BAC Information

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BAC

Clone NameB6Ng01-030P01
Chromosome6 (Build37)
Map Location 103,476,583 - 103,552,205
singlet/doubletdoublet
Overlap geneChl1, LOC666141
Upstream genenone
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P01.bB6Ng01-030P01.g
ACCDH860697DH860698
length9821,083
definitionDH860697|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P01, 5' end.DH860698|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,551,193 - 103,552,205)(103,476,583 - 103,477,685)
sequence
gaattcactgaataataaagaccatttaagaaatgccaggagaaattgat
tactccaagagtcagaacaaccagctcagattggagaagaacaacaccat
ttagtcatagaattggtgaaagaaaagggggaaaagacaactacattcat
cttgttctgtattgtttttggatatcagaattgccagaagcagagagaca
tttaagctgagaagagctgtcgaaaagaaccctcttcaattgaaataaac
attgtaaagtactactgatatgcaaacagatatgcaaaatgatctaaaat
caatataggaatgtgaggacctagttgccctttccattgttaagtaattt
ggccaaaaattattattccactgaggtagaaagctgagaatacaaggctc
ttccctgttttatgatttaaaatatctgctaagtagtttaggatttaaac
atttctgtaatccgcctttcatatttttgtaattagtttgagcgccattt
tcctataaatcacccttttactttctcctacaataatgctaagatggaag
catcagaaaaagagaaataaggtaatctctgtttcttgaaaacattgaaa
agttcgatacaaatcaatatgtaaatcacaaacacactggatcttccttc
tgtagaaataaaaaaaatatacattttttttttcttttaaagctttgcat
agcagaacacacttgcaatctcagcactatgagggtggggctgtaagaat
cagaactacaaagttggccttggttatatgagaatctgtttcagaagaaa
gaaagaacgatgaagatggatgaagaagaaggagaaggagaggaggaatt
gttctagtctcttgctttgttctatctgatgagtcagattgaagcattac
ctctgtgtagatttcagttgccactacgatactcacaactatctcttagt
actcagtgctgtggcctgagacaagattcgtc
gaattcaagagaaaaagtgatagttttgagggactgtgattcagaaacaa
aaattcagattactgtgaaagaaccgtttcactggagaaaagatttaata
aacaaaggcatggatcaatgtatttgctagacactttgctgagggcagtc
cataaatgtcttgcaacaaatctgggaaaccactgctacaggactgtgat
gctatttaagctacctatctgctaagtggatatattctaaaagttttagt
caagagtctggagggtgttaaacaaaacacagagaagggcaataagtggc
tatcgtgggaactaaagataccacagggtaattttgacgtttcatctgca
ccattccagttctccatggtgacccttttaattcgtcccttcccttatag
gatctgcagcctggtgcatgagaaatctgcaagtaatataaccttatagg
agtatgcttctcgaatgggtttcattttcagatgataaaataacacttgt
cgtgagaactgcctgaggggcagagtagtagagaaccacggtgagttcca
tgagacagttcctctctggctgttggcatagagcgtacgatctccagttc
ttcccttttcacaacatgcagtaattttgctatagcacagatcactttct
tcttgttttgctttagcaacttgccattgtctgtcctttgaaatcaccaa
aatacctgcttctattttctccttgacacagacatttagctgccccctca
actgttctggaaaattccttgctcgttcttccaattgctagagcacagca
agtctcaccagatttctgccctgtatagcctctctttaccacagcctaat
gccactgttcaaatctctttcttgcttgtcattttgacaggatatcacgt
attcctggaaatctccctggctcccacagtttgctggccagtactgtcac
acttgctttccagtaagtggcactaggcttcatattctctctgcatcctg
tatcctagaggacctttgcacagcagccccaagtccccctctcccaggct
tctagttcccaacagactttagtggctttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103551193_103552205
seq2: B6Ng01-030P01.b_42_1023 (reverse)

seq1  GACGAATGTTTTGTCTCTAGGCCAC-GCACTGATGTTACTAAAGGAGATA  49
      ||||||  | ||||||| ||||||| |||||||   ||||||  ||||||
seq2  GACGAA--TCTTGTCTC-AGGCCACAGCACTGA--GTACTAA--GAGATA  43

seq1  GTTTGTGAGTATCGTAGTGGCTACCTGGAAATCTTACACAGGAGGTAATG  99
      | ||||||||||||||||||| ||   |||||| |||||| |||||||||
seq2  G-TTGTGAGTATCGTAGTGGCAAC--TGAAATC-TACACA-GAGGTAATG  88

seq1  CTTTCATATCTGAACTCTATCAGGATTAGAACAAAGCAAGAGACTATGAA  149
      | |||| ||||| |||| |||||   |||||||||||||||||||| |||
seq2  C-TTCA-ATCTG-ACTC-ATCAG--ATAGAACAAAGCAAGAGACTA-GAA  131

seq1  CATTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  199
      ||      ||||| |  ||||||  ||||| ||||  | | ||| ||  |
seq2  CA-----ATTCCTCCTCTCCTTC--TCCTT-CTTC--TTCATCCATC--T  169

seq1  CCTTCCTTCTTTCTTTCTTTCTGAAACAGATTCTCATATAACCAAGGCCA  249
       | || ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATCGTTCTTTCTTTC-TTCTGAAACAGATTCTCATATAACCAAGGCCA  218

seq1  ACTTTGTAGTTCTGATTCTTACAGCCCCACCCTCATAGTGCTGAGATTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGTTCTGATTCTTACAGCCCCACCCTCATAGTGCTGAGATTGC  268

seq1  AAGTGTGTTCTGCTATGCAAAGCTTTAAAAGAAAAAAAAAATGTATATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTCTGCTATGCAAAGCTTTAAAAGAAAAAAAAAATGTATATTT  318

seq1  TTTTTATTTCTACAGAAGGAAGATCCAGTGTGTTTGTGATTTACATATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTCTACAGAAGGAAGATCCAGTGTGTTTGTGATTTACATATTG  368

seq1  ATTTGTATCGAACTTTTCAATGTTTTCAAGAAACAGAGATTACCTTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATCGAACTTTTCAATGTTTTCAAGAAACAGAGATTACCTTATTT  418

seq1  CTCTTTTTCTGATGCTTCCATCTTAGCATTATTGTAGGAGAAAGTAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTGATGCTTCCATCTTAGCATTATTGTAGGAGAAAGTAAAAG  468

seq1  GGTGATTTATAGGAAAATGGCGCTCAAACTAATTACAAAAATATGAAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTATAGGAAAATGGCGCTCAAACTAATTACAAAAATATGAAAGG  518

seq1  CGGATTACAGAAATGTTTAAATCCTAAACTACTTAGCAGATATTTTAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTACAGAAATGTTTAAATCCTAAACTACTTAGCAGATATTTTAAAT  568

seq1  CATAAAACAGGGAAGAGCCTTGTATTCTCAGCTTTCTACCTCAGTGGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACAGGGAAGAGCCTTGTATTCTCAGCTTTCTACCTCAGTGGAAT  618

seq1  AATAATTTTTGGCCAAATTACTTAACAATGGAAAGGGCAACTAGGTCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTGGCCAAATTACTTAACAATGGAAAGGGCAACTAGGTCCTC  668

seq1  ACATTCCTATATTGATTTTAGATCATTTTGCATATCTGTTTGCATATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTATATTGATTTTAGATCATTTTGCATATCTGTTTGCATATCAG  718

seq1  TAGTACTTTACAATGTTTATTTCAATTGAAGAGGGTTCTTTTCGACAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTTACAATGTTTATTTCAATTGAAGAGGGTTCTTTTCGACAGCT  768

seq1  CTTCTCAGCTTAAATGTCTCTCTGCTTCTGGCAATTCTGATATCCAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCTTAAATGTCTCTCTGCTTCTGGCAATTCTGATATCCAAAAA  818

seq1  CAATACAGAACAAGATGAATGTAGTTGTCTTTTCCCCCTTTTCTTTCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGAACAAGATGAATGTAGTTGTCTTTTCCCCCTTTTCTTTCACC  868

seq1  AATTCTATGACTAAATGGTGTTGTTCTTCTCCAATCTGAGCTGGTTGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATGACTAAATGGTGTTGTTCTTCTCCAATCTGAGCTGGTTGTTC  918

seq1  TGACTCTTGGAGTAATCAATTTCTCCTGGCATTTCTTAAATGGTCTTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTGGAGTAATCAATTTCTCCTGGCATTTCTTAAATGGTCTTTAT  968

seq1  TATTCAGTGAATTC  1013
      ||||||||||||||
seq2  TATTCAGTGAATTC  982

seq1: chr6_103476583_103477685
seq2: B6Ng01-030P01.g_66_1148

seq1  GAATTCAAGAGAAAAAGTGATAGTTTTGAGGGACTGTGATTCAGAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAAAAGTGATAGTTTTGAGGGACTGTGATTCAGAAACAA  50

seq1  AAATTCAGATTACTGTGAAAGAACCGTTTCACTGGAGAAAAGATTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGATTACTGTGAAAGAACCGTTTCACTGGAGAAAAGATTTAATA  100

seq1  AACAAAGGCATGGATCAATGTATTTGCTAGACACTTTGCTGAGGGCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGCATGGATCAATGTATTTGCTAGACACTTTGCTGAGGGCAGTC  150

seq1  CATAAATGTCTTGCAACAAATCTGGGAAACCACTGCTACAGGACTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGTCTTGCAACAAATCTGGGAAACCACTGCTACAGGACTGTGAT  200

seq1  GCTATTTAAGCTACCTATCTGCTAAGTGGATATATTCTAAAAGTTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTAAGCTACCTATCTGCTAAGTGGATATATTCTAAAAGTTTTAGT  250

seq1  CAAGAGTCTGGAGGGTGTTAAACAAAACACAGAGAAGGGCAATAAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCTGGAGGGTGTTAAACAAAACACAGAGAAGGGCAATAAGTGGC  300

seq1  TATCGTGGGAACTAAAGATACCACAGGGTAATTTTGACGTTTCATCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTGGGAACTAAAGATACCACAGGGTAATTTTGACGTTTCATCTGCA  350

seq1  CCATTCCAGTTCTCCATGGTGACCCTTTTAATTCGTCCCTTCCCTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCAGTTCTCCATGGTGACCCTTTTAATTCGTCCCTTCCCTTATAG  400

seq1  GATCTGCAGCCTGGTGCATGAGAAATCTGCAAGTAATATAACCTTATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAGCCTGGTGCATGAGAAATCTGCAAGTAATATAACCTTATAGG  450

seq1  AGTATGCTTCTCGAATGGGTTTCATTTTCAGATGATAAAATAACACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTTCTCGAATGGGTTTCATTTTCAGATGATAAAATAACACTTGT  500

seq1  CGTGAGAACTGCCTGAGGGGCAGAGTAGTAGAGAACCACGGTGAGTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGAACTGCCTGAGGGGCAGAGTAGTAGAGAACCACGGTGAGTTCCA  550

seq1  TGAGACAGTTCCTCTCTGGCTGTTGGCATAGAGCGTACGATCTCCAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGTTCCTCTCTGGCTGTTGGCATAGAGCGTACGATCTCCAGTTC  600

seq1  TTCCCTTTTCACAACATGCAGTAATTTTGCTATAGCACAGATCACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTCACAACATGCAGTAATTTTGCTATAGCACAGATCACTTTCT  650

seq1  TCTTGTTTTGCTTTAGCAACTTGCCATTGTCTGTCCTTTGAAATCACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTGCTTTAGCAACTTGCCATTGTCTGTCCTTTGAAATCACCAA  700

seq1  AATACCTGCTTCTATTTTCTCCTTGACACAGACATTTAGCTGCCCCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGCTTCTATTTTCTCCTTGACACAGACATTTAGCTGCCCCCTCA  750

seq1  ACTGTTCTGGAAAATTCCTTGCTCGTTCTTCCAATTGCTAGAGCACAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTGGAAAATTCCTTGCTCGTTCTTCCAATTGCTAGAGCACAGCA  800

seq1  AGTCTCACCAGATTTCTGCCCTGTATAGCCTCTCTTTACCACAGCCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTCTCACCAGATTTCTGCCCTGTATAGCCTCTCTTTACCACAGCCT-AA  849

seq1  TGCCACTGTTCAAATCTCCTTTCTTGCTTGTCATTTTGACAAGGATATCA  900
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TGCCACTGTTCAAATCT-CTTTCTTGCTTGTCATTTTGAC-AGGATATCA  897

seq1  CGTATTTCCTGGAAATCTCCCCTGGCTCCCCACAGTTTTGCTGGCCAAGT  950
      |||| ||||||||||||| |||||||| ||||||| |||||||||| |||
seq2  CGTA-TTCCTGGAAATCT-CCCTGGCT-CCCACAG-TTTGCTGGCC-AGT  942

seq1  AACTGTCACACTTGCTTTCCAAGTAAAGTGGCACTAGGCTTCATTATTCT  1000
       ||||||||||||||||||| ||| |||||||||||||||||| ||||| 
seq2  -ACTGTCACACTTGCTTTCC-AGT-AAGTGGCACTAGGCTTCA-TATTC-  987

seq1  TCTCTGCATCCTTGTATCCTTAGAGACCCTGTAGCACAGCAGCCCCCAGT  1050
      ||||||||||| ||||||| |||||  ||| | ||||||||||||| |||
seq2  TCTCTGCATCC-TGTATCC-TAGAGGACCT-TTGCACAGCAGCCCCAAGT  1034

seq1  CCCCCTCCTCCCAAGCTTCTAGTTTCTCACACAGACTTTATGTGCTTTTC  1100
      |||||| |||||| |||||||| ||| || |||||||||| |||  ||||
seq2  CCCCCT-CTCCCAGGCTTCTAG-TTCCCA-ACAGACTTTA-GTGGCTTTC  1080

seq1  TTT  1103
      |||
seq2  TTT  1083