BAC Information

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BAC

Clone NameB6Ng01-034B24
Chromosome6 (Build37)16 (Build37)
Map Location 13,644,036 - 13,644,67563,441,903 - 63,442,445
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
Downstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B24.bB6Ng01-034B24.g
ACCDH862974DH862975
length698896
definitionDH862974|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B24, 5' end.DH862975|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,644,036 - 13,644,675)(63,441,903 - 63,442,445)
sequence
gaattccagataaagttaccatagcccaggtgttgggagcccttttgtct
ccttctgtaaaagcatgcctgtcaggcagggtcaaggcaggccagtctct
gctggcagatttcctgaagagccatggaaccataagagggggcgcacttg
aagctcaaggtgaggggatgaatggtatgttagtcttgaaggaagaaaca
tgaaggcctccagataggaacagatatccaatgtccatcagccattgtct
ctactagcttgtgactttgtttcccatgatactgtaaagtatataaaggc
catgagaaattcattcagggctgcagtggtgtagacctcccgatttctaa
ccgttgtctccgagtcttcttttctttctttcctataatcaccctcactt
ccccctcgaggactgttgaactctgcatgggcaggactggtacacccagg
tggcttgaagattagaaacagtgttggctggatgggtcaatgggtaaaga
aataaaccggctaagcctgatgtcttgattttaatcctaaaacccacatg
gttgaacagagagccagctcctctaggctattaactgaccttctctctct
ctctctgtctctctctgtctctctctctgtctgtctctctgtctgtctgt
ctctctgtctgtctgtctctctctctctctctctctctctctctcaca
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttagaggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatgggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcattttctgattttgttg
attaggattttgtccctgtgtccttttagttgagtctagctaagggttta
tctatctcggttgattttccaaagaaacaaactccttcgtttgtttattc
tttgaatagttcttccttgttttcacttggttatttcaccccctgaattt
gattatttcctgccgtctacctctcttgggtggatttgcttccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13644036_13644675
seq2: B6Ng01-034B24.b_47_686 (reverse)

seq1  AGAGAGACAGACAGAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGACAGAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGAGAA  50

seq1  GGTCAGTTAATAGCCTAGAGGAGCTGGCTCTCTGTTCAACCATGTGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTAATAGCCTAGAGGAGCTGGCTCTCTGTTCAACCATGTGGGTT  100

seq1  TTAGGATTAAAATCAAGACATCAGGCTTAGCCGGTTTATTTCTTTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTAAAATCAAGACATCAGGCTTAGCCGGTTTATTTCTTTACCCA  150

seq1  TTGACCCATCCAGCCAACACTGTTTCTAATCTTCAAGCCACCTGGGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCATCCAGCCAACACTGTTTCTAATCTTCAAGCCACCTGGGTGTA  200

seq1  CCAGTCCTGCCCATGCAGAGTTCAACAGTCCTCGAGGGGGAAGTGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGCCCATGCAGAGTTCAACAGTCCTCGAGGGGGAAGTGAGGGT  250

seq1  GATTATAGGAAAGAAAGAAAAGAAGACTCGGAGACAACGGTTAGAAATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAGGAAAGAAAGAAAAGAAGACTCGGAGACAACGGTTAGAAATCG  300

seq1  GGAGGTCTACACCACTGCAGCCCTGAATGAATTTCTCATGGCCTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTACACCACTGCAGCCCTGAATGAATTTCTCATGGCCTTTATAT  350

seq1  ACTTTACAGTATCATGGGAAACAAAGTCACAAGCTAGTAGAGACAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAGTATCATGGGAAACAAAGTCACAAGCTAGTAGAGACAATGGC  400

seq1  TGATGGACATTGGATATCTGTTCCTATCTGGAGGCCTTCATGTTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACATTGGATATCTGTTCCTATCTGGAGGCCTTCATGTTTCTTCC  450

seq1  TTCAAGACTAACATACCATTCATCCCCTCACCTTGAGCTTCAAGTGCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACTAACATACCATTCATCCCCTCACCTTGAGCTTCAAGTGCGCC  500

seq1  CCCTCTTATGGTTCCATGGCTCTTCAGGAAATCTGCCAGCAGAGACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTATGGTTCCATGGCTCTTCAGGAAATCTGCCAGCAGAGACTGGC  550

seq1  CTGCCTTGACCCTGCCTGACAGGCATGCTTTTACAGAAGGAGACAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGACCCTGCCTGACAGGCATGCTTTTACAGAAGGAGACAAAAGG  600

seq1  GCTCCCAACACCTGGGCTATGGTAACTTTATCTGGAATTC  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAACACCTGGGCTATGGTAACTTTATCTGGAATTC  640

seq1: chr16_63441903_63442445
seq2: B6Ng01-034B24.g_415_963 (reverse)

seq1  AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAAC  50
      ||||||||||||| ||||||||||  ||||||||||||||||||||||| 
seq2  AAAGGAAGCAAATCCACCCAAGAGAGGTAGACGGCAGGAAATAATCAAAT  50

seq1  TCA-GGGGTGAAATCAACCAAGTGGAAACAA-GAAGAACTATTCAAAGAA  98
      ||| |||||||||| ||||||||| |||||| ||||||||||||||||||
seq2  TCAGGGGGTGAAAT-AACCAAGTGAAAACAAGGAAGAACTATTCAAAGAA  99

seq1  TTAACCAAACG-AGGAG-TTGGTTCTTTGAGAAAATCAA-CAAGATAGAT  145
       ||| |||||| ||||| ||| ||||||| ||||||||| | ||||||||
seq2  -TAAACAAACGAAGGAGTTTGTTTCTTTG-GAAAATCAACCGAGATAGAT  147

seq1  AAACCCTTAGCTAGACTC-ACT-AAAGGGCACAGGGACAAAATCCTAATT  193
      |||||||||||||||||| ||| ||||| |||||||||||||||||||| 
seq2  AAACCCTTAGCTAGACTCAACTAAAAGGACACAGGGACAAAATCCTAATC  197

seq1  AACAAAATCAG-AAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  242
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCAGAAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAA  247

seq1  TCCAAAACA-CCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACT  291
      ||||||||| ||||||||||||||||||||||  ||||||||||||||||
seq2  TCCAAAACACCCATCAGATCCTTCTACAAAAGCTTATACTCAACAAAACT  297

seq1  GGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAA  347

seq1  AGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAA  391
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCTCTAAA  397

seq1  GAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACC  447

seq1  AGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTC  497

seq1  CAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCC  541
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CAGTTCTGCACAAACTATTTCACAAGATAGAAGTAGAAGGTACTCTACCC  547

seq1  AA  543
      ||
seq2  AA  549