BAC Information

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BAC

Clone NameB6Ng01-034A20
Chromosome6 (Build37)
Map Location 40,622,909 - 40,776,976
singlet/doubletdoublet
Overlap geneMgam, EG638904
Upstream geneBraf, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneMoxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A20.bB6Ng01-034A20.g
ACCDH862924DH862925
length644613
definitionDH862924|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A20, 5' end.DH862925|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,776,342 - 40,776,976)(40,622,909 - 40,623,522)
sequence
gaattcttactaagaaacaccacgatgatcagtggggaaatataccttta
gacacaccatcatcccagtacagctggccctttgcctcgcgcttataatc
caaagcaatgatgagtcccatgggattcttccggctgacgagaacaattc
caagtttcagacaatgaacaaaggcagaaacagattaatttggcccttga
tgattctaccccttgatgcctaggggtgtatcctccagagtctatcccag
aaactgagtagatgttagcattttgtaaaaacacggtgtgaaaaagtagc
agaatgtggaaaagagagaatgtaagaacaacggtggggtgaggtgggtt
tgtgatcattttaacaaggctgattagaccctgtgacaggcactgttgta
agtgtgcttcagatactgtcctttatatttaattcagttagccctcacaa
aggtgaggccatcatcccctccagtttaccagtagcaagtgtggacacag
acacactgtccaaacgctaaacacatgtaggatgttttcaggccagagtt
ttgaactaatattctgctgcaagaatctgagcccctgaaactccaaaaca
atattgactttttgcccccctactaaattcttctcatgtattgg
gaattcccatgtctagatttggatccactgtccatctttttaaaatcttc
accttcctttccatcccttccaccaaactctttccttcctgtgacaaatg
aaagtgtaaggttaacagctgaagtgtcacttatacttgctgggagaggg
aaaatcagttttctccaaaggagtgacactgggtatatcaaccactccag
aacaggcttcattttcaggagtagctgattgacatatgatagactccaag
ttttgtttgttgttgttatttgggttttttgtttgtttttttgtgcatgt
ttgtatatgcttttacagtgtggtatttatttttctcttttggggtgtgg
ttttattttgttttatttatttattttttgcttttgcttttttgtattgg
gtttttgtttgttttttgagaaagaactttaagttgcgtcagtgttgggg
gaaaaatctggaaagacataggggagggaaagaatatgatcaaaatatat
ttaaaatttaataaatttaaattatataataataatatatccacttacca
atgtcacagatctcttctcatcattgacttcagttgtggactccatctgc
attccactgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40776342_40776976
seq2: B6Ng01-034A20.b_42_685 (reverse)

seq1  CCAATACATGAGAAGAATTTAGTAGGGGG--CAAAAGTCAATATTG-TTT  47
      |||||||||||||||||||||||||||||   |||||||||||||| |||
seq2  CCAATACATGAGAAGAATTTAGTAGGGGGGCAAAAAGTCAATATTGTTTT  50

seq1  GGAGTTTCA-GGGCTCAGATTC-TGCAGCAGAATTTTAGTTC-AAACTCT  94
      ||||||||| |||||||||||| ||||||||||| ||||||| |||||||
seq2  GGAGTTTCAGGGGCTCAGATTCTTGCAGCAGAATATTAGTTCAAAACTCT  100

seq1  GGCCTGAAAACATCCTACATGTG-TTAGCG-TTGGACAGTGTGTCTGTGT  142
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GGCCTGAAAACATCCTACATGTGTTTAGCGTTTGGACAGTGTGTCTGTGT  150

seq1  CCACACTTGCTACTGGTAAACTGGAGGGGATGATGGCCTCACCTTTGTGA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGCTACTGGTAAACTGGAGGGGATGATGGCCTCACCTTTGTGA  200

seq1  GGGCTAACTGAATT-AATATAAAGGACAGTATCTGGAGCACACTTACAAC  241
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  GGGCTAACTGAATTAAATATAAAGGACAGTATCTGAAGCACACTTACAAC  250

seq1  AGTGCCTGTCACAGGGTCTAATCAGCCTTGTTAAAATGATCACAAACCCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGTCACAGGGTCTAATCAGCCTTGTTAAAATGATCACAAACCCA  300

seq1  CCTCACCCCACCGTTGTTCTTACATTCTCTCTTTTCCACATTCTGCTACT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCACCGTTGTTCTTACATTCTCTCTTTTCCACATTCTGCTACT  350

seq1  TTTTCACACCGTGTTTTTACAAAATGCTAACATCTACTCAGTTTCTGGGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACCGTGTTTTTACAAAATGCTAACATCTACTCAGTTTCTGGGA  400

seq1  TAGACTCTGGAGGATACACCCCTAGGCATCAAGGGGTAGAATCATCAAGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTGGAGGATACACCCCTAGGCATCAAGGGGTAGAATCATCAAGG  450

seq1  GCCAAATTAATCTGTTTCTGCCTTTGTTCATTGTCTGAAACTTGGAATTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATTAATCTGTTTCTGCCTTTGTTCATTGTCTGAAACTTGGAATTG  500

seq1  TTCTCGTCAGCCGGAAGAATCCCATGGGACTCATCATTGCTTTGGATTAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTCAGCCGGAAGAATCCCATGGGACTCATCATTGCTTTGGATTAT  550

seq1  AAGCGCGAGGCAAAGGGCCAGCTGTACTGGGATGATGGTGTGTCTAAAGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCGAGGCAAAGGGCCAGCTGTACTGGGATGATGGTGTGTCTAAAGG  600

seq1  TATATTTCCCCACTGATCATCGTGGTGTTTCTTAGTAAGAATTC  635
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCCCACTGATCATCGTGGTGTTTCTTAGTAAGAATTC  644

seq1: chr6_40622909_40623522
seq2: B6Ng01-034A20.g_65_677

seq1  GAATTCCCATGTCTAGATTTGGATCCACTGTCCATCTTTTTAAAATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTCTAGATTTGGATCCACTGTCCATCTTTTTAAAATCTTC  50

seq1  ACCTTCCTTTCCATCCCTTCCACCAAACTCTTTCCTTCCTGTGACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTTTCCATCCCTTCCACCAAACTCTTTCCTTCCTGTGACAAATG  100

seq1  AAAGTGTAAGGTTAACAGCTGAAGTGTCACTTATACTTGCTGGGAGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAAGGTTAACAGCTGAAGTGTCACTTATACTTGCTGGGAGAGGG  150

seq1  AAAATCAGTTTTCTCCAAAGGAGTGACACTGGGTATATCAACCACTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTTTTCTCCAAAGGAGTGACACTGGGTATATCAACCACTCCAG  200

seq1  AACAGGCTTCATTTTCAGGAGTAGCTGATTGACATATGATAGACTCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTTCATTTTCAGGAGTAGCTGATTGACATATGATAGACTCCAAG  250

seq1  TTTTGTTTGTTGTTGTTATTTGGGTTTTTTGTTTGTTTTTTTGTGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTGTTGTTATTTGGGTTTTTTGTTTGTTTTTTTGTGCATGT  300

seq1  TTGTATATGCTTTTACAGTGTGGTATTTATTTTTCTCTTTTGGGGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATGCTTTTACAGTGTGGTATTTATTTTTCTCTTTTGGGGTGTGG  350

seq1  TTTTATTTTGTTTTATTTATTTATTTTTTGCTTTTGCTTTTTTGTATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGTTTTATTTATTTATTTTTTGCTTTTGCTTTTTTGTATTGG  400

seq1  GTTTTTGTTTGTTTTTTGAGAAAGAACTTTAAGTTGCGTCAGTGTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTGTTTTTTGAGAAAGAACTTTAAGTTGCGTCAGTGTTGGGG  450

seq1  GAAAAATCTGGAAAGACATAGGGGAGGGAAAGAATATGATCAAAATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCTGGAAAGACATAGGGGAGGGAAAGAATATGATCAAAATATAT  500

seq1  TTAAAATTTAATAAATTTAAATTTATATAATAATAATATATCCACTTACC  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAAAATTTAATAAATTTAAA-TTATATAATAATAATATATCCACTTACC  549

seq1  AATGTCACAGATCTCTTCTCATCATTGACTTCAGTTGTGGACTCCATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACAGATCTCTTCTCATCATTGACTTCAGTTGTGGACTCCATCTG  599

seq1  CATTCCACTGAAGA  614
      ||||||||||||||
seq2  CATTCCACTGAAGA  613