BAC Information

Click to search

BAC

Clone NameB6Ng01-035H04
Chromosome6 (Build37)
Map Location 112,299,341 - 112,417,369
singlet/doubletdoublet
Overlap geneD630042P16Rik, LOC619975, Cav3
Upstream geneGrm7, 1700054K19Rik, Lmcd1
Downstream geneOxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H04.bB6Ng01-035H04.g
ACCDH863907DH863908
length9731,004
definitionDH863907|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H04, 5' end.DH863908|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,416,372 - 112,417,369)(112,299,341 - 112,300,361)
sequence
gaattccacactattcagtccttggtcatccagggttgggataattcaga
taagatgtctaggagtataggaggtggtgtgaggcttccagcatccactt
ggctgatgggctactgtgtgattcaaggcgctatgctttttctctagcta
tttgttgtgttgaactctgcagagagaggatggggacatggttctcggca
tagcttcagtgttggcgtctaaagacaggagcaaaaaccttagcatggct
ggatcctggtatcctagactgctgtcatgctatgtaaggggtgggccatt
cagtcccagaaggtcagtacagaagctgagttggtgttagaaatggtcat
cgcaattcgatgcagtcatgtatgactactgaataataatatcaatgggg
atttatactatatactctcttttcatttctctgataatttttactatgtc
ttacaaaagtataactgttacaatagactggaataatctcggtcagactg
accattgcccacacagtctgaaaagcactgatgcataaaattacgaatta
aaatgagatgatggctgtaaagacagtttaacaagatggatgaggtttct
ttcttttgttagaaacaatattagcagatttctgtatgatctgggatgac
catggtaaaactcataatgcatttggaccctctagatcaactctgcctat
acatcttatactagtcgtttcataaggtatataaaggccaagcataatgg
aattcaagctagatggacagcaaagcctgtgcctcaatctctctgcatgc
ttcttgcccagggtcacacatgggcagtgcctcgtcagcactgcttctgc
gatggactgactgagtcagtaaggaggagaaagacaacacagatgaccag
acagaaagctgggatcagtgtctgactctctgatgagaaaccagtaccag
agctagcatggtagcatgcgagt
gaattctttggaatctgtttcagagagacaagttctaccctggctgctgc
tttttccttcttctagcttgagaatcctatggaaatttcatttcttctca
gcccattgtttcaatagtctgatagtcagatcaagagacacacgtgtctc
tgtaatatcttcatttctgcagggctggcttgatctcaatagttgttaac
taggaaggatggagatgatcaatgagatctgaaggaaaccgtaaaaatga
cccctagaaatcttgatgactaagaaagacctttaaaccaattctaatta
tgttcctattatcctaggtgtcttagggttttattgctatgaagagacac
catgaccactgcaaatctgataatggaaagcagttaattgaggctggctt
acagtttcgagatttagtctattatcatcatggtgagacacatggcagtg
tccagacagacatagtactggagaaggagctgagagttctgcatgttgat
atgaaggcagcagcaggagactatgtgccacactcaagactatagcttga
gcataggagaccccaaagcccattgtggcacactttcctccaacaagcca
cacctcctaatagtgcaactccctaggggccaagcattcaaacatatggg
tctatggggagccatccttattaaactaaccatattaggctttatcagaa
ctaaggaaactagacaatttttggccatggattccagaaactccatgggc
ctctttccacttttctttctttggccctagtgtcttgcttcttggtgcta
aggcagtgctagcagcttcaagcaggaacatagccagcttcagtagatct
gtcttcaattcatcagttctccaaatttgcatatacctcaagttgtctta
ggtgacattcttcattgtctacggggagggggaatcccactatagaagta
ctaagagctagatgatgatcagactaagttattgaattagctaggctttg
ctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112416372_112417369
seq2: B6Ng01-035H04.b_44_1016 (reverse)

seq1  ACTCTGCATGCTACACATGCTAAGCTTCTGGGGTACTGTGTTTTCTCCAT  50
      |||| ||||||||| |||||| ||| |||  |||||  || ||||| |||
seq2  ACTC-GCATGCTAC-CATGCT-AGC-TCT--GGTAC--TGGTTTCT-CAT  41

seq1  CAGAGAGTCCAGACCACCTGATCCCAGCTTTCTGTCTGTGTCTATCTGTG  100
      |||||||| |||||   ||||||||||||||||||||| ||| |||||||
seq2  CAGAGAGT-CAGAC--ACTGATCCCAGCTTTCTGTCTG-GTC-ATCTGTG  86

seq1  TTTGTCTTTTCTCCCTTCCTTTACTGACTCAGTCAGGTCCATCGCAGAAG  150
       ||||| |||||||  ||| ||||||||||||||| ||||||||||||||
seq2  -TTGTC-TTTCTCC--TCC-TTACTGACTCAGTCA-GTCCATCGCAGAAG  130

seq1  CAGTGCTGGACGAGGCACCTGGCCCATGTGGTGACCCTGGGCAAGAAGCA  200
      ||||||| ||||||||||   |||||||| ||||||||||||||||||||
seq2  CAGTGCT-GACGAGGCAC--TGCCCATGT-GTGACCCTGGGCAAGAAGCA  176

seq1  TGCAGAGGAGATTGAGGCACAGGCTTTGCTGTCCATCTAGCTTGAATTCC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGA-GAGATTGAGGCACAGGCTTTGCTGTCCATCTAGCTTGAATTCC  225

seq1  ATTATGCTTGGCCTTTATATACCTTATGAAACGACTAGTATAAGATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTTGGCCTTTATATACCTTATGAAACGACTAGTATAAGATGTAT  275

seq1  AGGCAGAGTTGATCTAGAGGGTCCAAATGCATTATGAGTTTTACCATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGTTGATCTAGAGGGTCCAAATGCATTATGAGTTTTACCATGGT  325

seq1  CATCCCAGATCATACAGAAATCTGCTAATATTGTTTCTAACAAAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGATCATACAGAAATCTGCTAATATTGTTTCTAACAAAAGAAAG  375

seq1  AAACCTCATCCATCTTGTTAAACTGTCTTTACAGCCATCATCTCATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATCCATCTTGTTAAACTGTCTTTACAGCCATCATCTCATTTTA  425

seq1  ATTCGTAATTTTATGCATCAGTGCTTTTCAGACTGTGTGGGCAATGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTAATTTTATGCATCAGTGCTTTTCAGACTGTGTGGGCAATGGTCA  475

seq1  GTCTGACCGAGATTATTCCAGTCTATTGTAACAGTTATACTTTTGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCGAGATTATTCCAGTCTATTGTAACAGTTATACTTTTGTAAGA  525

seq1  CATAGTAAAAATTATCAGAGAAATGAAAAGAGAGTATATAGTATAAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAAAATTATCAGAGAAATGAAAAGAGAGTATATAGTATAAATCC  575

seq1  CCATTGATATTATTATTCAGTAGTCATACATGACTGCATCGAATTGCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATATTATTATTCAGTAGTCATACATGACTGCATCGAATTGCGAT  625

seq1  GACCATTTCTAACACCAACTCAGCTTCTGTACTGACCTTCTGGGACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTCTAACACCAACTCAGCTTCTGTACTGACCTTCTGGGACTGAA  675

seq1  TGGCCCACCCCTTACATAGCATGACAGCAGTCTAGGATACCAGGATCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCACCCCTTACATAGCATGACAGCAGTCTAGGATACCAGGATCCAG  725

seq1  CCATGCTAAGGTTTTTGCTCCTGTCTTTAGACGCCAACACTGAAGCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAAGGTTTTTGCTCCTGTCTTTAGACGCCAACACTGAAGCTATG  775

seq1  CCGAGAACCATGTCCCCATCCTCTCTCTGCAGAGTTCAACACAACAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAACCATGTCCCCATCCTCTCTCTGCAGAGTTCAACACAACAAATA  825

seq1  GCTAGAGAAAAAGCATAGCGCCTTGAATCACACAGTAGCCCATCAGCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAAAAGCATAGCGCCTTGAATCACACAGTAGCCCATCAGCCAA  875

seq1  GTGGATGCTGGAAGCCTCACACCACCTCCTATACTCCTAGACATCTTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTGGAAGCCTCACACCACCTCCTATACTCCTAGACATCTTATC  925

seq1  TGAATTATCCCAACCCTGGATGACCAAGGACTGAATAGTGTGGAATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATCCCAACCCTGGATGACCAAGGACTGAATAGTGTGGAATTC  973

seq1: chr6_112299341_112300361
seq2: B6Ng01-035H04.g_66_1069

seq1  GAATTCTTTGGAATCTGTTTCAGAGAGACAAGTTCTACCCTGGCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAATCTGTTTCAGAGAGACAAGTTCTACCCTGGCTGCTGC  50

seq1  TTTTTCCTTCTTCTAGCTTGAGAATCCTATGGAAATTTCATTTCTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTCTTCTAGCTTGAGAATCCTATGGAAATTTCATTTCTTCTCA  100

seq1  GCCCATTGTTTCAATAGTCTGATAGTCAGATCAAGAGACACACGTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGTTTCAATAGTCTGATAGTCAGATCAAGAGACACACGTGTCTC  150

seq1  TGTAATATCTTCATTTCTGCAGGGCTGGCTTGATCTCAATAGTTGTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATCTTCATTTCTGCAGGGCTGGCTTGATCTCAATAGTTGTTAAC  200

seq1  TAGGAAGGATGGAGATGATCAATGAGATCTGAAGGAAACCGTAAAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGATGGAGATGATCAATGAGATCTGAAGGAAACCGTAAAAATGA  250

seq1  CCCCTAGAAATCTTGATGACTAAGAAAGACCTTTAAACCAATTCTAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGAAATCTTGATGACTAAGAAAGACCTTTAAACCAATTCTAATTA  300

seq1  TGTTCCTATTATCCTAGGTGTCTTAGGGTTTTATTGCTATGAAGAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTATTATCCTAGGTGTCTTAGGGTTTTATTGCTATGAAGAGACAC  350

seq1  CATGACCACTGCAAATCTGATAATGGAAAGCAGTTAATTGAGGCTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCACTGCAAATCTGATAATGGAAAGCAGTTAATTGAGGCTGGCTT  400

seq1  ACAGTTTCGAGATTTAGTCTATTATCATCATGGTGAGACACATGGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCGAGATTTAGTCTATTATCATCATGGTGAGACACATGGCAGTG  450

seq1  TCCAGACAGACATAGTACTGGAGAAGGAGCTGAGAGTTCTGCATGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAGACATAGTACTGGAGAAGGAGCTGAGAGTTCTGCATGTTGAT  500

seq1  ATGAAGGCAGCAGCAGGAGACTATGTGCCACACTCAAGACTATAGCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCAGCAGCAGGAGACTATGTGCCACACTCAAGACTATAGCTTGA  550

seq1  GCATAGGAGACCCCAAAGCCCATTGTGGCACAC-TTCCTCCAACAAGGCC  599
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  GCATAGGAGACCCCAAAGCCCATTGTGGCACACTTTCCTCCAACAA-GCC  599

seq1  ACACCTCCTAATAGTGCAACTCCCTATGGGCCAAGCATTCAAACATATGG  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACCTCCTAATAGTGCAACTCCCTAGGGGCCAAGCATTCAAACATATGG  649

seq1  GTCTAT-GGGAGCCATCCTTATTGAAACT-ACCATATTAGGCTTTATCAG  697
      |||||| |||||||||||||||| ||||| ||||||||||||||||||||
seq2  GTCTATGGGGAGCCATCCTTATT-AAACTAACCATATTAGGCTTTATCAG  698

seq1  AACTAAGGAAACTAGACAATTTCTGGCCATGGATTCCAGAAACTCCATGG  747
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACTAAGGAAACTAGACAATTTTTGGCCATGGATTCCAGAAACTCCATGG  748

seq1  G-CTCTTTCCACTTTTCTTTCTTTGCCCCTAGTGTCTTGCTTCTT-GTGC  795
      | ||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  GCCTCTTTCCACTTTTCTTTCTTTGGCCCTAGTGTCTTGCTTCTTGGTGC  798

seq1  T-AGGCAGTGCTAAGCAGCTTCAAGCAGGAACCATAG-CAGCTTCAGTAG  843
      | |||||||||| |||||||||||||||||| ||||| ||||||||||||
seq2  TAAGGCAGTGCT-AGCAGCTTCAAGCAGGAA-CATAGCCAGCTTCAGTAG  846

seq1  ATCTGTCTTCAATTCATCAGTTTCTCCAAGATTTGCATATTACTCAAGTT  893
      |||||||||||||||||||| |||||||| ||||||||||  ||||||||
seq2  ATCTGTCTTCAATTCATCAG-TTCTCCAA-ATTTGCATATACCTCAAGTT  894

seq1  GTCTTTAGGTGACATTTCTTTCCATTGTCTTACAGTGTATGTGAGAAATC  943
      ||| |||||||||| |||||  ||||||| ||| | |     | | ||||
seq2  GTC-TTAGGTGACA-TTCTT--CATTGTC-TACGGGG---AGGGGGAATC  936

seq1  CCACTGATAGGAAGTAACTACAGAGCTAGAAATGATGATCAGACTAAGTT  993
      ||||| ||| ||||| |||| ||||||||  |||||||||||||||||||
seq2  CCACT-ATA-GAAGT-ACTA-AGAGCTAG--ATGATGATCAGACTAAGTT  980

seq1  ATTTGATATTAGCTAGGTCTTTGTCTGC  1021
      | |||| |||||||||| ||||| ||||
seq2  A-TTGA-ATTAGCTAGG-CTTTG-CTGC  1004