BAC Information

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BAC

Clone NameB6Ng01-030H12
Chromosome6 (Build37)
Map Location 52,551,983 - 52,699,641
singlet/doubletdoublet
Overlap geneHibadh, Tax1bp1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841
Downstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030H12.bB6Ng01-030H12.g
ACCDH860369DH860370
length1,1361,086
definitionDH860369|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H12, 5' end.DH860370|Mus musculus domesticus DNA, BAC clone: B6Ng01-030H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,698,493 - 52,699,641)(52,551,983 - 52,553,091)
sequence
gaattcctgatctttccatgacttttatcatgaagggggttgttggattt
caaggtgaagttcaaaaatatattttgagcaatttcaaccatctaaactc
tacaccataccttctatacttcataacatacaaaaaacaacaacaaccaa
ccaaccaaccaacaaacaaacaaaacagctccaaaagtttcataaacctc
aatgtaaaagctgtctataaaacttctggatggaccacgagttgtagctc
actagcagatcactggcctaaggcctgggtttgatctccaagcacaacaa
aagcaaaacaagtaactcctggggcagtgcagggaatatgtttaatgcct
tgcagaatgtgtttaaaaaaaaaaaaagcacaaaatataaacaaaattga
tactctaccataattaaaatttgattttctaaaaacattaagcaaacaaa
atcaacatcacacatacaacagagaaaaagtaactccatctacacacaaa
gcatgagacctgtgtggatccccagcagccatgtaaaactcaggtgtgat
ggcatgcatttgcatttgcaagcccagagctgagatgcacagggccaggc
agatcccccagagctcgctgattggctagcctagccaattagtaatcttg
aggctcagggagaaagcctgttggaaagcaatcagttcacaattaactct
agtctccacagatgtacactcaaatgtgtacgtgtaccaacatgcacagg
catggcacatatacaacatgcacacatacatacgcacatatgcacatatc
taagaaagaaatgtaaacattatggaaatgcaacttaaactacaataata
ttctcattatagtcattagcttgatgtataaagtgataaaacagcaccaa
agaaaaactatgtactgatttcttacaaagccctatcctagcacctggca
tctgagtgaaatatctaatcccctttgacacaaaaggcttctatgtaaat
gttcacagtgcctctatcatcaagaatcccccccaagcattatcaccatt
tctctccactttcagaactgcttcagtgcacgctcctcactcagcacccc
aagtcttttagaaccctcacctgtccaccgggaaaa
gaattcccagctttttcatttaatggccctggccaagaatatttattgcc
tctagttttattctcacttagctctaagagggaatttaaactcatcatta
tcttaaagccccatacaaacatcgggcagctcacctgaggcagctcctct
tactgggtactagtttgagcctctactataagtgatgtaataatataaac
taattaaccacagttttatgttgactttttaacaagctaaataaattttg
ttcaatatagtttatattcccacttgggatagtaacgattccaaaaagtt
taactttacagttttcagtacaaacccagcagccgaacagagaagggcaa
agcttttctctcccttcccacaagcttggagtcctggttggtcttgccac
cctattcaagcctgcaatgagcctgcttcttctgagtcagatatggactc
cttcccattagcctcactgttgcagcgtagacagagtgcaaggtctaaga
tgtagatgttggatcatgcaaacttgtttttatatgagtactaataagaa
tatcaaagttcaaaccaattaaagaccgtgagatatcatcaaatattttt
aagtactaattcaaagtttgctattacaaatcccaggtccaaaagtcagt
tacatagttactattatgtctttcttaaaattatttctgaattttagaaa
aatctcatctctacacaggattttaaatcaaaatagttctttcaacaatc
tgagtgtttacaagaaataaactattctttttttgagctgtttatctaac
aaaagaatgctaaatgaagacattctataacctacaacaaagggttaata
tgtcattagtaaaaaagaaaaaatatttttccctctatttctttattttc
agaagttttataaacctatcttgcgagaaaagccaattacctattacagt
gtctgccagactatttttctactcttagttataaaaatgttagctgtttg
aaacaatatactctccaattaaagattagaagcaataattattatgctaa
gtacttggtggcgaggcttttatgttattttaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52698493_52699641
seq2: B6Ng01-030H12.b_45_1180 (reverse)

seq1  TTTTCCTGGTTGGACAGCTGAGTGTTCTAAAAAGACTTGGGGGTGGCTGA  50
      |||||| || ||||||| |||| ||||| |||||||||||||   |||||
seq2  TTTTCCCGG-TGGACAGGTGAGGGTTCT-AAAAGACTTGGGG--TGCTGA  46

seq1  GTGAGTGAGCGTGGCACTGGAAGCAGTCTGGAAAGTGGAGAGAAAATGGT  100
      ||||| |||||| ||||| ||||||||   |||||||||||| |||||||
seq2  GTGAG-GAGCGT-GCACT-GAAGCAGTTCTGAAAGTGGAGAG-AAATGGT  92

seq1  GATAATGCTTGGGGGGGGATTCTTGATTGATAGAGGCACTGTGAACATTT  150
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  GATAATGCTT-GGGGGGGATTCTTGA-TGATAGAGGCACTGTGAACATTT  140

seq1  ACATAGAAGCCTTTTGTGGTCAAAGGGGATTAGATATTTTCACTCAGATG  200
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ACATAGAAGCCTTTTGT-GTCAAAGGGGATTAGATA-TTTCACTCAGATG  188

seq1  CCCAGGTGCTAGGATAGGGCTTTGTAAGAAATCAGTACATAGTTTTTCTT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCAGGTGCTAGGATAGGGCTTTGTAAGAAATCAGTACATAGTTTTTCTT  237

seq1  TGGTGCTGTTTTATCACTTTATACATCAAGCTAATGACTATAATGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGTTTTATCACTTTATACATCAAGCTAATGACTATAATGAGAAT  287

seq1  ATTATTGTAGTTTAAGTTGCATTTCCATAATGTTTACATTTCTTTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTAGTTTAAGTTGCATTTCCATAATGTTTACATTTCTTTCTTAG  337

seq1  ATATGTGCATATGTGCGTATGTATGTGTGCATGTTGTATATGTGCCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCATATGTGCGTATGTATGTGTGCATGTTGTATATGTGCCATGC  387

seq1  CTGTGCATGTTGGTACACGTACACATTTGAGTGTACATCTGTGGAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGTTGGTACACGTACACATTTGAGTGTACATCTGTGGAGACTA  437

seq1  GAGTTAATTGTGAACTGATTGCTTTCCAACAGGCTTTCTCCCTGAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTGTGAACTGATTGCTTTCCAACAGGCTTTCTCCCTGAGCCTC  487

seq1  AAGATTACTAATTGGCTAGGCTAGCCAATCAGCGAGCTCTGGGGGATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTACTAATTGGCTAGGCTAGCCAATCAGCGAGCTCTGGGGGATCTG  537

seq1  CCTGGCCCTGTGCATCTCAGCTCTGGGCTTGCAAATGCAAATGCATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTGTGCATCTCAGCTCTGGGCTTGCAAATGCAAATGCATGCCA  587

seq1  TCACACCTGAGTTTTACATGGCTGCTGGGGATCCACACAGGTCTCATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTGAGTTTTACATGGCTGCTGGGGATCCACACAGGTCTCATGCT  637

seq1  TTGTGTGTAGATGGAGTTACTTTTTCTCTGTTGTATGTGTGATGTTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAGATGGAGTTACTTTTTCTCTGTTGTATGTGTGATGTTGATT  687

seq1  TTGTTTGCTTAATGTTTTTAGAAAATCAAATTTTAATTATGGTAGAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTTAATGTTTTTAGAAAATCAAATTTTAATTATGGTAGAGTAT  737

seq1  CAATTTTGTTTATATTTTGTGCTTTTTTTTTTTTTAAACACATTCTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTTTATATTTTGTGCTTTTTTTTTTTTTAAACACATTCTGCAA  787

seq1  GGCATTAAACATATTCCCTGCACTGCCCCAGGAGTTACTTGTTTTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAAACATATTCCCTGCACTGCCCCAGGAGTTACTTGTTTTGCTTT  837

seq1  TGTTGTGCTTGGAGATCAAACCCAGGCCTTAGGCCAGTGATCTGCTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTTGGAGATCAAACCCAGGCCTTAGGCCAGTGATCTGCTAGTG  887

seq1  AGCTACAACTCGTGGTCCATCCAGAAGTTTTATAGACAGCTTTTACATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAACTCGTGGTCCATCCAGAAGTTTTATAGACAGCTTTTACATTG  937

seq1  AGGTTTATGAAACTTTTGGAGCTGTTTTGTTTGTTTGTTGGTTGGTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATGAAACTTTTGGAGCTGTTTTGTTTGTTTGTTGGTTGGTTGGT  987

seq1  TGGTTGTTGTTGTTTTTTGTATGTTATGAAGTATAGAAGGTATGGTGTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTGTTGTTTTTTGTATGTTATGAAGTATAGAAGGTATGGTGTAG  1037

seq1  AGTTTAGATGGTTGAAATTGCTCAAAATATATTTTTGAACTTCACCTTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGATGGTTGAAATTGCTCAAAATATATTTTTGAACTTCACCTTGA  1087

seq1  AATCCAACAACCCCCTTCATGATAAAAGTCATGGAAAGATCAGGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACAACCCCCTTCATGATAAAAGTCATGGAAAGATCAGGAATTC  1136

seq1: chr6_52551983_52553091
seq2: B6Ng01-030H12.g_69_1154

seq1  GAATTCCCAGCTTTTTCATTTAATGGCCCTGGCCAAGAATATTTATTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTTTTTCATTTAATGGCCCTGGCCAAGAATATTTATTGCC  50

seq1  TCTAGTTTTATTCTCACTTAGCTCTAAGAGGGAATTTAAACTCATCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTTATTCTCACTTAGCTCTAAGAGGGAATTTAAACTCATCATTA  100

seq1  TCTTAAAGCCCCATACAAACATCGGGCAGCTCACCTGAGGCAGCTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGCCCCATACAAACATCGGGCAGCTCACCTGAGGCAGCTCCTCT  150

seq1  TACTGGGTACTAGTTTGAGCCTCTACTATAAGTGATGTAATAATATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTACTAGTTTGAGCCTCTACTATAAGTGATGTAATAATATAAAC  200

seq1  TAATTAACCACAGTTTTATGTTGACTTTTTAACAAGCTAAATAAATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACCACAGTTTTATGTTGACTTTTTAACAAGCTAAATAAATTTTG  250

seq1  TTCAATATAGTTTATATTCCCACTTGGGATAGTAACGATTCCAAAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATAGTTTATATTCCCACTTGGGATAGTAACGATTCCAAAAAGTT  300

seq1  TAACTTTACAGTTTTCAGTACAAACCCAGCAGCCGAACAGAGAAGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTACAGTTTTCAGTACAAACCCAGCAGCCGAACAGAGAAGGGCAA  350

seq1  AGCTTTTCTCTCCCTTCCCACAAGCTTGGAGTCCTGGTTGGTCTTGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTCTCCCTTCCCACAAGCTTGGAGTCCTGGTTGGTCTTGCCAC  400

seq1  CCTATTCAAGCCTGCAATGAGCCTGCTTCTTCTGAGTCAGATATGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCAAGCCTGCAATGAGCCTGCTTCTTCTGAGTCAGATATGGACTC  450

seq1  CTTCCCATTAGCCTCACTGTTGCAGCGTAGACAGAGTGCAAGGTCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATTAGCCTCACTGTTGCAGCGTAGACAGAGTGCAAGGTCTAAGA  500

seq1  TGTAGATGTTGGATCATGCAAACTTGTTTTTATATGAGTACTAATAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTTGGATCATGCAAACTTGTTTTTATATGAGTACTAATAAGAA  550

seq1  TATCAAAGTTCAAACCAATTAAAGACCGTGAGATATCATCAAATATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGTTCAAACCAATTAAAGACCGTGAGATATCATCAAATATTTTT  600

seq1  AAGTACTAATTCAAAGTTTGCTATTACAAATCCCAGGTCCAAAAGTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAATTCAAAGTTTGCTATTACAAATCCCAGGTCCAAAAGTCAGT  650

seq1  TACATAGTTACTATTATGTCTTTCTTAAAATTATTTCTGAATTTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTTACTATTATGTCTTTCTTAAAATTATTTCTGAATTTTAGAAA  700

seq1  AATCTCATCTCTACACAGGATTTTAAATCAAAATAGTTCTTTCAACAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATCTCTACACAGGATTTTAAATCAAAATAGTTCTTTCAACAATC  750

seq1  TGAGTGTTTACAAGAAATAAACTATTCTTTTTTTGAGCTGTTTATCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTACAAGAAATAAACTATTCTTTTTTTGAGCTGTTTATCTAAC  800

seq1  AAAAGAATGCTAAATGAAGACATTCTATAACCTACAACAAAGGGTTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGCTAAATGAAGACATTCTATAACCTACAACAAAGGGTTAATA  850

seq1  TGTCATTAGTAAAAAAGAAAAAATA-TTTTCCCTCTATTTCTTTATTTTC  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTCATTAGTAAAAAAGAAAAAATATTTTTCCCTCTATTTCTTTATTTTC  900

seq1  AGAAAGTTTTATAAACCTATCTTGGCGAGAAAAGCCAATTACCTATTACA  949
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AG-AAGTTTTATAAACCTATCTT-GCGAGAAAAGCCAATTACCTATTACA  948

seq1  GTGTCTGCCAAGACTATTTTTCTACTCTTAGTATATTAAAAAATGTTAGC  999
      ||||||||| |||||||||||||||||||||| |||  ||||||||||||
seq2  GTGTCTGCC-AGACTATTTTTCTACTCTTAGT-TAT--AAAAATGTTAGC  994

seq1  TGTTTGAAAACAAATATTACTCTCAAATTTAAAAGAATTAGAAGCAATAA  1049
      |||||||||   |||| ||||||| ||||  |||| ||||||||||||||
seq2  TGTTTGAAA--CAATA-TACTCTCCAATT--AAAG-ATTAGAAGCAATAA  1038

seq1  AATTTATTAATGCTAAAGTTACTTGTGTGCCAGGCTTTATATTGTTTTAT  1099
         ||||| |||||||   ||||||   || ||||||    || | ||||
seq2  ---TTATT-ATGCTAA--GTACTTGGTGGCGAGGCTT----TTATGTTAT  1078

seq1  TTTTAAAATC  1109
      |||  |||||
seq2  TTT--AAATC  1086