BAC Information

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BAC

Clone NameB6Ng01-031K16
Chromosome6 (Build37)
Map Location 120,114,877 - 120,256,460
singlet/doubletdoublet
Overlap geneNinj2, B4galnt3
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
Downstream geneCcdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031K16.bB6Ng01-031K16.g
ACCDH861215DH861216
length1,057861
definitionDH861215|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K16, 5' end.DH861216|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,255,387 - 120,256,460)(120,114,877 - 120,115,740)
sequence
gaattcaatccccagcaatgaaaaatataagtgctgctctggggctgggg
tctagctttagggttcagcacttgactagaatctaagaggttccaagctt
atctccagtaaaacacacacaaaacacacacacacacacacacacataca
tacacacacgttgtattttattcacatattaatagacctaattaaaacta
gatagtaagttattatggtgcaggaatttcatgttgatgactaaatatgt
atttttgtctgactaatatattctattatgcttgataattcagctcattt
gtctctatgttttaggcaattatacattcacttttagatgtagtaaacaa
ggcagtggtccagtatacatacattgtgcccaggatccttgagtccgtga
cttccctctgccgtggttagctacactgagcatgtcagttttggctttgt
gatattctgtttcactctgggctcctcatggtcacatctaccaatcactc
agcattcagcaatagaagtgctaatcttaaattactacaactttaatatg
actgtgctgattgtctcagagccttttaattgtcaaccatgccttgacat
ttggagagacaattaaatattaaatgtgggacccagaatctgaatgagcc
tgtatgatcacacaagcgtttttataagatttcatttggcttcaggctcc
gtaatcagtctagactgatctgtctggagcacttttacttagattatagt
gttggcccctccagccctgcatctgttgtgttacttcccagaccagctcc
tgatagcttctgagggaaagagccccattctctgtgctaagctccacaat
ctctttcttagtttatgtcaaagccataaactccttccctggaaaacacc
gtgtgaagctattccttgctagacatctcttctgttcccaagcacacttc
gttctcgtttgtgaaatcagtgttagccaaagcagctgccagttttctct
cagaaactcttggccgtcttccttgcaggtggactcacctggccagtcct
cacctcc
gaattcagatctgagtgacagcagccaaggtgccccagctgctcaggagg
ctggaggagacattaatgtaaatctggatgccaacttgcttctggcacat
tccccaagactcagacactaaccagcgtaggcaggtggatgaggaggtgg
gaatgatgcctgaggtatataagtgttggcaccggagcatgctccagtca
tggtaatgcaaaccctgatgctagtaagactgggaaatgagattccatcc
agcatgctggatgcagagccctcactcttcataccttagtggacttcaca
gggtctagttcatctaactctgctgaggtcagggctcagatctcaatgaa
gctgtctgtaatcatgctgtgagctcctctctgaaccatggatttaggat
ttatgtctgggtggagctactcagccccacctactagaccctgccaggct
cagaggtcatataaagtccagcagagcttgatatagggccaatgccgcct
ggttaggagatcaccattcctagcactgggatgccccacaaatatctact
tagttgtgttattatcatctctttttgttttaagatttatttatgtatgt
gagtacacggcagctgtcttcagacacaccagaaaaagacatcagatccc
attacagatggttgtaagccaccatgtggtttgctggaaattgaacttag
gacctctagaagagtagttagtgctctttaaccgcttgagccatctctcc
cagcctattatcctctctctctttttttttttttatttaaagggagcctc
tccttcctctttttttttttttaaagattttttattatttattttgttgt
tatttatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120255387_120256460
seq2: B6Ng01-031K16.b_45_1101 (reverse)

seq1  GGAGGTGAGGACTGGGGGCCAGGTGAGTCCAACCTGCAGGGGAGAACGGC  50
      |||||||||||||   |||||||||||||| ||||||| || || |||||
seq2  GGAGGTGAGGACT---GGCCAGGTGAGTCC-ACCTGCAAGGAAG-ACGGC  45

seq1  C-AGAGTGTCTGAGAGATAACTGGGCAGGCTGCCTTTGGCTAAAACACTG  99
      | ||||| ||||||||| |||| |||| |||| ||||||||  |||||||
seq2  CAAGAGTTTCTGAGAGAAAACT-GGCA-GCTG-CTTTGGCT--AACACTG  90

seq1  AATTTCACAAACGAGAACGAAGTGTGCTTTGGGAAACAAGAAGAGATGGT  149
       |||||||||||||||||||||||||| |||||||   ||||||||| ||
seq2  -ATTTCACAAACGAGAACGAAGTGTGC-TTGGGAA--CAGAAGAGAT-GT  135

seq1  CTAGCAAAGGAATAGCTTCACACGGTTGTTTTTCCAGGGAAGGAGTTTAT  199
      ||||| ||||||||||||||||||||   |||||||||||||||||||||
seq2  CTAGC-AAGGAATAGCTTCACACGGT--GTTTTCCAGGGAAGGAGTTTAT  182

seq1  GGCTTTGACATAAACTAAGAAAGAGATTGTGGAGCTTAGCACAGAGAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGACATAAACTAAGAAAGAGATTGTGGAGCTTAGCACAGAGAATG  232

seq1  GGGCTCTTTCCCTCAGAAGCTATCAGGAGCTGGTCTGGGAAGTAACACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTTCCCTCAGAAGCTATCAGGAGCTGGTCTGGGAAGTAACACAA  282

seq1  CAGATGCAGGGCTGGAGGGGCCAACACTATAATCTAAGTAAAAGTGCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAGGGCTGGAGGGGCCAACACTATAATCTAAGTAAAAGTGCTCC  332

seq1  AGACAGATCAGTCTAGACTGATTACGGAGCCTGAAGCCAAATGAAATCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATCAGTCTAGACTGATTACGGAGCCTGAAGCCAAATGAAATCTT  382

seq1  ATAAAAACGCTTGTGTGATCATACAGGCTCATTCAGATTCTGGGTCCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACGCTTGTGTGATCATACAGGCTCATTCAGATTCTGGGTCCCAC  432

seq1  ATTTAATATTTAATTGTCTCTCCAAATGTCAAGGCATGGTTGACAATTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTTAATTGTCTCTCCAAATGTCAAGGCATGGTTGACAATTAA  482

seq1  AAGGCTCTGAGACAATCAGCACAGTCATATTAAAGTTGTAGTAATTTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTGAGACAATCAGCACAGTCATATTAAAGTTGTAGTAATTTAAG  532

seq1  ATTAGCACTTCTATTGCTGAATGCTGAGTGATTGGTAGATGTGACCATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCACTTCTATTGCTGAATGCTGAGTGATTGGTAGATGTGACCATGA  582

seq1  GGAGCCCAGAGTGAAACAGAATATCACAAAGCCAAAACTGACATGCTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGAGTGAAACAGAATATCACAAAGCCAAAACTGACATGCTCAG  632

seq1  TGTAGCTAACCACGGCAGAGGGAAGTCACGGACTCAAGGATCCTGGGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTAACCACGGCAGAGGGAAGTCACGGACTCAAGGATCCTGGGCAC  682

seq1  AATGTATGTATACTGGACCACTGCCTTGTTTACTACATCTAAAAGTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGTATACTGGACCACTGCCTTGTTTACTACATCTAAAAGTGAAT  732

seq1  GTATAATTGCCTAAAACATAGAGACAAATGAGCTGAATTATCAAGCATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTGCCTAAAACATAGAGACAAATGAGCTGAATTATCAAGCATAA  782

seq1  TAGAATATATTAGTCAGACAAAAATACATATTTAGTCATCAACATGAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATATTAGTCAGACAAAAATACATATTTAGTCATCAACATGAAAT  832

seq1  TCCTGCACCATAATAACTTACTATCTAGTTTTAATTAGGTCTATTAATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACCATAATAACTTACTATCTAGTTTTAATTAGGTCTATTAATAT  882

seq1  GTGAATAAAATACAACGTGTGTGTATGTATGTGTGTGTGTGTGTGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAAATACAACGTGTGTGTATGTATGTGTGTGTGTGTGTGTGTGT  932

seq1  GTTTTGTGTGTGTTTTACTGGAGATAAGCTTGGAACCTCTTAGATTCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTGTGTTTTACTGGAGATAAGCTTGGAACCTCTTAGATTCTAG  982

seq1  TCAAGTGCTGAACCCTAAAGCTAGACCCCAGCCCCAGAGCAGCACTTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCTGAACCCTAAAGCTAGACCCCAGCCCCAGAGCAGCACTTATA  1032

seq1  TTTTTCATTGCTGGGGATTGAATTC  1074
      |||||||||||||||||||||||||
seq2  TTTTTCATTGCTGGGGATTGAATTC  1057

seq1: chr6_120114877_120115740
seq2: B6Ng01-031K16.g_67_927

seq1  GAATTCAGATCTGAGTGACAGCAGCCAAGGTGCCCCAGCTGCTCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCTGAGTGACAGCAGCCAAGGTGCCCCAGCTGCTCAGGAGG  50

seq1  CTGGAGGAGACATTAATGTAAATCTGGATGCCAACTTGCTTCTGGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAGACATTAATGTAAATCTGGATGCCAACTTGCTTCTGGCACAT  100

seq1  TCCCCAAGACTCAGACACTAACCAGCGTAGGCAGGTGGATGAGGAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGACTCAGACACTAACCAGCGTAGGCAGGTGGATGAGGAGGTGG  150

seq1  GAATGATGCCTGAGGTATATAAGTGTTGGCACCGGAGCATGCTCCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGCCTGAGGTATATAAGTGTTGGCACCGGAGCATGCTCCAGTCA  200

seq1  TGGTAATGCAAACCCTGATGCTAGTAAGACTGGGAAATGAGATTCCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGCAAACCCTGATGCTAGTAAGACTGGGAAATGAGATTCCATCC  250

seq1  AGCATGCTGGATGCAGAGCCCTCACTCTTCATACCTTAGTGGACTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTGGATGCAGAGCCCTCACTCTTCATACCTTAGTGGACTTCACA  300

seq1  GGGTCTAGTTCATCTAACTCTGCTGAGGTCAGGGCTCAGATCTCAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAGTTCATCTAACTCTGCTGAGGTCAGGGCTCAGATCTCAATGAA  350

seq1  GCTGTCTGTAATCATGCTGTGAGCTCCTCTCTGAACCATGGATTTAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTAATCATGCTGTGAGCTCCTCTCTGAACCATGGATTTAGGAT  400

seq1  TTATGTCTGGGTGGAGCTACTCAGCCCCACCTACTAGACCCTGCCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGGGTGGAGCTACTCAGCCCCACCTACTAGACCCTGCCAGGCT  450

seq1  CAGAGGTCATATAAAGTCCAGCAGAGCTTGATATAGGGCCAATGCCGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCATATAAAGTCCAGCAGAGCTTGATATAGGGCCAATGCCGCCT  500

seq1  GGTTAGGAGATCACCATTCCTAGCACTGGGATGCCCCACAAATATCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAGATCACCATTCCTAGCACTGGGATGCCCCACAAATATCTACT  550

seq1  TAGTTGTGTTATTATCATCTCTTTTTGTTTTAAGATTTATTTATGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTGTTATTATCATCTCTTTTTGTTTTAAGATTTATTTATGTATGT  600

seq1  GAGTACACGGCAGCTGTCTTCAGACACACCAGAAAAAGACATCAGATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACGGCAGCTGTCTTCAGACACACCAGAAAAAGACATCAGATCCC  650

seq1  ATTACAGATGGTTGTAAGCCACCATGTGG-TTGCTGGAAATTGAACTCAG  699
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  ATTACAGATGGTTGTAAGCCACCATGTGGTTTGCTGGAAATTGAACTTAG  700

seq1  GACCTCTAGAAGAGTAGTTAGTGCTC-TTAACCGCTTGAGCCATCTCTCC  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACCTCTAGAAGAGTAGTTAGTGCTCTTTAACCGCTTGAGCCATCTCTCC  750

seq1  AGCCCTATTATCCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTAAAGGGAG  798
         ||||||||||||||||||    ||||||||||||| |||||||||||
seq2  CAGCCTATTATCCTCTCTCTC----TTTTTTTTTTTTTATTTAAAGGGAG  796

seq1  -CTCTCCTT-CTCTTTTTTTTTTTTTAAAGATTTTTTTATTTATTTATTT  846
       |||||||| |||||||||||||||||||||||||||   ||||||||||
seq2  CCTCTCCTTCCTCTTTTTTTTTTTTTAAAGATTTTTT--ATTATTTATTT  844

seq1  GTTTGTTTATTTATTTAT  864
        ||| ||||||||||||
seq2  TGTTG-TTATTTATTTAT  861