BAC Information

Click to search

BAC

Clone NameB6Ng01-035C04
Chromosome6 (Build37)
Map Location 42,573,051 - 42,698,135
singlet/doubletdoublet
Overlap geneBC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453
Upstream geneTrpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2
Downstream geneOlfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C04.bB6Ng01-035C04.g
ACCDH863689DH863690
length694768
definitionDH863689|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C04, 5' end.DH863690|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,573,051 - 42,573,751)(42,697,355 - 42,698,135)
sequence
gaattctatacatgtatataaggtgctttgatcaaaaccatttcccatgt
cctcattcatcccctatccccacatatctatcccctcctaaattcatgtg
ttcatttcaaagcccatagtgctgcctatatgtgtgctggtgtacggcat
aggtagcctcttagggaccacaaagctgaagaaagccgactctcctccca
gcagccatagactgctaacagatctctaactagggatgggacttcataac
tcctcccccactcatgctttttcagactttgtctgagatcactattcttc
aatattttctcctaaataagatttgtaaatacagaactataaaattgtaa
gcagaaaaaaatgtttttacgtatacaagcataatctgtgggtattacag
ccacagaaaaatttaccaaaagcataaaaacaagaggcggagccagggtc
tctcctcaggaatgagaagaaccatcacagggctctacatcctacagaga
atgggtgtgtcaaggttaggacttggtttggtctcttagataacccatta
atccagcttattagctccctagtcacccccctccaatatattaagaatgc
cacagtttgggaatgacttcctggtttaatatttccaaggtgggttcctc
tcaggcagatgaatctgaggtaaggaaattatgcaaaagattaa
gaattcacactattgacaaggacatagtcatgtcaaggagaccaaggcct
tggactcatatcaatcagcaaagcccttttcccccatgagtcaggctcaa
aagaaatgccagaactgtccttggcattggagtatgagtgtttatggaca
gttaaccactatatgcaaactgacaactacagcttcctccctctgatgtt
tacctgcagataccttctctagaaaatagcttatccccatccccccaacc
cccatgtcatacctaataaacatgctgagcttccaggttgcaagtggtga
cagacctcaaccttagcattcctgtacatgtggctctcctattctcattt
cctggaagtcccagagggtcaaaggataggatgtaagagacaaaggcaag
agatagagagcaagggagaagggaaatggaacaagagagggaagaaggga
tattttccttgggagaataaatgactgtctctggatagagaagagacaga
cattgcccatagaaaaatggcagtttataaagagaaaaagagaaagtttg
tgttaggatgagttggtttcttttgatttaccctgttaataggataccca
aaaggaggcttttgatttctggacttcaatactttgaatagctggacctt
ggtagtcagcctcatgggaaaggagtagccagtagggaataaaccttagt
gactagcttacgaatgtaatctacagttagcagtaaaagaatgggaaggc
agcctgcaaaaacatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42573051_42573751
seq2: B6Ng01-035C04.b_45_738

seq1  GAATTCTATACATGTATATAAGGTGCTTTGATCAAAACCATTTCCCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACATGTATATAAGGTGCTTTGATCAAAACCATTTCCCATGT  50

seq1  CCTCATTCATCCCCTATCCCCACATATCTATCCCCTCCTAAATTCATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCATCCCCTATCCCCACATATCTATCCCCTCCTAAATTCATGTG  100

seq1  TTCATTTCAAAGCCCATAGTGCTGCCTATATGTGTGCTGGTGTACGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAAAGCCCATAGTGCTGCCTATATGTGTGCTGGTGTACGGCAT  150

seq1  AGGTAGCCTCTTAGGGACCACAAAGCTGAAGAAAGCCGACTCTCCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCTCTTAGGGACCACAAAGCTGAAGAAAGCCGACTCTCCTCCCA  200

seq1  GCAGCCATAGACTGCTAACAGATCTCTAACTAGGGATGGGACTTCATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCATAGACTGCTAACAGATCTCTAACTAGGGATGGGACTTCATAAC  250

seq1  TCCTCCCCCACTCATGCTTTTTCAGACTTTGTCTGAGATCACTATTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCACTCATGCTTTTTCAGACTTTGTCTGAGATCACTATTCTTC  300

seq1  AATATTTTCTCCTAAATAAGATTTGTAAATACAGAACTATAAAATTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTCCTAAATAAGATTTGTAAATACAGAACTATAAAATTGTAA  350

seq1  GCAGAAAAAAATGTTTTTACGTATACAAGCATAATCTGTGGGTATTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAAAATGTTTTTACGTATACAAGCATAATCTGTGGGTATTACAG  400

seq1  CCACAGAAAAATTTACCAAAAGCATAAAAACAAGAGGCGGAGCCAGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAAAATTTACCAAAAGCATAAAAACAAGAGGCGGAGCCAGGGTC  450

seq1  TCTCCTCAGGAATGAGAAGACACCATCACAGGGCTCTACATCCTACAGAG  500
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTCCTCAGGAATGAGAAGA-ACCATCACAGGGCTCTACATCCTACAGAG  499

seq1  AAGTGGTGTGTACAAGGTTAGGACTTGGTTTGGTCTCTTAGATAACCCAT  550
      ||  ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGTGT-CAAGGTTAGGACTTGGTTTGGTCTCTTAGATAACCCAT  548

seq1  TAATTCCAGCTTTAATTAGCTCCCTAGTCA-CCCCCTCCAATTATAATTA  599
      ||| ||||||||  |||||||||||||||| |||||||||| ||| ||||
seq2  TAA-TCCAGCTT--ATTAGCTCCCTAGTCACCCCCCTCCAA-TAT-ATTA  593

seq1  AGAATGCCACCAGTTTGGGAAATGAACTTCCTTGGTTTAAATATTTTTCC  649
      ||||||||| ||||||||| |||| |||||| |||||||   || |||||
seq2  AGAATGCCA-CAGTTTGGG-AATG-ACTTCC-TGGTTTA---ATATTTCC  636

seq1  AAGGCTGGTTTCCTCTCAAGGCAGATGAATCTTGAGGTAAAG--------  691
      |||| ||| |||||||| ||||||||||||| |||||||| |        
seq2  AAGG-TGGGTTCCTCTC-AGGCAGATGAATC-TGAGGTAAGGAAATTATG  683

seq1  -GGAAGATTAA  701
         ||||||||
seq2  CAAAAGATTAA  694

seq1: chr6_42697355_42698135
seq2: B6Ng01-035C04.g_65_832 (reverse)

seq1  ATCATGTTTCTGGCAGGCCTTGCCCTTCCCCATTTCCTCTTACTTGCTAA  50
      ||||||||| | ||||||  ||||  | ||||||  || |||| |||| |
seq2  ATCATGTTT-TTGCAGGC--TGCC--TTCCCATT--CTTTTAC-TGCT-A  41

seq1  ACTGTTAGATTACATTCGTAAAGCTAGTCACTAAGGTCTATTCCCTTACT  100
      |||| |||||||||||||| ||||||||||||||||| ||||||| ||| 
seq2  ACTG-TAGATTACATTCGT-AAGCTAGTCACTAAGGTTTATTCCC-TAC-  87

seq1  TGGCTACTCCTTTCCCATGAGGCTGACTACCAAGGTCCAGCTA-TCAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGCTACTCCTTTCCCATGAGGCTGACTACCAAGGTCCAGCTATTCAAAG  137

seq1  TATTGAAGTCCAGAAATCAAAAGCCTCCTTTTGGTTATCCTAATTAACAG  199
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TATTGAAGTCCAGAAATCAAAAGCCTCCTTTTGGGTATCCT-ATTAACAG  186

seq1  GGTAAATCAAAAGAAACCAACTCATCCTAACACAAACTTTCTCTTTTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATCAAAAGAAACCAACTCATCCTAACACAAACTTTCTCTTTTTCT  236

seq1  CTTTATAAACTGCCATTTTTCTATGGGCAATGTCTGTCTCTTCTCTATCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAACTGCCATTTTTCTATGGGCAATGTCTGTCTCTTCTCTATCC  286

seq1  AGAGACAGTCATTTATTCTCCCAAGGAAAATATCCCTTCTTCCCTCTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTCATTTATTCTCCCAAGGAAAATATCCCTTCTTCCCTCTCTT  336

seq1  GTTCCATTTCCCTTCTCCCTTGCTCTCTATCTCTTGCCTTTGTCTCTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTCCCTTCTCCCTTGCTCTCTATCTCTTGCCTTTGTCTCTTAC  386

seq1  ATCCTATCCTTTGACCCTCTGGGACTTCCAGGAAATGAGAATAGGAGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCCTTTGACCCTCTGGGACTTCCAGGAAATGAGAATAGGAGAGC  436

seq1  CACATGTACAGGAATGCTAAGGTTGAGGTCTGTCACCACTTGCAACCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTACAGGAATGCTAAGGTTGAGGTCTGTCACCACTTGCAACCTGG  486

seq1  AAGCTCAGCATGTTTATTAGGTATGACATGGGGGTTGGGGGGATGGGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGCATGTTTATTAGGTATGACATGGGGGTTGGGGGGATGGGGAT  536

seq1  AAGCTATTTTCTAGAGAAGGTATCTGCAGGTAAACATCAGAGGGAGGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTTCTAGAGAAGGTATCTGCAGGTAAACATCAGAGGGAGGAAG  586

seq1  CTGTAGTTGTCAGTTTGCATATAGTGGTTAACTGTCCATAAACACTCATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTGTCAGTTTGCATATAGTGGTTAACTGTCCATAAACACTCATA  636

seq1  CTCCAATGCCAAGGACAGTTCTGGCATTTCTTTTGAGCCTGACTCATGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGCCAAGGACAGTTCTGGCATTTCTTTTGAGCCTGACTCATGGG  686

seq1  GGAAAAGGGCTTTGCTGATTGATATGAGTCCAAGGCCTTGGTCTCCTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGGCTTTGCTGATTGATATGAGTCCAAGGCCTTGGTCTCCTTGA  736

seq1  CATGACTATGTCCTTGTCAATAGTGTGAATTC  781
      ||||||||||||||||||||||||||||||||
seq2  CATGACTATGTCCTTGTCAATAGTGTGAATTC  768