BAC Information

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BAC

Clone NameB6Ng01-034A06
Chromosome6 (Build37)
Map Location 66,394,302 - 66,395,335
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A06.bB6Ng01-034A06.g
ACCDH862898DH862899
length1,013990
definitionDH862898|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A06, 5' end.DH862899|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatgaactgcgaactgcgatgaagtacagtaggatctgcccac
ctcttcaagtgctgactcaaaaatgcataacgtttcccttttctcctctc
tgtctcttactttgtggggctggccagaacctaagcgcactttccctgct
cctcttggcttccttgcttttctctgaagcccttacaacattctttgctt
gttggggcccggcctgcggctctcatgtccgggttcgagcctgggaggca
acctggagctgaaagagaagagggaacctaggcaggtagagaaataatgg
aaccaagacatgctagtctgctcaaggttcgaatgtttaataaaaaagtc
tgcgcttataaagagggaaacccatcccctatcacgccaaatttcttgat
gttgtcagcacagccttttagcagtaattcaccagattcacaggttgtag
ttaactccggaaaatcttggagaacctgctcggcctcactgcaggtggca
ggcagtgtaacttcaaaggaagctagttgagtctgagaagcagcactgca
ggtgtccctgcctcggtggcttacatctgaaccagccttcctaggctgaa
ggaggttatatttgctatgcagctccttgtccatcacatggctgacctcc
atgcctactcaaatgggcctccttctcccctcttgccatcccttcctcac
cctctttctttttccctcgttggatggtgcccataggtagtttctctttt
ttttttttcagtagatcctccaatattggttcatttatccctaatagttt
tagctataatcacctgcaatcaaggccatttattattttgctcagtttac
aaagggaatcattttcttctttttttcaatgagtagtagctttataggac
atctgccagactctatgatatgacaaataggagactggcagaccgtggcc
atgctcatagtggctacactcaggagtcatggctggatttataatgactt
ggaggaggggggt
gaattcttggtttagctctgagccacatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtatt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcgattctcgatctaacagcacaagccattgctgttc
tattcaggaatatttcccctgtacccatatcttcgaggcttttccctact
ttctcctctatgagtttcagggtctctggttttatgtggagttccttaat
ccacttaaatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgataaccacgagttgtgtcagcaccatttgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgagttcatttctgagtcttcaattctattccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcagggatggtgattccaccagaggttctttt
atccttgagaagagtttttcctatcctaggttttttgttattccagatga
attagcagattgctctttctaattcattgaagaattaagttggaattttg
atggggattgtattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgattctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtcttatcatcag
atctttcacttccttagttatagtcacggcaaggtatttttatgatttgt
ggactattggggagggtgtggttccctatattctctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66394302_66395335
seq2: B6Ng01-034A06.b_47_1059

seq1  GAATTCCTATGAACTGCGAACTGCGATGAAGTACAGTAGGATCTGCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGAACTGCGAACTGCGATGAAGTACAGTAGGATCTGCCCAC  50

seq1  CTCTTCAAGTGCTGACTCAAAAATGCATAACGTTTCCCTTTTCTCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAGTGCTGACTCAAAAATGCATAACGTTTCCCTTTTCTCCTCTC  100

seq1  TGTCTCTTACTTTGTGGGGCTGGCCAGAACCTAAGCGCACTTTCCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTACTTTGTGGGGCTGGCCAGAACCTAAGCGCACTTTCCCTGCT  150

seq1  CCTCTTGGCTTCCTTGCTTTTCTCTGAAGCCCTTACAACATTCTTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGCTTCCTTGCTTTTCTCTGAAGCCCTTACAACATTCTTTGCTT  200

seq1  GTTGGGGCCCGGCCTGCGGCTCTCATGTCCGGGTTCGAGCCTGGGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGCCCGGCCTGCGGCTCTCATGTCCGGGTTCGAGCCTGGGAGGCA  250

seq1  ACCTGGAGCTGAAAGAGAAGAGGGAACCTAGGCAGGTAGAGAAATAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGCTGAAAGAGAAGAGGGAACCTAGGCAGGTAGAGAAATAATGG  300

seq1  AACCAAGACATGCTAGTCTGCTCAAGGTTCGAATGTTTAATAAAAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGACATGCTAGTCTGCTCAAGGTTCGAATGTTTAATAAAAAAGTC  350

seq1  TGCGCTTATAAAGAGGGAAACCCATCCCCTATCACGCCAAATTTCTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTATAAAGAGGGAAACCCATCCCCTATCACGCCAAATTTCTTGAT  400

seq1  GTTGTCAGCACAGCCTTTTAGCAGTAATTCACCAGATTCACAGGTTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGCACAGCCTTTTAGCAGTAATTCACCAGATTCACAGGTTGTAG  450

seq1  TTAACTCCGGAAAATCTTGGAGAACCTGCTCGGCCTCACTGCAGGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCGGAAAATCTTGGAGAACCTGCTCGGCCTCACTGCAGGTGGCA  500

seq1  GGCAGTGTAACTTCAAAGGAAGCTAGTTGAGTCTGAGAAGCAGCACTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTAACTTCAAAGGAAGCTAGTTGAGTCTGAGAAGCAGCACTGCA  550

seq1  GGTGTCCCTGCCTCGGTGGCTTACATCTGAACCAGCCTTCCTAGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCTGCCTCGGTGGCTTACATCTGAACCAGCCTTCCTAGGCTGAA  600

seq1  GGAGGTTATATTTGCTATGCAGCTCCTTGTCCATCACATGGCTGACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTATATTTGCTATGCAGCTCCTTGTCCATCACATGGCTGACCTCC  650

seq1  ATGCCTACTCAAAT-GGCCTCCTTCTCCCCTCTTGCCATCCCTTCCTCAC  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGCCTACTCAAATGGGCCTCCTTCTCCCCTCTTGCCATCCCTTCCTCAC  700

seq1  CCTCTTTCTTTTTCCCTCGTTGGATGGTGCCCCATAGGTAGTTTCTCTTT  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTCTTTCTTTTTCCCTCGTTGGATGGTG-CCCATAGGTAGTTTCTCTTT  749

seq1  TTTTTTTTTCAAGTAGATCCTCCAATATTTGTTTCATTATATCCCT-ATA  798
      |||||||||| |||||||||||||||| ||| |||||| ||||||| |||
seq2  TTTTTTTTTC-AGTAGATCCTCCAATA-TTGGTTCATT-TATCCCTAATA  796

seq1  GTTTTAGCTATAATCACCTGCAATTCAAGCCATTTTATTATTTTGCTCAG  848
      ||||||||||||||||||||||| ||||| |  |||||||||||||||||
seq2  GTTTTAGCTATAATCACCTGCAA-TCAAGGCCATTTATTATTTTGCTCAG  845

seq1  TTTACAAA-GGAATCATTTTCTTCTTTTTTTCAAAATGAAGTAGTAAGCT  897
      |||||||| |||||||||||||||||||||||  |||| |||||| ||||
seq2  TTTACAAAGGGAATCATTTTCTTCTTTTTTTC--AATG-AGTAGT-AGCT  891

seq1  TTATAGGACAATTCTGCCCAGACTCTTAATGATATGACAAAAATAAGGAG  947
      ||||||||||  |||| |||||||||  |||||||||||||    |||||
seq2  TTATAGGACA--TCTG-CCAGACTCT--ATGATATGACAAA---TAGGAG  933

seq1  AACTTGCCAGACACAGTGGCACATGCTCATAGTGCCTACACTCAGGAGTC  997
       ||| ||   | || ||||| ||||||||||||| |||||||||||||||
seq2  -ACTGGC---AGACCGTGGC-CATGCTCATAGTGGCTACACTCAGGAGTC  978

seq1  ATGCCTGGATTATATAATGACTTTGGAGGATGGGGGT  1034
      ||| ||||||| ||||||||| |||||||| ||||||
seq2  ATGGCTGGATT-TATAATGAC-TTGGAGGAGGGGGGT  1013