BAC Information

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BAC

Clone NameB6Ng01-034J01
Chromosome6 (Build37)
Map Location 45,923,647 - 46,058,342
singlet/doubletdoublet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J01.bB6Ng01-034J01.g
ACCDH863280DH863281
length992528
definitionDH863280|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J01, 5' end.DH863281|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,923,647 - 45,924,644)(46,057,810 - 46,058,342)
sequence
gaattctttgtttagctctgtacaccatttttttaatagggttatttggt
tttctggagtccagcttcttttgttctttatatatattggatattatccc
cctatccgtttaggattggtaatgatcttttcccaatctgtaagcactac
atcaagtccacaatctcttcctgttctccaaaggaaaacagcttttccat
gtgcatggttgaagtccaaatatgagggtttcaatgttaggctgaaacga
actttctctgtagctgctcactatgagccattgatgattcccctccctgt
tgctataagaaatggttcttcacatataatttccatttcaacttctgctt
cttctggcttccctgcctcttcagcatcttacaacagttctgatcagttc
accattagaagttcagtgttctaccaccccatttcattgtgtctacatcc
caagcttctacctcactctacccaaatctatgactgttctccttataaac
ttattgttctctacgtaaagccttgtagaaggttcccacaactaatttga
aagaactaggaaaaaccaaaacagaacattttttctgtattatttactcg
gatgtctgagcccacagtttttccattaacttgatttgactaatatgttc
ctaactaaagtttcacatttgtgattgagacatgtttattcatcttaaac
tctttcaaatctcagcatatttagtacaaaatataaaaatcataatgctg
acagttataaaacctaggggtaggggtgtgtttacaaattttgataattt
aaagtgaccaaaataaaaggagaaacacagaacttgtgggttcaaaacca
gaggttctgatgggtgaatcttgtacctcagaatactgatatgctatagg
agatgaatggtgatgtgtagtataaatcccaaaggagggtttgatttatt
ctgggacagtcagatcaatgccagctcactctgcgcaccagg
atgcatgaacaaacagcaagttaatgagatagagaaatatccatgaagaa
agtttaatataagaaactaggaacatgatgcagcaggtacaaagtgatgc
tgaacatggataagataagctttttattgtatcaccaatctatgagaatt
gtctattttggaagacagcatcattctttgtaactagtgtcagtcaccta
taaaggcgatatccttgtcctttcagaaataaaatgcatctgctttctca
tataaagtagttttagggagctagggccatgccctgttgagtaagagtac
gaggatttgtgtggagatcctttgcaaccacagaaaatccatgaatagtt
acaaatgcctgtaatgtcagtttggggctagatcatcactgagaggaaga
tagctatgtcatgcttgaccaatgtccagcaaagaagtagcaagctacag
actttatgagagactgtcttatgtctcaaaagcaaacagttatatatgtg
ggcccctgaggtcctcatgtggcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45923647_45924644
seq2: B6Ng01-034J01.b_46_1037

seq1  GAATTCTTTGTTTAGCTCTGTACACCATTTTTTTAATAGGGTTATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACACCATTTTTTTAATAGGGTTATTTGGT  50

seq1  TTTCTGGAGTCCAGCTTCTTTTGTTCTTTATATATATTGGATATTATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGTCCAGCTTCTTTTGTTCTTTATATATATTGGATATTATCCC  100

seq1  CCTATCCGTTTAGGATTGGTAATGATCTTTTCCCAATCTGTAAGCACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCGTTTAGGATTGGTAATGATCTTTTCCCAATCTGTAAGCACTAC  150

seq1  ATCAAGTCCACAATCTCTTCCTGTTCTCCAAAGGAAAACAGCTTTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCCACAATCTCTTCCTGTTCTCCAAAGGAAAACAGCTTTTCCAT  200

seq1  GTGCATGGTTGAAGTCCAAATATGAGGGTTTCAATGTTAGGCTGAAACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGTTGAAGTCCAAATATGAGGGTTTCAATGTTAGGCTGAAACGA  250

seq1  ACTTTCTCTGTAGCTGCTCACTATGAGCCATTGATGATTCCCCTCCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTGTAGCTGCTCACTATGAGCCATTGATGATTCCCCTCCCTGT  300

seq1  TGCTATAAGAAATGGTTCTTCACATATAATTTCCATTTCAACTTCTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAGAAATGGTTCTTCACATATAATTTCCATTTCAACTTCTGCTT  350

seq1  CTTCTGGCTTCCCTGCCTCTTCAGCATCTTACAACAGTTCTGATCAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTTCCCTGCCTCTTCAGCATCTTACAACAGTTCTGATCAGTTC  400

seq1  ACCATTAGAAGTTCAGTGTTCTACCACCCCATTTCATTGTGTCTACATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGAAGTTCAGTGTTCTACCACCCCATTTCATTGTGTCTACATCC  450

seq1  CAAGCTTCTACCTCACTCTACCCAAATCTATGACTGTTCTCCTTATAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCTACCTCACTCTACCCAAATCTATGACTGTTCTCCTTATAAAC  500

seq1  TTATTGTTCTCTACGTAAAGCCTTGTAGAAGGTTCCCACAACTAATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTCTCTACGTAAAGCCTTGTAGAAGGTTCCCACAACTAATTTGA  550

seq1  AAGAACTAGGAAAAACCAAAACAGAACATTTTTTCTGTATTATTTACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAGGAAAAACCAAAACAGAACATTTTTTCTGTATTATTTACTCG  600

seq1  GATGTCTGAGCCCACAGTTTTTCCATTAACTTGATTTGACTAATATGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGAGCCCACAGTTTTTCCATTAACTTGATTTGACTAATATGTTC  650

seq1  CTAACTAAAGTTTCACATTTGTGATTGAGACATGTTTATTCATCTTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAAGTTTCACATTTGTGATTGAGACATGTTTATTCATCTTAAAC  700

seq1  TCTTTCAAATCTCAGCATATTTAGTTACAAAATATAAAAATCATAATGCT  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTTCAAATCTCAGCATATTTAG-TACAAAATATAAAAATCATAATGCT  749

seq1  GACAGTTAT-AAACCTAGGGGTTAGGGTGTGTTTAACAAATTTGATAATT  799
      ||||||||| ||||||||||||  |||||||||||  || ||||||||||
seq2  GACAGTTATAAAACCTAGGGGTAGGGGTGTGTTTACAAATTTTGATAATT  799

seq1  TAAAGTGA-CAAAATAAAAGGAG-AACACAGAACTTGT-GGTTCAAAACC  846
      |||||||| |||||||||||||| |||||||||||||| |||||||||||
seq2  TAAAGTGACCAAAATAAAAGGAGAAACACAGAACTTGTGGGTTCAAAACC  849

seq1  AGAGGTTCTGAT-GGTGAATTCTTGTACCTCAGTATACTGATATGCTATA  895
      |||||||||||| |||||| ||||||||||||| ||||||||||||||| 
seq2  AGAGGTTCTGATGGGTGAA-TCTTGTACCTCAGAATACTGATATGCTAT-  897

seq1  AGGAGATGAATGGTGATGTGTAGTATAAAATCCCAAAGGAGGGGTTTGAA  945
      |||||||||||||||||||||||||| ||||||||||||| ||||||| |
seq2  AGGAGATGAATGGTGATGTGTAGTAT-AAATCCCAAAGGA-GGGTTTG-A  944

seq1  TTTATTCTTGGGACAGTTCAGATCCAATGCCAGCTTCACTCTGCAGCACC  995
      ||||||| |||||||| |||||| |||||||||| ||||||||| |||||
seq2  TTTATTC-TGGGACAG-TCAGAT-CAATGCCAGC-TCACTCTGC-GCACC  989

seq1  AGG  998
      |||
seq2  AGG  992

seq1: chr6_46057810_46058342
seq2: B6Ng01-034J01.g_68_600 (reverse)

seq1  AAAGGCCACATGAGGACCTCAGGGGCCCACTTCTATCACTGTTTGCTTTT  50
      |||||||||||||||||||||||||||||| | ||| |||||||||||||
seq2  AAAGGCCACATGAGGACCTCAGGGGCCCACATATATAACTGTTTGCTTTT  50

seq1  GAGACATAAGACAGTCTCTCATAAAGTCTGTAGCTTGCTACTTCTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAAGACAGTCTCTCATAAAGTCTGTAGCTTGCTACTTCTTTGCT  100

seq1  GGACCTTGGTCAAGCATGACATAGCTATCTTCCTCTCAGTGATGATCTAG  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGGTCAAGCATGACATAGCTATCTTCCTCTCAGTGATGATCTAG  150

seq1  CCCCAAACTGACATTACAGGCATTTGTAACTATTCATGGATTTTCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACTGACATTACAGGCATTTGTAACTATTCATGGATTTTCTGTGG  200

seq1  TTGCAAAGGATCTCCACACAAATCCTCGTACTCTTACTCAACAGGGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGGATCTCCACACAAATCCTCGTACTCTTACTCAACAGGGCATG  250

seq1  GCCCTAGCTCCCTAAAACTACTTTATATGAGAAAGCAGATGCATTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCTCCCTAAAACTACTTTATATGAGAAAGCAGATGCATTTTATT  300

seq1  TCTGAAAGGACAAGGATATCGCCTTTATAGGTGACTGACACTAGTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGGACAAGGATATCGCCTTTATAGGTGACTGACACTAGTTACAA  350

seq1  AGAATGATGCTGTCTTCCAAAATAGACAATTCTCATAGATTGGTGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATGCTGTCTTCCAAAATAGACAATTCTCATAGATTGGTGATACA  400

seq1  ATAAAAAGCTTATCTTATCCATGTTCAGCATCACTTTGTACCTGCTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCTTATCTTATCCATGTTCAGCATCACTTTGTACCTGCTGCAT  450

seq1  CATGTTCCTAGTTTCTTATATTAAACTTTCTTCATGGATATTTCTCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCTAGTTTCTTATATTAAACTTTCTTCATGGATATTTCTCTATC  500

seq1  TCATTAACTTGCTGTTTGTTCATGCATGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  TCATTAACTTGCTGTTTGTTCATGCATGAATTC  533