BAC Information

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BAC

Clone NameB6Ng01-035E11
Chromosome6 (Build37)
Map Location 88,025,716 - 88,146,741
singlet/doubletdoublet
Overlap geneRpn1
Upstream geneGfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035E11.bB6Ng01-035E11.g
ACCDH863787DH863788
length926735
definitionDH863787|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E11, 5' end.DH863788|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,145,807 - 88,146,741)(88,025,716 - 88,026,450)
sequence
gaattccatggccctgcagagttctaggaggagaacgcggtgcgcagagg
aaactgccctgaccgagtcggcgcggcggctgtcaaggcgggggtctccg
agcagataccctccccctcgcccggagcaggtaatttccctcttttctcc
caaagtcgcaattaaaattatctccctgtttgaacgagatgggggttgtc
ttttccatgccacattgcggaccgggcagcgtcctgcctgtcatagaggt
gaaaatggccaagcttggtgggttcccactcgaaacgagagcccggggtt
tctcacggtgctggcgcagagcggagtacagagggggatttaattactcc
gttcggcagctcagaaaatcgccatgcaacaagggcttaaccgggtggtt
aagctatgcttgagcctgggcctcaggagacccgcaacagcctagcctgc
ccacagactgggcatgggagaggaggagggtggtcctgccaggtcctttg
aggacccaaggttgccttctggaaactgcaagcaaccagccagctgggcc
gagcccctgctgaggttggagtccctgcgtctgatgcgggtctgctgggt
tttccagcaggaactaacccgtctgaaagggaaaattgcaggctaggata
gcagagcactgagttggcgaatagaggggagcctgtgctgatgctgatga
acgtgtgtgaatcacgtagatcctcaaagccaaggagccactactaggcc
caaaatggatccaccactaaaaagtccaatcaaacaacagggaggtccga
gtcagttcccagatggttaaattcaattttccccaccccaccgccccccc
cacgaaagcatatttatttcacttacaatcccactctgagttcctaagat
gccatcagtggacacttgccttttaa
gaattcactggagcccagtgtggccttcaattcatagttatccttctgtt
taagcctcttatgtgctgggattacaaagagggaggcactatgtcagtta
tgattcaaaatgtttttatttccgtctaggggaccaaaataagatataag
atctcctagcttaatgtagtagaggaagaaggagaaaaatgtagaaatcc
tgaaggatcagaagcaagagtctgagttgatgttaggtgttttgagactg
gaaaagagtggagtcctagaggaaacattttggacaatgtatttgagttg
ccaagaaaggtgtacaaatataagaacaccatgtgcaccaagaaattagg
aagttaccaggacactgaagatgcttagtgaagaaatctaacagaaaaaa
aaaaaaaaaaggttgatgaaaaagtccaaactaattatctccataagtat
aaaagaagatcctgtgggggtgcttgtgagtttaagggaagaaaacttag
aatgtttctgattatattatcttttaaaatccacacaatactgggtgtag
tggtgcacccctttaatcctatctctcaggggacagatgcaggcagacgt
ctgtgagtttgaggccagtctggcctacatagtgagttccacagatagta
gatgtgtttataaaagatagatgtgtttataaaaagataaagagagggga
gatatgttctatggggggtgtagtcaggtatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88145807_88146741
seq2: B6Ng01-035E11.b_48_973 (reverse)

seq1  TTAAAAGGCAAGTGTCCACCTGAAGGTATCTTAGGAACCTCAGAGTGGGC  50
      |||||||||||||||||| |||| || |||||||||| ||||||||||  
seq2  TTAAAAGGCAAGTGTCCA-CTGATGGCATCTTAGGAA-CTCAGAGTGG--  46

seq1  GTTTGTAAGTTGAAATAAATCTGCTTTCGTTGGGGGGGGGCGGTGGGGTT  100
      | ||||||| |||||||||| |||||||||  |||||||||||||||| |
seq2  GATTGTAAG-TGAAATAAATATGCTTTCGT--GGGGGGGGCGGTGGGG-T  92

seq1  GGGGAAAATCGAATCTAAGCCATCTTGGGAACTGACTCGGACCTCCCTGT  150
      ||||||||| |||| ||| ||||| |||||||||||||||||||||||||
seq2  GGGGAAAATTGAATTTAA-CCATC-TGGGAACTGACTCGGACCTCCCTGT  140

seq1  TGTTTGTTTGGACTTTTTAGTGGTGG-TTCATTTTTGGCCTAGTAGTGGC  199
      |||||| ||||||||||||||||||| | |||||| ||||||||||||||
seq2  TGTTTGATTGGACTTTTTAGTGGTGGATCCATTTTGGGCCTAGTAGTGGC  190

seq1  TTCTTGGCTTTGTGGATCTACCTGATTCACACACGTTCATCAGCATCAGC  249
      | |||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TCCTTGGCTTTGAGGATCTACGTGATTCACACACGTTCATCAGCATCAGC  240

seq1  ACAGGCTCCCCTCTATTCGCCAACTCAGTGCTCTGCTATCCTAGCCTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCCCCTCTATTCGCCAACTCAGTGCTCTGCTATCCTAGCCTGCA  290

seq1  ATTTTCCCTTTCAGACGGGTTAGTTCCTGCTGGAAAACCCAGCAGACCCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTTTCAGACGGGTTAGTTCCTGCTGGAAAACCCAGCAGACCCG  340

seq1  CATCAGACGCAGGGACTCCAACCTCAGCAGGGGCTCGGCCCAGCTGGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACGCAGGGACTCCAACCTCAGCAGGGGCTCGGCCCAGCTGGCTG  390

seq1  GTTGCTTGCAGTTTCCAGAAGGCAACCTTGGGTCCTCAAAGGACCTGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGCAGTTTCCAGAAGGCAACCTTGGGTCCTCAAAGGACCTGGCA  440

seq1  GGACCACCCTCCTCCTCTCCCATGCCCAGTCTGTGGGCAGGCTAGGCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCCTCCTCCTCTCCCATGCCCAGTCTGTGGGCAGGCTAGGCTGT  490

seq1  TGCGGGTCTCCTGAGGCCCAGGCTCAAGCATAGCTTAACCACCCGGTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTCTCCTGAGGCCCAGGCTCAAGCATAGCTTAACCACCCGGTTAA  540

seq1  GCCCTTGTTGCATGGCGATTTTCTGAGCTGCCGAACGGAGTAATTAAATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTTGCATGGCGATTTTCTGAGCTGCCGAACGGAGTAATTAAATC  590

seq1  CCCCTCTGTACTCCGCTCTGCGCCAGCACCGTGAGAAACCCCGGGCTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGTACTCCGCTCTGCGCCAGCACCGTGAGAAACCCCGGGCTCTC  640

seq1  GTTTCGAGTGGGAACCCACCAAGCTTGGCCATTTTCACCTCTATGACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAGTGGGAACCCACCAAGCTTGGCCATTTTCACCTCTATGACAGG  690

seq1  CAGGACGCTGCCCGGTCCGCAATGTGGCATGGAAAAGACAACCCCCATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGCTGCCCGGTCCGCAATGTGGCATGGAAAAGACAACCCCCATCT  740

seq1  CGTTCAAACAGGGAGATAATTTTAATTGCGACTTTGGGAGAAAAGAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAAACAGGGAGATAATTTTAATTGCGACTTTGGGAGAAAAGAGGGA  790

seq1  AATTACCTGCTCCGGGCGAGGGGGAGGGTATCTGCTCGGAGACCCCCGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTGCTCCGGGCGAGGGGGAGGGTATCTGCTCGGAGACCCCCGCC  840

seq1  TTGACAGCCGCCGCGCCGACTCGGTCAGGGCAGTTTCCTCTGCGCACCGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCCGCCGCGCCGACTCGGTCAGGGCAGTTTCCTCTGCGCACCGC  890

seq1  GTTCTCCTCCTAGAACTCTGCAGGGCCATGGAATTC  935
      ||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTCCTAGAACTCTGCAGGGCCATGGAATTC  926

seq1: chr6_88025716_88026450
seq2: B6Ng01-035E11.g_68_802

seq1  GAATTCACTGGAGCCCAGTGTGGCCTTCAATTCATAGTTATCCTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGCCCAGTGTGGCCTTCAATTCATAGTTATCCTTCTGTT  50

seq1  TAAGCCTCTTATGTGCTGGGATTACAAAGAGGGAGGCACTATGTCAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTCTTATGTGCTGGGATTACAAAGAGGGAGGCACTATGTCAGTTA  100

seq1  TGATTCAAAATGTTTTTATTTCCGTCTAGGGGACCAAAATAAGATATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAAATGTTTTTATTTCCGTCTAGGGGACCAAAATAAGATATAAG  150

seq1  ATCTCCTAGCTTAATGTAGTAGAGGAAGAAGGAGAAAAATGTAGAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTAGCTTAATGTAGTAGAGGAAGAAGGAGAAAAATGTAGAAATCC  200

seq1  TGAAGGATCAGAAGCAAGAGTCTGAGTTGATGTTAGGTGTTTTGAGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATCAGAAGCAAGAGTCTGAGTTGATGTTAGGTGTTTTGAGACTG  250

seq1  GAAAAGAGTGGAGTCCTAGAGGAAACATTTTGGACAATGTATTTGAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTGGAGTCCTAGAGGAAACATTTTGGACAATGTATTTGAGTTG  300

seq1  CCAAGAAAGGTGTACAAATATAAGAACACCATGTGCACCAAGAAATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAGGTGTACAAATATAAGAACACCATGTGCACCAAGAAATTAGG  350

seq1  AAGTTACCAGGACACTGAAGATGCTTAGTGAAGAAATCTAACAGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCAGGACACTGAAGATGCTTAGTGAAGAAATCTAACAGAAAAAA  400

seq1  AAAAAAAAAAGGTTGATGAAAAAGTCCAAACTAATTATCTCCATAAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGTTGATGAAAAAGTCCAAACTAATTATCTCCATAAGTAT  450

seq1  AAAAGAAGATCCTGTGGGGGTGCTTGTGAGTTTAAGGGAAGAAAACTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGATCCTGTGGGGGTGCTTGTGAGTTTAAGGGAAGAAAACTTAG  500

seq1  AATGTTTCTGATTATATTATCTTTTAAAATCCACACAATACTGGGTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTGATTATATTATCTTTTAAAATCCACACAATACTGGGTGTAG  550

seq1  TGGTGCACCCCTTTAATCCTATCTCTCAGGGGACAGATGCAGGCAGACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACCCCTTTAATCCTATCTCTCAGGGGACAGATGCAGGCAGACGT  600

seq1  CTGTGAGTTTGAGGCCAGTCTGGCCTACATAGTGAGTTCCACAGATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTTTGAGGCCAGTCTGGCCTACATAGTGAGTTCCACAGATAGTA  650

seq1  GATGTGTTTATAAAAAGATAGATGTGTTTATAAAAAGATAAAGAGAGGGG  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTTAT-AAAAGATAGATGTGTTTATAAAAAGATAAAGAGAGGGG  699

seq1  AGATATGTTCTAT-GGGGGTGTAGTCAGGTATGGGG  735
      ||||||||||||| ||||||||||||||||||||||
seq2  AGATATGTTCTATGGGGGGTGTAGTCAGGTATGGGG  735