BAC Information

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BAC

Clone NameB6Ng01-034F19
Chromosome6 (Build37)
Map Location 117,543,656 - 117,734,900
singlet/doubletdoublet
Overlap geneEG640370
Upstream geneZfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034F19.bB6Ng01-034F19.g
ACCDH863138DH863139
length971365
definitionDH863138|Mus musculus domesticus DNA, BAC clone: B6Ng01-034F19, 5' end.DH863139|Mus musculus domesticus DNA, BAC clone: B6Ng01-034F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,543,656 - 117,544,336)(117,734,529 - 117,734,900)
sequence
gaattcttcagcaaataatgaacatttcacttagcaacctgcggaagctt
ctataaaatagatcacatcctcaaacaaaataaatcttaataagttgaaa
taattccatgtatcctatctgaccacaatataataaagcatataatcaat
agcaagtggttatgtactaattacacaaactcatggagattaaataacaa
actactgaatgatgaatgagtcaatgaaggaaccaagaaaaattaaaact
aactaaataaaagtcctggcactaaatgaaaatgaaaacacagctcaaca
aacccttgggacacataaaacatttcccaagagggaaattcatagaccaa
agacactatatttaaaaaaaaaaaaagcacaaataaatgacttaatggta
caattgaagagtttggaaaaacaagaacaagccaacccaaatccagcaga
cagcaaggaacaataaaaatcagagaagaaaaatgagttagaaggaaaga
aaacaacacgaagaaccaataaagctaagcctggttccttaagaagataa
acaagatgaacaaactcttggcttaattaagcgaaagaaagaaagagatg
acaccaattagcagaatcagagatgaacagggaaatgttacaacagacat
caaagaaattacagttaacatatgagaatacttcaaaaaccattacgctt
ttgaagttagaaattttaagctagaaaatttgaaagggatggataaatgt
ctagatgcatccaaattataaagatgaagagctataggcaataaatcact
catgacagagctattaggcaattaatcactcatgacagagggagaatcca
gtctttttcaagaccagattcccaaagttacagctctaacacagacactt
atgagcacactggtaccacctcaccaggttaatgtgtggtgtggtgcatg
ttggggggttggggtgtgtgt
aacataattggaaactcatgtatggaggtaacattgtgagaagccatgag
tttagctgtagtcccccaagcctaccagcatgagtggctctctctgctga
gttctcattagcctttatctacagggaggacctgaaggaagacccaggct
ccctaagccatctagttttctattgttgcaacaatgaatccaaggcttgg
ccatttataaagaaaaggggttatactgggtggtgatggtggtgcaccca
ttaatcctagcacttgggaaggagaggcaggcagatctctgagttcaaag
ccagcctgttctacagagtgagtttcaggacatccagggctgcacaggaa
taccttgtcttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117543656_117544336
seq2: B6Ng01-034F19.b_322_1014

seq1  AAAATGAAAACACAGCTCAACAAACCCTTGGGACACATAAAACATTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAACACAGCTCAACAAACCCTTGGGACACATAAAACATTTCCC  50

seq1  AAGAGGGAAATTCATAGACCAAAGACACTATATTTAAAAAAAAAAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAAATTCATAGACCAAAGACACTATATTTAAAAAAAAAAAAAGC  100

seq1  ACAAATAAATGACTTAATGGTACAATTGAAGAGTTTGGAAAAACAAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAATGACTTAATGGTACAATTGAAGAGTTTGGAAAAACAAGAAC  150

seq1  AAGCCAACCCAAATCCAGCAGACAGCAAGGAACAATAAAAATCAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACCCAAATCCAGCAGACAGCAAGGAACAATAAAAATCAGAGAAG  200

seq1  AAAAATGAGTTAGAAGGAAAGAAAACAACACGAAGAACCAATAAAGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGTTAGAAGGAAAGAAAACAACACGAAGAACCAATAAAGCTAA  250

seq1  GCCTGGTTCCTTAAGAAGATAAACAAGATGAACAAACTCTTGGCTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTCCTTAAGAAGATAAACAAGATGAACAAACTCTTGGCTTAATT  300

seq1  AAGCGAAAGAAAGAAAGAGATGACACCAATTAGCAGAATCAGAGATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAAGAAAGAAAGAGATGACACCAATTAGCAGAATCAGAGATGAAC  350

seq1  AGGGAAATGTTACAACAGACATCAAAGAAATTACAGTTAACATATGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGTTACAACAGACATCAAAGAAATTACAGTTAACATATGAGAA  400

seq1  TACTTCAAAAACCATTACGCTTTTGAAGTTAGAAATTTTAAGCTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAAACCATTACGCTTTTGAAGTTAGAAATTTTAAGCTAGAAAA  450

seq1  TTTGAAAGGGATGGATAAATGTCTAGATGCATCCAAATTATAAAGATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGGGATGGATAAATGTCTAGATGCATCCAAATTATAAAGATGAA  500

seq1  GAGCTATAGGCAATTAATCACTCATGACAGAGCTA-TAGGCAATTAATCA  549
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  GAGCTATAGGCAATAAATCACTCATGACAGAGCTATTAGGCAATTAATCA  550

seq1  CTCATGACAGAGGGAGAA-CCAGTCTTCTCCAAGACCAAGATCCCCAAAG  598
      |||||||||||||||||| |||||||| | ||||||| |||| |||||||
seq2  CTCATGACAGAGGGAGAATCCAGTCTTTTTCAAGACC-AGATTCCCAAAG  599

seq1  TCACAAGCTCTAAACACAGACACATATGAGCAACACT-GTACCACCTCAC  647
      | || |||||| ||||||||||| ||||||| ||||| ||||||||||||
seq2  TTAC-AGCTCT-AACACAGACACTTATGAGC-ACACTGGTACCACCTCAC  646

seq1  CAGGTTAAATGTGT-GTGT-GTGCATGT------------GTGTGTGT  681
      |||||| ||||||| |||| ||||||||            ||||||||
seq2  CAGGTT-AATGTGTGGTGTGGTGCATGTTGGGGGGTTGGGGTGTGTGT  693

seq1: chr6_117734529_117734900
seq2: B6Ng01-034F19.g_70_440 (reverse)

seq1  TTTCAAGACAAGGTATTCCTGTGCAGCCCTGGATGTCCTGAAACTCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACAAGGTATTCCTGTGCAGCCCTGGATGTCCTGAAACTCACTC  50

seq1  TGTAGACCAGGCTGGCTTTGAACTCAGAGATCTGCCTGCCTCTCCTTCCC  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACAGGCTGGCTTTGAACTCAGAGATCTGCCTGCCTCTCCTTCCC  100

seq1  AAGTGCTAGGATTAATGGGTGCACCACCATCACCACCCAGTATAACCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAGGATTAATGGGTGCACCACCATCACCACCCAGTATAACCCCT  150

seq1  TTTCTTTATAAATGGCCAAGCCTTGGATTCATTGTTGCAACAATAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATAAATGGCCAAGCCTTGGATTCATTGTTGCAACAATAGAAAA  200

seq1  CTAGATGGCTTAGGGAGCCTGGGTCTTCCTTCAGGTCCTCCCTGTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGCTTAGGGAGCCTGGGTCTTCCTTCAGGTCCTCCCTGTAGATA  250

seq1  AAGGCTAATGAGAACTCAGCAGAGAGAGCCACTCATGCTGGTAGGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAATGAGAACTCAGCAGAGAGAGCCACTCATGCTGGTAGGCTTGG  300

seq1  GGGACTACAGCTAAACTCATGGCTTCTCACAATGTTACCTCCATACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTACAGCTAAACTCATGGCTTCTCACAATGTTACCTCCATACATGA  350

seq1  GTTTCCAATTCTATGTGAATTC  372
      |||||||||| | | |||||||
seq2  GTTTCCAATTATGT-TGAATTC  371