BAC Information

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BAC

Clone NameB6Ng01-033E05
Chromosome6 (Build37)
Map Location 85,533,196 - 85,639,858
singlet/doubletdoublet
Overlap geneAlms1
Upstream geneCyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033E05.bB6Ng01-033E05.g
ACCDH862366DH862367
length985447
definitionDH862366|Mus musculus domesticus DNA, BAC clone: B6Ng01-033E05, 5' end.DH862367|Mus musculus domesticus DNA, BAC clone: B6Ng01-033E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,638,864 - 85,639,858)(85,533,196 - 85,533,648)
sequence
gaattcagaaaggaaatggctttttgcaatcttaatagtgaaaactgttg
ctacttagggactaagacatatgcactggtctctggatctgctgaagcaa
aggctggtgagtcctgcttcaggcagggtgtgaaagccatggataggagc
aaagaccttctgcatttccaaagaccagttgcatttacagtgcatatttt
ggtaaattgctatgaaaagacaaacttcagggtcaggcggatttctgagt
tcgaggacagcctggtctacagagtgagttccaggacaacacagaaaaac
cctgtatcaaaaaaccaaaaaccaaaaaaggaagaatgaaagaaagaaaa
gaaagacaagacaaacattcaaaactatagtctaaaaaaagtccacccaa
caaaaagtgcttatgtacaaatgtccttatgacatgaaaggacctctatg
atggtgaaagtcaaatgagacaaaacaaatactaacagggatgttcacaa
cttggaacattcatactgcttctgggtgtaaagtgtaagggcatgtttga
acaggaatttgggattggaaggaattttcccaagctcacctcatgatggc
tcttccaagtttactaacaaaaataatgcttatactaaagactgtttcta
aaacatttcacatacaaagaaaacattaaacattctcagaggaatttagt
attagaaggttggtttttaaaaatatccctagaaataaataaatatatat
gtatgtatgtgtgtgtgtgtatgcataagacagtgagcacatgctacagc
atgacatgaaagcactaggtgaggtgcagctgaacatcctagagtaaagc
ccaagtcaagcaacaggacaggcaggaatacggacttccacccagattcc
aaagtcacttggaaagacctgtacttgtgtcagctggttgggatccactc
gaatacattttcaagagtctttgaagatgctggca
actctatagaccaggctggccttgaactcagagatctattgcctcctgca
tgctgggattaaaggcatgtgccaccaccaccacgcagtttgtgaagtcc
agattctttacgtcttgctcttgaatctcagttttgggattgcatcagat
tcttgagtccttatgcctcagatttaaagttatatgtaagattccttgga
ccaagatccctgagtctccagcctgttgtgggtcttttcagcttccataa
ccatgtaatttttatccaaattccttattatctttcacatgtatatctct
gtataacaccttctctcactttgtctaagaaagaagaaacttatagaaat
tgcaggtcttttcgggcggtggtggcacacggttttagttccagcacttg
ggaggcagaggcaggcggatttctgagttcgaggccagcctggtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85638864_85639858
seq2: B6Ng01-033E05.b_46_1030 (reverse)

seq1  TGCCAGCATCTGTCAAAGACTCTTTGAAAATGTATTCTGTGGTGGATCCC  50
      ||||||||||| |||||||||| ||||||||||||||    |||||||||
seq2  TGCCAGCATCT-TCAAAGACTC-TTGAAAATGTATTC--GAGTGGATCCC  46

seq1  CAAAACCAGCTGGACACAAGTACAGGTCTTTCCAAGGTGACTTTGGAATC  100
         |||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  ---AACCAGCT-GACACAAGTACAGGTCTTTCCAA-GTGACTTTGGAATC  91

seq1  TGGGTAGAAGTCAGTATTCCCTGCCTGTCCTGTTGCTTGACTTGGGCTTT  150
      ||||| |||||| ||||| |||||||||||||||||||||||||||||||
seq2  TGGGTGGAAGTCCGTATT-CCTGCCTGTCCTGTTGCTTGACTTGGGCTTT  140

seq1  ACTCTAGGATGTTCAGCTGCACCTCACCTAGTGCTTTCATGTCATGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGATGTTCAGCTGCACCTCACCTAGTGCTTTCATGTCATGCTGT  190

seq1  AGCATGTGCTCACTGTCTTATGCATACACACACACACATACATACATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCTCACTGTCTTATGCATACACACACACACATACATACATATA  240

seq1  TATTTATTTATTTCTAGGGATATTTTTAAAAACCAACCTTCTAATACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTCTAGGGATATTTTTAAAAACCAACCTTCTAATACTAA  290

seq1  ATTCCTCTGAGAATGTTTAATGTTTTCTTTGTATGTGAAATGTTTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGAGAATGTTTAATGTTTTCTTTGTATGTGAAATGTTTTAGAA  340

seq1  ACAGTCTTTAGTATAAGCATTATTTTTGTTAGTAAACTTGGAAGAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTTAGTATAAGCATTATTTTTGTTAGTAAACTTGGAAGAGCCAT  390

seq1  CATGAGGTGAGCTTGGGAAAATTCCTTCCAATCCCAAATTCCTGTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTGAGCTTGGGAAAATTCCTTCCAATCCCAAATTCCTGTTCAAA  440

seq1  CATGCCCTTACACTTTACACCCAGAAGCAGTATGAATGTTCCAAGTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTTACACTTTACACCCAGAAGCAGTATGAATGTTCCAAGTTGTG  490

seq1  AACATCCCTGTTAGTATTTGTTTTGTCTCATTTGACTTTCACCATCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCCTGTTAGTATTTGTTTTGTCTCATTTGACTTTCACCATCATAG  540

seq1  AGGTCCTTTCATGTCATAAGGACATTTGTACATAAGCACTTTTTGTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTTCATGTCATAAGGACATTTGTACATAAGCACTTTTTGTTGGG  590

seq1  TGGACTTTTTTTAGACTATAGTTTTGAATGTTTGTCTTGTCTTTCTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTTTTTAGACTATAGTTTTGAATGTTTGTCTTGTCTTTCTTTTC  640

seq1  TTTCTTTCATTCTTCCTTTTTTGGTTTTTGGTTTTTTGATACAGGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCATTCTTCCTTTTTTGGTTTTTGGTTTTTTGATACAGGGTTTT  690

seq1  TCTGTGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCA  740

seq1  GAAATCCGCCTGACCCTGAAGTTTGTCTTTTCATAGCAATTTACCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGACCCTGAAGTTTGTCTTTTCATAGCAATTTACCAAAAT  790

seq1  ATGCACTGTAAATGCAACTGGTCTTTGGAAATGCAGAAGGTCTTTGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGTAAATGCAACTGGTCTTTGGAAATGCAGAAGGTCTTTGCTCC  840

seq1  TATCCATGGCTTTCACACCCTGCCTGAAGCAGGACTCACCAGCCTTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGGCTTTCACACCCTGCCTGAAGCAGGACTCACCAGCCTTTGCT  890

seq1  TCAGCAGATCCAGAGACCAGTGCATATGTCTTAGTCCCTAAGTAGCAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGATCCAGAGACCAGTGCATATGTCTTAGTCCCTAAGTAGCAACA  940

seq1  GTTTTCACTATTAAGATTGCAAAAAGCCATTTCCTTTCTGAATTC  995
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTATTAAGATTGCAAAAAGCCATTTCCTTTCTGAATTC  985

seq1: chr6_85533196_85533648
seq2: B6Ng01-033E05.g_66_518

seq1  GAATTCACTCTATAGACCAGGCTGGCCTTGAACTCAGAGATCTATTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTTGAACTCAGAGATCTATTGCCT  50

seq1  CCTGCATGCTGGGATTAAAGGCATGTGCCACCACCACCACGCAGTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGCTGGGATTAAAGGCATGTGCCACCACCACCACGCAGTTTGTG  100

seq1  AAGTCCAGATTCTTTACGTCTTGCTCTTGAATCTCAGTTTTGGGATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGATTCTTTACGTCTTGCTCTTGAATCTCAGTTTTGGGATTGCA  150

seq1  TCAGATTCTTGAGTCCTTATGCCTCAGATTTAAAGTTATATGTAAGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTTGAGTCCTTATGCCTCAGATTTAAAGTTATATGTAAGATTC  200

seq1  CTTGGACCAAGATCCCTGAGTCTCCAGCCTGTTGTGGGTCTTTTCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACCAAGATCCCTGAGTCTCCAGCCTGTTGTGGGTCTTTTCAGCTT  250

seq1  CCATAACCATGTAATTTTTATCCAAATTCCTTATTATCTTTCACATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACCATGTAATTTTTATCCAAATTCCTTATTATCTTTCACATGTAT  300

seq1  ATCTCTGTATAACACCTTCTCTCACTTTGTCTAAGAAAGAAGAAACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTATAACACCTTCTCTCACTTTGTCTAAGAAAGAAGAAACTTAT  350

seq1  AGAAATTGCAGGTCTTTTCGGGCGGTGGTGGCACACGGCTTTAATTCCAG  400
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGAAATTGCAGGTCTTTTCGGGCGGTGGTGGCACACGGTTTTAGTTCCAG  400

seq1  CACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT  450

seq1  CTA  453
      |||
seq2  CTA  453