BAC Information

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BAC

Clone NameB6Ng01-031D20
Chromosome6 (Build37)
Map Location 54,189,214 - 54,305,514
singlet/doubletdoublet
Overlap geneChn2, LOC100042056, Prr15, EG640926
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305
Downstream geneWipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D20.bB6Ng01-031D20.g
ACCDH860913DH860914
length73680
definitionDH860913|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D20, 5' end.DH860914|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,304,778 - 54,305,514)(54,189,214 - 54,189,290)
sequence
gaattctgcagttactcccacagtacaaggagaagaaacagcagacagtc
cttaggccagtgagagctcttcctcctacccacatgggctgcaaggtccc
tctcaggtctgtggaaaagcttccttcagtcaatgctcgcactgaaatat
tctaaccatagctatgggtgcacagaggccagattccagctggggagact
gggctttaagcatcacagtgtcttaagatgataatgtgctttcttcttgt
ggttttggttttgtctcttttttttggggggggggatgttgagacagaac
cctgtgtacagagtgcagcatagccctgactgtcctgaaacttgctttgt
agaccaagctgacctctgactcacgtagatccacctgactctgcctccca
agtgctgggactaaaggtgtacgctaccacacttggcagtgatgatgtaa
tttttaattcatgtttttacttttgaattacatatttctcttggctggaa
tttgaactttggtttatgatagtatgtactgtcattaagtgtggttaata
tttttattattatcttggtatagcaacgagatatgtgtgtcttgctagaa
gctggatgcctatgtggcgggcccctcccattttggccatacaaatactc
cactgtttttcattcccctgaatagggtgtgagtaagaaggctggaaagg
catggatctttcctggagttcagaggcttgagaatc
aacgggtgtgtgagtgtttaggtgtttgtttttggttttgtttttgtttt
tggttttggttttggttttggttttggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54304778_54305514
seq2: B6Ng01-031D20.b_47_782 (reverse)

seq1  GATTCTCAAAGCCTCTGAACTCCAGGGAAGATCCCCTGCCTTTCCAGCCT  50
      ||||||| |||||||||||||||||| ||||| || ||||||||||||||
seq2  GATTCTC-AAGCCTCTGAACTCCAGGAAAGAT-CCATGCCTTTCCAGCCT  48

seq1  TCTTACTCACACCCTATTCA-GGGAATGAAAAAACAGTGGAGTATTTGTA  99
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TCTTACTCACACCCTATTCAGGGGAATG-AAAAACAGTGGAGTATTTGTA  97

seq1  TGGCC-AAATGGGAGGGGCCCGCCACATAGGCATCCAGCTCCTAGCAAGA  148
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGCCAAAATGGGAGGGGCCCGCCACATAGGCATCCAGCTTCTAGCAAGA  147

seq1  CACACATCTCTCGTTGCTATACCAAGATAATAATAAAAATATTAACCACA  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATCTCGTTGCTATACCAAGATAATAATAAAAATATTAACCACA  197

seq1  CTTAATGACAGTACATACTATCATAAACCAAAGTTCAAATTCCAGCCAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGACAGTACATACTATCATAAACCAAAGTTCAAATTCCAGCCAAG  247

seq1  AGAAATATGTAATTCAAAAGTAAAAACATGAATTAAAAATTACATCATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGTAATTCAAAAGTAAAAACATGAATTAAAAATTACATCATCA  297

seq1  CTGCCAAGTGTGGTAGCGTACACCTTTAGTCCCAGCACTTGGGAGGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGTGTGGTAGCGTACACCTTTAGTCCCAGCACTTGGGAGGCAGA  347

seq1  GTCAGGTGGATCTACGTGAGTCAGAGGTCAGCTTGGTCTACAAAGCAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGGATCTACGTGAGTCAGAGGTCAGCTTGGTCTACAAAGCAAGT  397

seq1  TTCAGGACAGTCAGGGCTATGCTGCACTCTGTACACAGGGTTCTGTCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAGTCAGGGCTATGCTGCACTCTGTACACAGGGTTCTGTCTCA  447

seq1  ACATCCCCCCCCCCAAAAAAAAGAGACAAAACCAAAACCACAAGAAGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCCCCCCCCAAAAAAAAGAGACAAAACCAAAACCACAAGAAGAAA  497

seq1  GCACATTATCATCTTAAGACACTGTGATGCTTAAAGCCCAGTCTCCCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTATCATCTTAAGACACTGTGATGCTTAAAGCCCAGTCTCCCCAG  547

seq1  CTGGAATCTGGCCTCTGTGCACCCATAGCTATGGTTAGAATATTTCAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCTGGCCTCTGTGCACCCATAGCTATGGTTAGAATATTTCAGTG  597

seq1  CGAGCATTGACTGAAGGAAGCTTTTCCACAGACCTGAGAGGGACCTTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCATTGACTGAAGGAAGCTTTTCCACAGACCTGAGAGGGACCTTGCA  647

seq1  GCCCATGTGGGTAGGAGGAAGAGCTCTCACTGGCCTAAGGACTGTCTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGGGTAGGAGGAAGAGCTCTCACTGGCCTAAGGACTGTCTGCT  697

seq1  GTTTCTTCTCCTTGTACTGTGGGAGTAACTGCAGAATTC  737
      |||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTCCTTGTACTGTGGGAGTAACTGCAGAATTC  736

seq1: chr6_54189214_54189290
seq2: B6Ng01-031D20.g_77_153

seq1  GGGTGTGTGAGTGTTTAGGTGTTTGTTTTTGGTTTTGTTTTTGTTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGAGTGTTTAGGTGTTTGTTTTTGGTTTTGTTTTTGTTTTTGG  50

seq1  TTTTGGTTTTGGTTTTGGTTTTGGTTT  77
      |||||||||||||||||||||||| ||
seq2  TTTTGGTTTTGGTTTTGGTTTTGGCTT  77