BAC Information

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BAC

Clone NameB6Ng01-034C11
Chromosome6 (Build37)
Map Location 72,662,351 - 72,838,003
singlet/doubletdoublet
Overlap geneTcf3, Kcmf1
Upstream geneReep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890
Downstream geneTmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C11.bB6Ng01-034C11.g
ACCDH862994DH862995
length989988
definitionDH862994|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C11, 5' end.DH862995|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,662,351 - 72,663,334)(72,837,017 - 72,838,003)
sequence
gaattccagcgctgggaagggagtgacattcaccccctaaggcccatggg
ctagcgagtctagccaatcggtgagctcaaggtttggagagaccttgtct
caaaagagaaggcagaagccactggagaacacacctgatgccgaccccag
gtctacacacacactgtacatacactgcacaaaggaagtagaaaataaag
tagctagtcacccaatccatagatgaagaaaatgaacctcggagatgcca
aggattttctagaatgtctcagtgctggtaagtagtgggggaaacaactc
aaagctccgtgtgtgacctcaagattgactttgagaccccgacaatctca
ttcagcagtagaacagtggggagactttgggcgaatagagagaaaggctt
tagaaatttgtctctggactgtataaatgaaaagaggcttgcggttgttt
catctcgccataggtgactctgtcttagcactctgttgcatttatttgtt
tatctgctcatttagtgcgtgtgatgtgtattggtcacacatgccataga
gcacacatggaggtcagagaacaacttgtgagagttgacagcaggcatct
ttacccgatgagccatttccgtcagctggtgactctattttaaatgccca
ggctttaaccaagccagaattttaggacctagggtcatgggatttgcaat
cgccaagtttgttaagagcggtattaattcaagtgtggccaaggatttct
gttcatagacctcttcaatacattttctttcatttttatttccctaagga
tatgggcattttataaagtgcgcattcgttttaagggatcaggagatggc
ttcatgagtaattgcacttgccatgtacgtcagacacctgatgcttcctc
aaaacccttgtaaagcctgggcacagtactgcagacacttggatctcagt
gcgcacttacaaggaaatggaggagagaagggggggact
gaattcagaagaagataagttgtttctaatggaagctgagttttcagcct
tgagattaagatgacctctctaggcttagtaatttattataagtggtatt
atcattattattgatttggtttcttttgagacagagtctctctatgtaaa
ctaaacctagctgttctggttctctatatagaccaggttagaccaggtta
gcttacagagatgcctatctctggctcccaagtgctgtctgtctgtctgt
gtgtttaatacttgctatcaattacagaccctgtcctaaaattcaggcct
tgaggatggagcacagtgatagaatgtatgccacgcagctcagaagacag
ttctcccctttcactgtgtgggtcctggggattgaacttgggcatctggc
ttggtgtcaggtgccttaacactggttgtatctgttagaaactcaagact
tgatgtttcctgcctgttttactgaagaaacctttctgctgagcagctgg
tatccccagattcatccttttcagttctgccccatcagatcactggaatg
acatgcagctattacatttgttgtcagtagtctaagttaggtggttttgt
tattgtttctttttctgcaccaccctttagctgggtactgcggccgccgc
cgccaccaaccaccccacccccaggatttctctgttctagaactccctct
gtagaccagctgtccttgaactgcctctgcctcctgagtgctgggattaa
aggtgtgcgccaccaccacattgttagttggatactctttccccagtggt
cttttaagtgtggtcccaggtactactaatatgggcatcactaagtgggt
gtggtcgcctaaaatacaccctcaggactcatgtaatagctagacatagt
gtggtgcacgcctttaatcctagcacttggaaagcagaggcaagcctgat
ctacagagtttgaggccagcctggtctacatattttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72662351_72663334
seq2: B6Ng01-034C11.b_46_1034

seq1  GAATTCCAGCGCTGGGAAGGGAGTGACATTCACCCCCTAAGGCCCATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGCTGGGAAGGGAGTGACATTCACCCCCTAAGGCCCATGGG  50

seq1  CTAGCGAGTCTAGCCAATCGGTGAGCTCAAGGTTTGGAGAGACCTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGAGTCTAGCCAATCGGTGAGCTCAAGGTTTGGAGAGACCTTGTCT  100

seq1  CAAAAGAGAAGGCAGAAGCCACTGGAGAACACACCTGATGCCGACCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGAAGGCAGAAGCCACTGGAGAACACACCTGATGCCGACCCCAG  150

seq1  GTCTACACACACACTGTACATACACTGCACAAAGGAAGTAGAAAATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACACACACTGTACATACACTGCACAAAGGAAGTAGAAAATAAAG  200

seq1  TAGCTAGTCACCCAATCCATAGATGAAGAAAATGAACCTCGGAGATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTCACCCAATCCATAGATGAAGAAAATGAACCTCGGAGATGCCA  250

seq1  AGGATTTTCTAGAATGTCTCAGTGCTGGTAAGTAGTGGGGGAAACAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCTAGAATGTCTCAGTGCTGGTAAGTAGTGGGGGAAACAACTC  300

seq1  AAAGCTCCGTGTGTGACCTCAAGATTGACTTTGAGACCCCGACAATCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCCGTGTGTGACCTCAAGATTGACTTTGAGACCCCGACAATCTCA  350

seq1  TTCAGCAGTAGAACAGTGGGGAGACTTTGGGCGAATAGAGAGAAAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGTAGAACAGTGGGGAGACTTTGGGCGAATAGAGAGAAAGGCTT  400

seq1  TAGAAATTTGTCTCTGGACTGTATAAATGAAAAGAGGCTTGCGGTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTGTCTCTGGACTGTATAAATGAAAAGAGGCTTGCGGTTGTTT  450

seq1  CATCTCGCCATAGGTGACTCTGTCTTAGCACTCTGTTGCATTTATTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCGCCATAGGTGACTCTGTCTTAGCACTCTGTTGCATTTATTTGTT  500

seq1  TATCTGCTCATTTAGTGCGTGTGATGTGTATTGGTCACACATGCCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTCATTTAGTGCGTGTGATGTGTATTGGTCACACATGCCATAGA  550

seq1  GCACACATGGAGGTCAGAGAACAACTTGTGAGAGTTGACAGCAGGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATGGAGGTCAGAGAACAACTTGTGAGAGTTGACAGCAGGCATCT  600

seq1  TTACCCGATGAGCCATTTCCGTCAGCTGGTGACTCTATTTTAAATGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGATGAGCCATTTCCGTCAGCTGGTGACTCTATTTTAAATGCCCA  650

seq1  GGCTTTAACCAAGCCAGAATTTTAGGACCTAGGGTCATGGGA-TTGCAAT  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTTTAACCAAGCCAGAATTTTAGGACCTAGGGTCATGGGATTTGCAAT  700

seq1  CGCCAAGTTTGTTAAGAGCGGTATT-ATTCAAGTGTGGCCAAGGATTTCT  748
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGCCAAGTTTGTTAAGAGCGGTATTAATTCAAGTGTGGCCAAGGATTTCT  750

seq1  GTTCATAGACCTCTTCAATACATTTTC-TTCATTTTTATTT-CCTAA-GA  795
      ||||||||||||||||||||||||||| ||||||||||||| ||||| ||
seq2  GTTCATAGACCTCTTCAATACATTTTCTTTCATTTTTATTTCCCTAAGGA  800

seq1  TAT-GGCA-TATATAAAGTGCGCATTCGTTTTAAGGGATCAGGAGATGGC  843
      ||| |||| | |||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCATTTTATAAAGTGCGCATTCGTTTTAAGGGATCAGGAGATGGC  850

seq1  TCAGTGAGTAAGTGCACTTGCCATGTACGTCAGACAACCTGATGC-TCCT  892
      |   ||||||| ||||||||||||||||||||||| ||||||||| ||||
seq2  TTCATGAGTAATTGCACTTGCCATGTACGTCAGAC-ACCTGATGCTTCCT  899

seq1  CAGAACCCTTGTAAAAGCCT-GGCACAGTACTGCAGACACCTGGAATCCC  941
      || ||||||||| ||||||| ||||||||||||||||||| ||| ||| |
seq2  CAAAACCCTTGT-AAAGCCTGGGCACAGTACTGCAGACACTTGG-ATCTC  947

seq1  AGTGCGCACCTACAAGGAGATGGGAGGTAGAG-AGGGGGGGACT  984
      ||||||||| |||||||| || ||||| |||| |||||||||||
seq2  AGTGCGCACTTACAAGGAAAT-GGAGG-AGAGAAGGGGGGGACT  989

seq1: chr6_72837017_72838003
seq2: B6Ng01-034C11.g_71_1058 (reverse)

seq1  ACAAACTATGTTGACCAGGCTGGCCTCAAACTCTGTAGATCA-GCCTGCC  49
      ||||| ||||| |||||||||||||||||||||||||||||| || ||||
seq2  ACAAAATATGTAGACCAGGCTGGCCTCAAACTCTGTAGATCAGGCTTGCC  50

seq1  TCTGCTTTCCAAGTGCTAGGATTAAAGGCGTGCACCACACTATGTCTAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCCAAGTGCTAGGATTAAAGGCGTGCACCACACTATGTCTAGC  100

seq1  TTAATTACATGAGTCCTGAGGGTGTATTTTTAGGCGA-CACACCCACTTA  148
      |  ||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  T--ATTACATGAGTCCTGAGGGTGTA-TTTTAGGCGACCACACCCACTTA  147

seq1  GTGATGCCCATATTAGTAGTA-CTTGGACCACACTTAAAAGACCACTGGG  197
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  GTGATGCCCATATTAGTAGTACCTGGGACCACACTTAAAAGACCACTGGG  197

seq1  G-AAGAGTATCCAACTAACAATGTGGTGGTGGCGCACACCTTTAATCCCA  246
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTATCCAACTAACAATGTGGTGGTGGCGCACACCTTTAATCCCA  247

seq1  GCACTCAGGAGGCAGAGGCAGTTCAAGGACAGCTGGTCTACAGAGGGAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAGGCAGAGGCAGTTCAAGGACAGCTGGTCTACAGAGGGAGT  297

seq1  TCTAGAACAGAGAAATCCTGGGGGTGGGGTGGTTGGTGGCGGCGGCGGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACAGAGAAATCCTGGGGGTGGGGTGGTTGGTGGCGGCGGCGGCC  347

seq1  GCAGTACCCAGCTAAAGGGTGGTGCAGAAAAAGAAACAATAACAAAACCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACCCAGCTAAAGGGTGGTGCAGAAAAAGAAACAATAACAAAACCA  397

seq1  CCTAACTTAGACTACTGACAACAAATGTAATAGCTGCATGTCATTCCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTAGACTACTGACAACAAATGTAATAGCTGCATGTCATTCCAGT  447

seq1  GATCTGATGGGGCAGAACTGAAAAGGATGAATCTGGGGATACCAGCTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATGGGGCAGAACTGAAAAGGATGAATCTGGGGATACCAGCTGCT  497

seq1  CAGCAGAAAGGTTTCTTCAGTAAAACAGGCAGGAAACATCAAGTCTTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAAGGTTTCTTCAGTAAAACAGGCAGGAAACATCAAGTCTTGAG  547

seq1  TTTCTAACAGATACAACCAGTGTTAAGGCACCTGACACCAAGCCAGATGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACAGATACAACCAGTGTTAAGGCACCTGACACCAAGCCAGATGC  597

seq1  CCAAGTTCAATCCCCAGGACCCACACAGTGAAAGGGGAGAACTGTCTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCAATCCCCAGGACCCACACAGTGAAAGGGGAGAACTGTCTTCT  647

seq1  GAGCTGCGTGGCATACATTCTATCACTGTGCTCCATCCTCAAGGCCTGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCGTGGCATACATTCTATCACTGTGCTCCATCCTCAAGGCCTGAA  697

seq1  TTTTAGGACAGGGTCTGTAATTGATAGCAAGTATTAAACACACAGACAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGACAGGGTCTGTAATTGATAGCAAGTATTAAACACACAGACAGA  747

seq1  CAGACAGCACTTGGGAGCCAGAGATAGGCATCTCTGTAAGCTAACCTGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCACTTGGGAGCCAGAGATAGGCATCTCTGTAAGCTAACCTGGT  797

seq1  CTAACCTGGTCTATATAGAGAACCAGAACAGCTAGGTTTAGTTTACATAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGGTCTATATAGAGAACCAGAACAGCTAGGTTTAGTTTACATAG  847

seq1  AGAGACTCTGTCTCAAAAGAAACCAAATCAATAATAATGATAATACCACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTGTCTCAAAAGAAACCAAATCAATAATAATGATAATACCACT  897

seq1  TATAATAAATTACTAAGCCTAGAGAGGTCATCTTAATCTCAAGGCTGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATTACTAAGCCTAGAGAGGTCATCTTAATCTCAAGGCTGAAA  947

seq1  ACTCAGCTTCCATTAGAAACAACTTATCTTCTTCTGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTCCATTAGAAACAACTTATCTTCTTCTGAATTC  988