BAC Information

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BAC

Clone NameB6Ng01-034H01
Chromosome6 (Build37)
Map Location 113,273,701 - 113,438,394
singlet/doubletdoublet
Overlap geneBrpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1
Upstream geneLmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9
Downstream genePrrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034H01.bB6Ng01-034H01.g
ACCDH863196DH863197
length1,089726
definitionDH863196|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H01, 5' end.DH863197|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,437,295 - 113,438,394)(113,273,701 - 113,274,423)
sequence
gaattcagctcaacttgggcatgtgtcctgggaaccccttgaccaaggaa
ggccctttgggcagaggagtaaagaggctcagtgtgagggcctggtaccc
aggggcaactcctcagatctggattgggaaggctccaaaccaagctgcca
tgcaactgcttcttggccaagtcaaagccacatcaccggggcatatctgt
aacccctcccactcctcacctgtgaaaccaccagttttccaccagctcct
cgctcagctcgagcaggcggtggcactcgaagtctgacctgctgcacacg
ccctccagcacctccaccaggcgggtctcactgagtacacaggacagggt
gataagaacatggtctgcccaccggctcctcaggtcgctctccaccccct
gacccccatacgtgacactaccaaggaagggccatggagcattagtgaca
gccaggctaatggctctggaaatcagacagacctaggtccgagacgaggc
tgtctgtgtgatttgggcacgtcatgaagtcttgttttcgtttctcaccc
ctgaccccttggttgtaatcaggttctcactacttcaacaaggatggcct
agaactctcctactgctacatcccactgtgcaccaccatgttgggcacac
ttctgtgttttccttctgtcaagcagaaacagttaacacttctgcaggtg
aatcctgagtcctcagtttctgcatctgacctgggctagcaagggatggt
cgcgcttgagaagacaggactgaaatcacaccactgggctggaaggggta
gctcagaggttgaaaaaggatccccacaccccctgcaaatattttgatct
ttcaagtgcaggcaaggatgtagaaaaaccagattcccgactgcacctgc
atgggagatggtgcatcgctcctaggagccaccatgactcagcatccttc
tctggcacgaggccaaacaatgggaaacatgtgttcaaccctgcaacaat
gcctcacagtcgcaagttcctaacaagctaaaggtcaccacaactcacct
gttcgtttacccactgagaaatagtagcaggcctttcaa
gaattcctttagctaacttctacttcatgtaactcagtatttcctaagca
agtcttttagtaaatccttgtagaatcaatgttattgcctcaagcatctc
ctgattcatttactccccctgatctgctgcctgggctgttcttctcaata
caatacacagtcccttgatagcagggatgctaggagtaggcattcctaac
agcacggggttcaaaagggcgagcactcttctacctgaaatcatgcctca
tctcatcttcttaccttctctgacaggcagtggctgccccggactaagct
tgttcctctgggtgtgaaccaggatctagacaaagagaagatgctggagg
gccgcaagtccaacatccgcaagtcagtgcagattgcttaccacagggct
ctgcagcaccgaagcaaggtgcagggtgagcagagcagcgagaccagcga
tagtgactgatactctcagagcccggtggtgctgtgatggctctccttcc
ctttgctcattgtcctggagtgatgccgccctctgcactgattaattcct
ggtcttggggccagtctcaggggaagttgggtaggggaggtccctcctgc
cctgagtgcagctggactgtacaaaaacactccaagggcccatggccact
cagtgcaaggagaggagaggtctcagaggtctaacgagttcaaaaaactc
atggcatttgtagggcagggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113437295_113438394
seq2: B6Ng01-034H01.b_45_1133 (reverse)

seq1  TTGAATGGGCCTGCTACTTTTTCTTTCGTTGGTTAACGGGACAGTTGAGT  50
      |||||  ||||||||||| ||||  ||  ||| |||  | |||| |||||
seq2  TTGAA-AGGCCTGCTACTATTTC--TCAGTGGGTAAACGAACAGGTGAGT  47

seq1  TGTTGTCTGCCCTTT-GCTTGTTATGAACTTTGCGACTGTGAGCATTTGT  99
      ||| |  || ||||| |||||||| |||| |||||||||||||   ||||
seq2  TGTGG--TGACCTTTAGCTTGTTAGGAAC-TTGCGACTGTGAGGCATTGT  94

seq1  GTGCAAGGGTTGAACACCTGTTTCCCATTTGTTTGGCCTCTGTGCCCAGG  149
       ||| |||||||||||| ||||||||| |||||||||||| |||||   |
seq2  -TGC-AGGGTTGAACACATGTTTCCCA-TTGTTTGGCCTC-GTGCC--AG  138

seq1  AGAGGAATTGCTGAGTCATGGTGGCTCCTTAGAGCTGATTGCACCATCTC  199
      ||| | | |||||||||||||||||||||  |||| || |||||||||||
seq2  AGAAGGA-TGCTGAGTCATGGTGGCTCCTAGGAGC-GA-TGCACCATCTC  185

seq1  CCATGCA-GTGCAGTCGGGAATCTGGTTTTTCTACATCCCTTGCCTGCAC  248
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  CCATGCAGGTGCAGTCGGGAATCTGGTTTTTCTACAT-CCTTGCCTGCAC  234

seq1  TTGAAAGATC-ATATATTTGCAGGGGGTGTGGGGATCCTTTTTCAACCTC  297
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGATCAAAATATTTGCAGGGGGTGTGGGGATCCTTTTTCAACCTC  284

seq1  TGAGCTACCCCTTCCAGCCCAGTGGTGTGATTTCAGTCCTGTCTTCTC-A  346
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAGCTACCCCTTCCAGCCCAGTGGTGTGATTTCAGTCCTGTCTTCTCAA  334

seq1  GCGCGACCATCCC-TGCTAGCCCAGGTCAGATGCAGGAACTGAGGACTCA  395
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  GCGCGACCATCCCTTGCTAGCCCAGGTCAGATGCAGAAACTGAGGACTCA  384

seq1  GGATTCACCTGCAGAAGTGTTAACTGTTTCTGCTTGACAGAAGGAAAACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCACCTGCAGAAGTGTTAACTGTTTCTGCTTGACAGAAGGAAAACA  434

seq1  CAGAAGTGTGCCCAACATGGTGGTGCACAGTGGGATGTAGCAGTAGGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGTGCCCAACATGGTGGTGCACAGTGGGATGTAGCAGTAGGAGA  484

seq1  GTTCTAGGCCATCCTTGTTGAAGTAGTGAGAACCTGATTACAACCAAGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGCCATCCTTGTTGAAGTAGTGAGAACCTGATTACAACCAAGGG  534

seq1  GTCAGGGGTGAGAAACGAAAACAAGACTTCATGACGTGCCCAAATCACAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGTGAGAAACGAAAACAAGACTTCATGACGTGCCCAAATCACAC  584

seq1  AGACAGCCTCGTCTCGGACCTAGGTCTGTCTGATTTCCAGAGCCATTAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCTCGTCTCGGACCTAGGTCTGTCTGATTTCCAGAGCCATTAGC  634

seq1  CTGGCTGTCACTAATGCTCCATGGCCCTTCCTTGGTAGTGTCACGTATGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCACTAATGCTCCATGGCCCTTCCTTGGTAGTGTCACGTATGG  684

seq1  GGGTCAGGGGGTGGAGAGCGACCTGAGGAGCCGGTGGGCAGACCATGTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGGGGTGGAGAGCGACCTGAGGAGCCGGTGGGCAGACCATGTTC  734

seq1  TTATCACCCTGTCCTGTGTACTCAGTGAGACCCGCCTGGTGGAGGTGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACCCTGTCCTGTGTACTCAGTGAGACCCGCCTGGTGGAGGTGCTG  784

seq1  GAGGGCGTGTGCAGCAGGTCAGACTTCGAGTGCCACCGCCTGCTCGAGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGTGTGCAGCAGGTCAGACTTCGAGTGCCACCGCCTGCTCGAGCT  834

seq1  GAGCGAGGAGCTGGTGGAAAACTGGTGGTTTCACAGGTGAGGAGTGGGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGGAGCTGGTGGAAAACTGGTGGTTTCACAGGTGAGGAGTGGGAG  884

seq1  GGGTTACAGATATGCCCCGGTGATGTGGCTTTGACTTGGCCAAGAAGCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACAGATATGCCCCGGTGATGTGGCTTTGACTTGGCCAAGAAGCAG  934

seq1  TTGCATGGCAGCTTGGTTTGGAGCCTTCCCAATCCAGATCTGAGGAGTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGCAGCTTGGTTTGGAGCCTTCCCAATCCAGATCTGAGGAGTTG  984

seq1  CCCCTGGGTACCAGGCCCTCACACTGAGCCTCTTTACTCCTCTGCCCAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGTACCAGGCCCTCACACTGAGCCTCTTTACTCCTCTGCCCAAA  1034

seq1  GGGCCTTCCTTGGTCAAGGGGTTCCCAGGACACATGCCCAAGTTGAGCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTCCTTGGTCAAGGGGTTCCCAGGACACATGCCCAAGTTGAGCTG  1084

seq1  AATTC  1100
      |||||
seq2  AATTC  1089

seq1: chr6_113273701_113274423
seq2: B6Ng01-034H01.g_67_792

seq1  GAATTCCTTTAGCTAACTTCTACTTCATGTAACTCAGTATTTCCTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAGCTAACTTCTACTTCATGTAACTCAGTATTTCCTAAGCA  50

seq1  AGTCTTTTAGTAAATCCTTGTAGAATCAATGTTATTGCCTCAAGCATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTAGTAAATCCTTGTAGAATCAATGTTATTGCCTCAAGCATCTC  100

seq1  CTGATTCATTTACTCCCCCTGATCTGCTGCCTGGGCTGTTCTTCTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCATTTACTCCCCCTGATCTGCTGCCTGGGCTGTTCTTCTCAATA  150

seq1  CAATACACAGTCCCTTGATAGCAGGGATGCTAGGAGTAGGCATTCCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACAGTCCCTTGATAGCAGGGATGCTAGGAGTAGGCATTCCTAAC  200

seq1  AGCACGGGGTTCAAAAGGGCGAGCACTCTTCTACCTGAAATCATGCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGGGTTCAAAAGGGCGAGCACTCTTCTACCTGAAATCATGCCTCA  250

seq1  TCTCATCTTCTTACCTTCTCTGACAGGCAGTGGCTGCCCCGGACTAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTCTTACCTTCTCTGACAGGCAGTGGCTGCCCCGGACTAAGCT  300

seq1  TGTTCCTCTGGGTGTGAACCAGGATCTAGACAAAGAGAAGATGCTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTGGGTGTGAACCAGGATCTAGACAAAGAGAAGATGCTGGAGG  350

seq1  GCCGCAAGTCCAACATCCGCAAGTCAGTGCAGATTGCTTACCACAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAAGTCCAACATCCGCAAGTCAGTGCAGATTGCTTACCACAGGGCT  400

seq1  CTGCAGCACCGAAGCAAGGTGCAGGGTGAGCAGAGCAGCGAGACCAGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACCGAAGCAAGGTGCAGGGTGAGCAGAGCAGCGAGACCAGCGA  450

seq1  TAGTGACTGATACTCTCAGAGCCCGGTGGTGCTGTGATGGCTCTCCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTGATACTCTCAGAGCCCGGTGGTGCTGTGATGGCTCTCCTTCC  500

seq1  CTTTGCTCATTGTCCTGGAGTGATGCCGCCCTCTGCACTGATTAATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCATTGTCCTGGAGTGATGCCGCCCTCTGCACTGATTAATTCCT  550

seq1  GGTCTTGGGGCCAGTCTCAGGGGAAGTTGGGTAGGGGAGGTCCCTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGGCCAGTCTCAGGGGAAGTTGGGTAGGGGAGGTCCCTCCTGC  600

seq1  CCTGAGTGCAGCTGGACTGTAC-AAAACACTCCAAGGGCCCATGGCCACT  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTGAGTGCAGCTGGACTGTACAAAAACACTCCAAGGGCCCATGGCCACT  650

seq1  CAGTGCAAGGAGAGGAGAGGTCTCAGAGGTCTAACGAGTTC-AAAAACTC  698
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTGCAAGGAGAGGAGAGGTCTCAGAGGTCTAACGAGTTCAAAAAACTC  700

seq1  ATGGCA-TTGTAGGGCAGGGTGGTGG  723
      |||||| |||||||||||||||||||
seq2  ATGGCATTTGTAGGGCAGGGTGGTGG  726