BAC Information

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BAC

Clone NameB6Ng01-034O23
Chromosome6 (Build37)
Map Location 102,239,350 - 102,240,349
singlet/doubletsinglet
Overlap geneCntn3
Upstream genePdzrn3, EG666084, EG666123
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034O23.bB6Ng01-034O23.g
ACCDH863541DH863542
length1,003970
definitionDH863541|Mus musculus domesticus DNA, BAC clone: B6Ng01-034O23, 5' end.DH863542|Mus musculus domesticus DNA, BAC clone: B6Ng01-034O23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaacccaaaatcaccaccttcggattcattaaaggcaaggtttc
ccgtagttagtttgttctgaagaaaatttccattttgcaagggcagtgta
aattttgcatatcattttaatagcaaggtaggtcaatcagaatataattg
gctccaattaacactcctatgagctgtaaggttctttatatctcttagac
tgtacttaaagggaaaatgctatttaccaacactgagcccttaagaattg
tccactggttactgtgagtgaggagggaagttggactccagagacacagc
actttgggagatgtttaaggtgtgcacactaacaaacgtgtggtatcaag
catcaccatgtgaaaatttcctatgacaaagcattttctttgagctgtat
gggaaggctttgcctatgaaatatctaatctcctgcattagattggaact
aatcttaaagttgctttctaacatttttttcagggtctttaaactcctac
ataagaaaaatggggagagagtaaaagcgttttctgtcctttatactgtc
atggttacatatcaacttgattggtttctgcaacatctctctagaagtga
ttggaggcagaagaccaaacatgaaaatgggtagctcagatggactggga
tcacagaagagagaaaggaaaaagtcagatgatgtcaagcatccccctgt
cccgagttctgacatttccttgggacgtagcctgctgcctcacactcctc
ctctcatagcttctttgcaatgacagttttaaaaaaaatcttcctccctt
ttaattggtttaaccaagtatttcttacacagtttatgagaaaagaaaag
aatacagatcttttagctgctattcttagttctttatccagtctcaatta
tcatacctggattgtcccttttcatgtaaactgggggtttatggtccttg
aaaaatggtatctgtggcctttaacaaacttggtatatatgcataagttt
cat
gaattctgtgaactgtatgtagtgtatcctgtatgagttttttctttttt
tctttttccttttcctttacattttttttttttttttttgctaatatcca
cttattattgagtacataccatgcaagtccttttgggtctgagttacctc
actcaggatgatattttctagttccatccatttgcctacaaaagtcagga
tatccttgttcttaataggtgagtagtattcctttgtgtaaatgaacctc
attttctgtatccattcttctgttatgggacatctgggttgtttccagct
tcttgctatcacaaataaggccactatgaacataatggaacatgtgcccc
tgtggtatggtgggcatgttttgggtatattcccaatagtgatatagctg
ggttttaaggtatatctatttccaaatttctgaagaacctccagatcgac
tctcagagtgcttgtaccagtttgcaatgccaccagcaatggaagagtgt
tcctctttctccacatcctctccaacatgtgttgtcacctgacaatttga
tactagccattctaactggtataaggtggaatctcagggtcgttttgact
tgcagttctctgatcactaaggactttgaacatttcttaaggtgtttctc
agccattcaagattcctcggttgtgaattctcagtttagttctatacccc
atttattgattgggattatttggttttttggtgggttatcttcttgagtc
ttttatatattttagatattatccctctctcagatgaggggttagtgaag
attgtttccccaatcagtaaatagctgatttgtcttatcgactatgtcct
ttgcctacagaaagcttcaagttttatgaggtcccaattatcaatttttg
gatcatagagcttgagcattgaagttcttgtttaagatatttcccctgta
gtaaatgaatctcagggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102239350_102240349
seq2: B6Ng01-034O23.b_45_1047 (reverse)

seq1  ATGAAACTTATGCATATATAACAAG-TTGTTAAAGGCCACAGATAACATT  49
      |||||||||||||||||||| |||| ||||||||||||||||||| ||||
seq2  ATGAAACTTATGCATATATACCAAGTTTGTTAAAGGCCACAGATACCATT  50

seq1  TTTCAAGGACCAT-AATCCCCAGTTTACATGGAAAGGGAC-ATCCAGGTA  97
      ||||||||||||| || |||||||||||||| |||||||| |||||||||
seq2  TTTCAAGGACCATAAACCCCCAGTTTACATGAAAAGGGACAATCCAGGTA  100

seq1  TGATAATTGAGACTGGAATAAAGAACCTAAGAATAGCAGCTAAAAGATCT  147
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TGATAATTGAGACTGG-ATAAAGAA-CTAAGAATAGCAGCTAAAAGATCT  148

seq1  GTATTCTTTTCTTTTCTCAT-AACTGTGTAAGAAATACTTGGTTAAACCA  196
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTATTCTTTTCTTTTCTCATAAACTGTGTAAGAAATACTTGGTTAAACCA  198

seq1  ATT-AAAGGGAGGAAGATTTTTTTTAAAACTGTCATTGCAAAGAAGCTAT  245
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGGGAGGAAGATTTTTTTTAAAACTGTCATTGCAAAGAAGCTAT  248

seq1  GAGAGGAGGAGTGTGAGGCAGCAGGCTACGTCCCAAGGAAATGTCAGAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGAGTGTGAGGCAGCAGGCTACGTCCCAAGGAAATGTCAGAAC  298

seq1  TCGGGACAGGGGGATGCTTGACATCATCTGACTTTTTCCTTTCTCTCTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGACAGGGGGATGCTTGACATCATCTGACTTTTTCCTTTCTCTCTTC  348

seq1  TGTGATCCCAGTCCATCTGAGCTACCCATTTTCATGTTTGGTCTTCTGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCCAGTCCATCTGAGCTACCCATTTTCATGTTTGGTCTTCTGCC  398

seq1  TCCAATCACTTCTAGAGAGATGTTGCAGAAACCAATCAAGTTGATATGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCACTTCTAGAGAGATGTTGCAGAAACCAATCAAGTTGATATGTA  448

seq1  ACCATGACAGTATAAAGGACAGAAAACGCTTTTACTCTCTCCCCATTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACAGTATAAAGGACAGAAAACGCTTTTACTCTCTCCCCATTTTT  498

seq1  CTTATGTAGGAGTTTAAAGACCCTGAAAAAAATGTTAGAAAGCAACTTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAGGAGTTTAAAGACCCTGAAAAAAATGTTAGAAAGCAACTTTA  548

seq1  AGATTAGTTCCAATCTAATGCAGGAGATTAGATATTTCATAGGCAAAGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTTCCAATCTAATGCAGGAGATTAGATATTTCATAGGCAAAGCC  598

seq1  TTCCCATACAGCTCAAAGAAAATGCTTTGTCATAGGAAATTTTCACATGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATACAGCTCAAAGAAAATGCTTTGTCATAGGAAATTTTCACATGG  648

seq1  TGATGCTTGATACCACACGTTTGTTAGTGTGCACACCTTAAACATCTCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTGATACCACACGTTTGTTAGTGTGCACACCTTAAACATCTCCC  698

seq1  AAAGTGCTGTGTCTCTGGAGTCCAACTTCCCTCCTCACTCACAGTAACCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTGTGTCTCTGGAGTCCAACTTCCCTCCTCACTCACAGTAACCA  748

seq1  GTGGACAATTCTTAAGGGCTCAGTGTTGGTAAATAGCATTTTCCCTTTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAATTCTTAAGGGCTCAGTGTTGGTAAATAGCATTTTCCCTTTAA  798

seq1  GTACAGTCTAAGAGATATAAAGAACCTTACAGCTCATAGGAGTGTTAATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCTAAGAGATATAAAGAACCTTACAGCTCATAGGAGTGTTAATT  848

seq1  GGAGCCAATTATATTCTGATTGACCTACCTTGCTATTAAAATGATATGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAATTATATTCTGATTGACCTACCTTGCTATTAAAATGATATGCA  898

seq1  AAATTTACACTGCCCTTGCAAAATGGAAATTTTCTTCAGAACAAACTAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACACTGCCCTTGCAAAATGGAAATTTTCTTCAGAACAAACTAAC  948

seq1  TACGGGAAACCTTGCCTTTAATGAATCCGAAGGTGGTGATTTTGGGTTAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGAAACCTTGCCTTTAATGAATCCGAAGGTGGTGATTTTGGGTTAG  998

seq1  AATTC  1000
      |||||
seq2  AATTC  1003