BAC Information

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BAC

Clone NameB6Ng01-031O03
Chromosome6 (Build37)
Map Location 12,750,425 - 12,895,734
singlet/doubletdoublet
Overlap geneLOC667735
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031O03.bB6Ng01-031O03.g
ACCDH861374DH861375
length1,1221,146
definitionDH861374|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O03, 5' end.DH861375|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,894,601 - 12,895,734)(12,750,425 - 12,751,625)
sequence
gaattcctagcaggccagatggggacaatctgaatctctcttgtaatgtt
tcacatgtgttatattaggtaagaatgttcagctctatgcatttgttttc
ttatgtatcaaaattatatagtagcatcctatactagacacctggaatat
gaaaagtattcaataaatatgaacgatttagtagtggtaaaatgataata
taataaaataataaaataaataaaataataaaaataataatagctaataa
aatgaacaccaaatcctaatctgtgtctattattaacagaatttatatca
ggctgaatattttctgcataaaagagaaattaaattcaacaacttatgtt
ccataatcagcattatctttcatagtgtttcatcaacttttttaagaaat
caaagacaaccaaaataacaagcatgaccaaacatggaatttttgagttt
aaaccaagaagatagtttgtttgacagatagtctctcatgtaacctagtc
tggcctcagattttctgtgtaacaaggaaaatgctttacaaagtgttggc
atcacataagaagcgcttcaggaatgtcctttgggatgaggtgttttatc
tcatgtcttagaagaagtgtcctaagtaagtacatcactcagcatgaaaa
tattactgcttgggtctagggtggggcattatgatgaattcacatgccct
tgaaagcatccttgattagagatagcttctaatgtgatgaggattctgag
cagatccagaaggtatttgtcatggcattttcacttctttaaatcatctt
tttttctttcttgtagaaattgatcagaagttattcgtgatccaaagtcc
tctctgttttcctagctgcatgctctcgtctttgttcttcttttttataa
ctcaagtgatgggaccacagtaggattgtgtccacagtgaccgtcataat
ggatacagtttcctagtcatctcccatgagctcctagagatctcagccag
cttccacatttcatatattcagagacaaagttcatagcataatagagata
gtttaactctcccaaattgactatggagataaatatttggtaaataatgt
agcttttagggggcagatggtt
gaattctatatctggatgcacaggcaacaggaagagatagacatggggac
tggcatgagcttttgaaatcccaaggcttaccccaagtgatacacttcct
cagcgatgtcacacctactcaaacaaaatgacacctcctaacccctctaa
agtagtgccactctctattgaccaagaattcaaatatattaggccatggg
ggctattcctatccaaaccaacacaatttctttaaagcattttgagaaag
catctttgattttcatttttctaatttatgatagtaattttattttcaaa
gttactcagtgtgacatccttctggtgttttgtttccatcctcctgactg
cccctccttgactctttgttgtctttccatgaacactttatttattttaa
agatttatttatttttttaattatatatacagtattctgcctgcatatat
gcttacatgccagttgagggtgccagatcttattatagatgatagttatt
agccaccacgtggttgctgggaattgaacccaggacctctggaagaacag
taagtgctcactacctctgagccatctctccagtcccttgatgctttaag
taatgtctgttacacgcttttgagaacagcaaggtactctttcctcttgt
gtagatgcatccatttcttcatattttttttttgtggctatatacattgt
gattcataaagacacttttagagcacatcatgtattttcataccatatat
ataccctatactctcctgtttcttccctcttctctctctcctactactct
ccctcatccccaccccaccccaaatttttctttgctctcatgtcatatat
ggatctctataaactctggtaccaaagagagtggaaatatgtatttattc
attttgagcatttcagacacatttctgttctctactgtggtttcttgcat
actttccaagagtgtcagatattttctttattactctgagaaagatagaa
ggaaagtctttcatcttatttttatcattatattgatcatcttttgatca
atgaaaggtttagcattctatatttcaattcctgtcagcacttatctgag
gtaattaataccttaataactttctcttaaaattgtgtgggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12894601_12895734
seq2: B6Ng01-031O03.b_45_1166 (reverse)

seq1  AACCATCTGCCACGTTAAAGCTACATTAATATAACAGAAATAATTATCT-  49
      ||||||||||| | | ||||||||||| || || |  ||||| |||||| 
seq2  AACCATCTGCCCCCTAAAAGCTACATT-ATTTACC--AAATATTTATCTC  47

seq1  CATAGTC-ATGTTGGAGAGTTAAAACTTATCTCTATTATGCTATGAACTT  98
      ||||||| || | |||||||||||   |||||||||||||||||||||||
seq2  CATAGTCAATTTGGGAGAGTTAAA--CTATCTCTATTATGCTATGAACTT  95

seq1  TTGTTCTCTGAATATATGAAATGTGGAAGCTGGCTGAAGATCTCTAGGAG  148
      |   |||||||||||||||||||||||||||||||| |||||||||||||
seq2  T--GTCTCTGAATATATGAAATGTGGAAGCTGGCTG-AGATCTCTAGGAG  142

seq1  CTCATGGGAGATGACTAGGAAACTGTATTCCATTATTGACGGTCACTGTG  198
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CTCATGGGAGATGACTAGGAAACTGTA-TCCATTA-TGACGGTCACTGTG  190

seq1  GACACAATCCTACTGTGGTTCCCATCACTTGAGTTATTAAAAAAGAAGAA  248
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  GACACAATCCTACTGTGG-TCCCATCACTTGAGTTA-TAAAAAAGAAGAA  238

seq1  CAAAGACGAGAGCATGCAGCTAGGAAAACAGAGAGGACTTTGGATCACGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACGAGAGCATGCAGCTAGGAAAACAGAGAGGACTTTGGATCACGA  288

seq1  ATAACCTTCTGATCAATTTTCTACAAGAAAGAAAAAAAGATGATTTAAAG  348
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAA-CTTCTGATCAA-TTTCTACAAGAAAGAAAAAAAGATGATTTAAAG  336

seq1  AAGTGAAAATGCCATGACAAATACCTTCTGGATCTGCTCAGAATCCTCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAATGCCATGACAAATACCTTCTGGATCTGCTCAGAATCCTCAT  386

seq1  CACATTAGAAGCTATCTCTAATCAAGGATGCTTTCAAGGGCATGTGAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGAAGCTATCTCTAATCAAGGATGCTTTCAAGGGCATGTGAATT  436

seq1  CATCATAATGCCCCACCCTAGACCCAAGCAGTAATATTTTCATGCTGAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAATGCCCCACCCTAGACCCAAGCAGTAATATTTTCATGCTGAGT  486

seq1  GATGTACTTACTTAGGACACTTCTTCTAAGACATGAGATAAAACACCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTTACTTAGGACACTTCTTCTAAGACATGAGATAAAACACCTCA  536

seq1  TCCCAAAGGACATTCCTGAAGCGCTTCTTATGTGATGCCAACACTTTGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGGACATTCCTGAAGCGCTTCTTATGTGATGCCAACACTTTGTA  586

seq1  AAGCATTTTCCTTGTTACACAGAAAATCTGAGGCCAGACTAGGTTACATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCCTTGTTACACAGAAAATCTGAGGCCAGACTAGGTTACATG  636

seq1  AGAGACTATCTGTCAAACAAACTATCTTCTTGGTTTAAACTCAAAAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTATCTGTCAAACAAACTATCTTCTTGGTTTAAACTCAAAAATTC  686

seq1  CATGTTTGGTCATGCTTGTTATTTTGGTTGTCTTTGATTTCTTAAAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGGTCATGCTTGTTATTTTGGTTGTCTTTGATTTCTTAAAAAAG  736

seq1  TTGATGAAACACTATGAAAGATAATGCTGATTATGGAACATAAGTTGTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAACACTATGAAAGATAATGCTGATTATGGAACATAAGTTGTTG  786

seq1  AATTTAATTTCTCTTTTATGCAGAAAATATTCAGCCTGATATAAATTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTTCTCTTTTATGCAGAAAATATTCAGCCTGATATAAATTCTG  836

seq1  TTAATAATAGACACAGATTAGGATTTGGTGTTCATTTTATTAGCTATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAGACACAGATTAGGATTTGGTGTTCATTTTATTAGCTATTAT  886

seq1  TATTTTTATTATTTTATTTATTTTATTATTTTATTATATTATCATTTTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTATTTTATTTATTTTATTATTTTATTATATTATCATTTTAC  936

seq1  CACTACTAAATCGTTCATATTTATTGAATACTTTTCATATTCCAGGTGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTAAATCGTTCATATTTATTGAATACTTTTCATATTCCAGGTGTC  986

seq1  TAGTATAGGATGCTACTATATAATTTTGATACATAAGAAAACAAATGCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGGATGCTACTATATAATTTTGATACATAAGAAAACAAATGCAT  1036

seq1  AGAGCTGAACATTCTTACCTAATATAACACATGTGAAACATTACAAGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAACATTCTTACCTAATATAACACATGTGAAACATTACAAGAGA  1086

seq1  GATTCAGATTGTCCCCATCTGGCCTGCTAGGAATTC  1134
      ||||||||||||||||||||||||||||||||||||
seq2  GATTCAGATTGTCCCCATCTGGCCTGCTAGGAATTC  1122

seq1: chr6_12750425_12751625
seq2: B6Ng01-031O03.g_67_1212

seq1  GAATTCTATATCTGGATGCACAGGCAACAGGAAGAGATAGACATGGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATCTGGATGCACAGGCAACAGGAAGAGATAGACATGGGGAC  50

seq1  TGGCATGAGCTTTTGAAATCCCAAGGCTTACCCCAAGTGATACACTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAGCTTTTGAAATCCCAAGGCTTACCCCAAGTGATACACTTCCT  100

seq1  CAGCGATGTCACACCTACTCAAACAAAATGACACCTCCTAACCCCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATGTCACACCTACTCAAACAAAATGACACCTCCTAACCCCTCTAA  150

seq1  AGTAGTGCCACTCTCTATTGACCAAGAATTCAAATATATTAGGCCATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGCCACTCTCTATTGACCAAGAATTCAAATATATTAGGCCATGGG  200

seq1  GGCTATTCCTATCCAAACCAACACAATTTCTTTAAAGCATTTTGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCCTATCCAAACCAACACAATTTCTTTAAAGCATTTTGAGAAAG  250

seq1  CATCTTTGATTTTCATTTTTCTAATTTATGATAGTAATTTTATTTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGATTTTCATTTTTCTAATTTATGATAGTAATTTTATTTTCAAA  300

seq1  GTTACTCAGTGTGACATCCTTCTGGTGTTTTGTTTCCATCCTCCTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCAGTGTGACATCCTTCTGGTGTTTTGTTTCCATCCTCCTGACTG  350

seq1  CCCCTCCTTGACTCTTTGTTGTCTTTCCATGAACACTTTATTTATTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTGACTCTTTGTTGTCTTTCCATGAACACTTTATTTATTTTAA  400

seq1  AGATTTATTTATTTTTTTAATTATATATACAGTATTCTGCCTGCATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTATTTTTTTAATTATATATACAGTATTCTGCCTGCATATAT  450

seq1  GCTTACATGCCAGTTGAGGGTGCCAGATCTTATTATAGATGATAGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATGCCAGTTGAGGGTGCCAGATCTTATTATAGATGATAGTTATT  500

seq1  AGCCACCACGTGGTTGCTGGGAATTGAACCCAGGACCTCTGGAAGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACGTGGTTGCTGGGAATTGAACCCAGGACCTCTGGAAGAACAG  550

seq1  TAAGTGCTCACTACCTCTGAGCCATCTCTCCAGTCCCTTGATGCTTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTCACTACCTCTGAGCCATCTCTCCAGTCCCTTGATGCTTTAAG  600

seq1  TAATGTCTGTTACACGCTTTTGAGAACAGCAAGGTACTCTTTCCTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTGTTACACGCTTTTGAGAACAGCAAGGTACTCTTTCCTCTTGT  650

seq1  GTAGATGCATCCATTTCTTCATATTTTTTTTTTGTGGCTATATACATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGCATCCATTTCTTCATATTTTTTTTTTGTGGCTATATACATTGT  700

seq1  GATTCATAAAGACACTTTTAGAGCACATCATGTATTTTCATACCATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATAAAGACACTTTTAGAGCACATCATGTATTTTCATACCATATAT  750

seq1  ATACCCTATACTCTCCTGTTTCTTCCCTCTTCTCTCTCTCCTACTACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTATACTCTCCTGTTTCTTCCCTCTTCTCTCTCTCCTACTACTCT  800

seq1  CCCTCATCCCCACCCCACCCCCAAATTTTTCTTTGCTCTCATGTCATATA  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCTCATCCCCACCCCA-CCCCAAATTTTTCTTTGCTCTCATGTCATATA  849

seq1  TGGATCTCTATAAACTCTGGTACCAAAGAGAGGTGGAAATATGTATTTAT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGATCTCTATAAACTCTGGTACCAAAGAGA-GTGGAAATATGTATTTAT  898

seq1  TCATTTTGAGCATTTCAGACACCATTTCCTGTTCTCTACTGTGGTTTCTT  950
      ||||||||||||||||||||| ||||| |||||||||||||||||||| |
seq2  TCATTTTGAGCATTTCAGACA-CATTT-CTGTTCTCTACTGTGGTTTC-T  945

seq1  TGCAATACTTTCCAAAGAGTGTTCAGATATTTTCCTCTATTACTCTGAGG  1000
      ||| ||||||||| ||||||| ||||||||||| || ||||||||||| |
seq2  TGC-ATACTTTCC-AAGAGTG-TCAGATATTTT-CTTTATTACTCTGA-G  990

seq1  ATAGATAGAAGAGAAAGTCTTTCATCCTTTATTTTTATCATTTATATTGG  1050
      | ||||||||| ||||||||||||||  |||||||||||| |||||||| 
seq2  AAAGATAGAAG-GAAAGTCTTTCATC--TTATTTTTATCA-TTATATTG-  1035

seq1  ATTCATTCTTTTGAATCAAAATGAAAAGTTTTAGCATTTCTTATATTTTC  1100
        ||| ||||||| |||  |||| |||| |||||||||   |||| ||||
seq2  -ATCA-TCTTTTG-ATC--AATG-AAAGGTTTAGCATT--CTATA-TTTC  1076

seq1  AGATCCCTGTTTCAGCATCTTTAATCTCTTGAGGTGTAAAATTTTATATC  1150
      | || ||||  |||||| |||  |||   ||||||     | || ||| |
seq2  A-ATTCCTG--TCAGCA-CTT--ATC---TGAGGT-----AATTAATACC  1112

seq1  ACTTAAATCTAATAACTTTCTCCCTTAAAAACAATTGTGTGTGGGGAGGG  1200
               ||||||||||||  |||||    ||||||||   |||||||
seq2  --------TTAATAACTTTCT--CTTAA----AATTGTGT---GGGAGGG  1145

seq1  T  1201
      |
seq2  T  1146