttgttttgttttgttttg
ttttgtgttttgttttttttttgagacagggtttctctgtgtagctctgg
ctgtcctggaactcactctgtagaccaggctggcctcgaacccagaaatc
cacctgtgtctgccacccaagtgctgggattaaaggcatgcaccaccacc
gcccggcatggatgctctcttagagcaaagaggtgtaaatggctttgccc
caagaggctatatgaagagctgttgagactggaagagactggagacttat
cagagcctatgccacagagcctcagtaccacccacccgtgctcctcagta
acacccatcagtgctcctcagatgccctcctctgctgtaccactcattat
tacctagagggttcaggggtctgtgatgtatgctgggtgggacagtgcta
cccatgtctgcaccatgagaagtctccggttacagaccagttggatagag
atttcaccccaaccctgctctgcttcctaggccccagtcatggccatggc
tgagtggtgggtgtcctcaaaatgccaccagagacattagactatctctc
tgaatctacactcattaacatcactcagcatctgctccctacagcccagt
cagtcctcattaccgtcctgcagtcttctgtgctgttagtccctcactga
gtggccttcctggagagaagcctcattatcagattctgtcagaacaactt
ccaacacccagaccctgcaggccctcaggcgtttgtttagcccttccacc
caccctaccctagaaagctgggaataggaggggcacaccgggcaaatcct
cgtcctaatctatggctttgagactgcagactgaacccagcccagactag
tccagcccagggtccctt
gaattctcttctactgattcctgactgtctttgatgaacgagtccctggc
caggagtcaagaggagaacaagaacgctgggtacgatatctcaggctatt
gccagcaagagagccatgtgtgcagcataaattgtgagtcctgctgacag
cccacctttcttaagaatatatttggagccgggagtggtggcgcacgcct
ttaatcccagcactcgggaggcagaggcaggcggatttctgagttcaagg
ccagcctggtctacagagtgagttccaggacagccagggctatacagaga
aaccctgtctcgaataaccaaaaaaaaaaaaaaaaaaaaaaaaaagaata
tatttggtatagaagagcaggagagtggggctttaagggagacagtttct
ggacacactccatcatagtggctataccaaatagataattgtcttctagt
aacagagcccctgccagggaccataaggtgtggggtggatgttaccttaa
tctgtattaagcctcactttgtctagactttaccagtaagaaaagagagg
ctcgaagggatcattttgaacttgcagccaatcacatcactcaagtgaca
gaatcaaagattggaaccaggtttactgggtgtatgttcaataaaaacaa
aactcttgtgacctttgcaagggtcctccctctcccacctctctgccttg
ggtttttagtcttgcctctctcctggccagcatacctgtctgttttccag
tggctcctggatcacaactaccacacagatctctgctccaagtaaaacag
aggacctctcctctccacagatgtcctggaagttacccatacacttccag
gtatcctaacatctaagcagaaggctgcttttaggagggcatatagactc
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55037311_55038237
seq2: B6Ng01-030C08.b_44_961 (reverse)

seq1  AAGGGACCCCTGGGCTTGGAACTAGTCTGGGGCTGGGGTTCAGTCTGCAG  50
      |||||| |||||||||  | |||||||| ||||| |||||||||||||||
seq2  AAGGGA-CCCTGGGCT--GGACTAGTCT-GGGCT-GGGTTCAGTCTGCAG  45

seq1  TCTCAAAGCCATTGGATTAGGACGAGGAATTTGCCCGGTGTGCCCCCTCC  100
      ||||||||||| | ||||||||||||| |||||||||||||| |||||||
seq2  TCTCAAAGCCA-TAGATTAGGACGAGG-ATTTGCCCGGTGTG-CCCCTCC  92

seq1  TCTTTCCCAGCTTTCTAGGGTAGGGTGGGTGGAAGGGCTAAACAAACGCC  150
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ATTCCCAGCTTTCTAGGGTAGGGTGGGTGGAAGGGCTAAACAAACGCC  141

seq1  TGAGGGCCTGCAGGGTCTGGGTGTTGGAAGTTGTTCTGACAGAATCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCTGCAGGGTCTGGGTGTTGGAAGTTGTTCTGACAGAATCTGAT  191

seq1  AATGAGGCTTCTCTCCAGGAAGGCCACTCAGTGAGGGACTAACAGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCTTCTCTCCAGGAAGGCCACTCAGTGAGGGACTAACAGCACAG  241

seq1  AAGACTGCAGGACGGTAATGAGGACTGACTGGGCTGTAGGGAGCAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCAGGACGGTAATGAGGACTGACTGGGCTGTAGGGAGCAGATGC  291

seq1  TGAGTGATGTTAATGAGTGTAGATTCAGAGAGATAGTCTAATGTCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATGTTAATGAGTGTAGATTCAGAGAGATAGTCTAATGTCTCTGG  341

seq1  TGGCATTTTGAGGACACCCACCACTCAGCCATGGCCATGACTGGGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTGAGGACACCCACCACTCAGCCATGGCCATGACTGGGGCCTA  391

seq1  GGAAGCAGAGCAGGGTTGGGGTGAAATCTCTATCCAACTGGTCTGTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGAGCAGGGTTGGGGTGAAATCTCTATCCAACTGGTCTGTAACC  441

seq1  GGAGACTTCTCATGGTGCAGACATGGGTAGCACTGTCCCACCCAGCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTCTCATGGTGCAGACATGGGTAGCACTGTCCCACCCAGCATAC  491

seq1  ATCACAGACCCCTGAACCCTCTAGGTAATAATGAGTGGTACAGCAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACCCCTGAACCCTCTAGGTAATAATGAGTGGTACAGCAGAGGA  541

seq1  GGGCATCTGAGGAGCACTGATGGGTGTTACTGAGGAGCACGGGTGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTGAGGAGCACTGATGGGTGTTACTGAGGAGCACGGGTGGGTGG  591

seq1  TACTGAGGCTCTGTGGCATAGGCTCTGATAAGTCTCCAGTCTCTTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGCTCTGTGGCATAGGCTCTGATAAGTCTCCAGTCTCTTCCAGT  641

seq1  CTCAACAGCTCTTCATATAGCCTCTTGGGGCAAAGCCATTTACACCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGCTCTTCATATAGCCTCTTGGGGCAAAGCCATTTACACCTCTT  691

seq1  TGCTCTAAGAGAGCATCCATGCCGGGCGGTGGTGGTGCATGCCTTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGAGAGCATCCATGCCGGGCGGTGGTGGTGCATGCCTTTAATC  741

seq1  CCAGCACTTGGGTGGCAGACACAGGTGGATTTCTGGGTTCGAGGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGTGGCAGACACAGGTGGATTTCTGGGTTCGAGGCCAGCC  791

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCT  841

seq1  GTCTCAAAAAAAAAACAAAACACAAAACAAAACAAAACAAAACAAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAAAAAAACAAAACACAAAACAAAACAAAACAAAACAAAACAA  891

seq1  GAGAGTATCCATGATGCTAATGAATTC  927
      |||||||||||||||||||||||||||
seq2  GAGAGTATCCATGATGCTAATGAATTC  918

seq1: chr6_54920649_54921555
seq2: B6Ng01-030C08.g_70_972

seq1  GAATTCTCTTCTACTGATTCCTGACTGTCTTTGATGAACGAGTCCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTACTGATTCCTGACTGTCTTTGATGAACGAGTCCCTGGC  50

seq1  CAGGAGTCAAGAGGAGAACAAGAACGCTGGGTACGATATCTCAGGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCAAGAGGAGAACAAGAACGCTGGGTACGATATCTCAGGCTATT  100

seq1  GCCAGCAAGAGAGCCATGTGTGCAGCATAAATTGTGAGTCCTGCTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAGAGAGCCATGTGTGCAGCATAAATTGTGAGTCCTGCTGACAG  150

seq1  CCCACCTTTCTTAAGAATATATTTGGAGCCGGGAGTGGTGGCGCACGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTTCTTAAGAATATATTTGGAGCCGGGAGTGGTGGCGCACGCCT  200

seq1  TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGG  250

seq1  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA  300

seq1  AACCCTGTCTCGAATAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCGAATAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAATA  350

seq1  TATTTGGTATAGAAGAGCAGGAGAGTGGGGCTTTAAGGGAGACAGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTATAGAAGAGCAGGAGAGTGGGGCTTTAAGGGAGACAGTTTCT  400

seq1  GGACACACTCCATCATAGTGGCTATACCAAATAGATAATTGTCTTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACTCCATCATAGTGGCTATACCAAATAGATAATTGTCTTCTAGT  450

seq1  AACAGAGCCCCTGCCAGGGACCATAAGGTGTGGGGTGGATGTTACCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCCCCTGCCAGGGACCATAAGGTGTGGGGTGGATGTTACCTTAA  500

seq1  TCTGTATTAAGCCTCACTTTGTCTAGACTTTACCAGTAAGAAAAGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTAAGCCTCACTTTGTCTAGACTTTACCAGTAAGAAAAGAGAGG  550

seq1  CTCGAAGGGATCATTTTGAACTTGCAGCCAATCACATCACTCAAGTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGGGATCATTTTGAACTTGCAGCCAATCACATCACTCAAGTGACA  600

seq1  GAATCAAAGATTGGAACCAGGTTTACTGGGTGTATGTTCAATAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAGATTGGAACCAGGTTTACTGGGTGTATGTTCAATAAAAACAA  650

seq1  AACTCTTGTGACCTTTGCAAGGGTCCTCCCTCTCCCACCTCTCTGCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGTGACCTTTGCAAGGGTCCTCCCTCTCCCACCTCTCTGCCTTG  700

seq1  GGTTTTTAGTC-TGCCTCTCTCCTGGCCAGCATACCTGTCTGTTTTCCAG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAGTCTTGCCTCTCTCCTGGCCAGCATACCTGTCTGTTTTCCAG  750

seq1  TGGCTCCTGGATCACAACTACCACACAGATCTCTGCTCCCAGGTACAACA  799
      ||||||||||||||||||||||||||||||||||||| ||| ||| ||||
seq2  TGGCTCCTGGATCACAACTACCACACAGATCTCTGCT-CCAAGTAAAACA  799

seq1  GAGGAACCTCTCCTCTCCAACAGATGTCCTGGAAGTTACCCATACAC-TC  848
      |||| ||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GAGG-ACCTCTCCTCTCC-ACAGATGTCCTGGAAGTTACCCATACACTTC  847

seq1  CAGGTATCCTTAACATCTAAAGCAGGAAGGCTGCTTTTAGGAAGGCAATC  898
      ||||||||| |||||||| ||||| ||||||||||||||||| ||||   
seq2  CAGGTATCC-TAACATCT-AAGCA-GAAGGCTGCTTTTAGGAGGGCATAT  894

seq1  AGACTCCAT  907
      |||||||||
seq2  AGACTCCAT  903