BAC Information

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BAC

Clone NameB6Ng01-035K06
Chromosome6 (Build37)
Map Location 48,400,983 - 48,538,584
singlet/doubletdoublet
Overlap geneSspo, EG666005, Atp6v0e2, Lrrc61, Rarres2
Upstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467
Downstream geneEG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K06.bB6Ng01-035K06.g
ACCDH864053DH864054
length906272
definitionDH864053|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K06, 5' end.DH864054|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,537,726 - 48,538,584)(48,400,983 - 48,401,254)
sequence
gaattcccctaccacacaatagttaaccaatgagtttaaaaatatactgc
tgctttgctgacaaattataatatagctgttcaacccaccccaaaaagag
tataaaagagctgtgctttttgaattcggggttaactctccctgtgaggc
tgagcaaccccaagcgcatcggaacaataaacctcttgccattgcaacga
tctatcgtcaagttgtgttttggggggtcgcacactcagtactaaggcct
tagggtcttacactgtctggccagatgatgccctgtggttcctctctggc
ttcagttttgcctggattcaaattttgatttgcctgtactaccctcatgc
caatctcctcggagctggtgtaataaaatgtcaccaggttgccggcttaa
ccccactcaccctttcaaaagtccaaaatgaaatcaaggtgtctgatggg
acagccatcttcccccagggaaagcctgtttccctgccttgccccatttg
cagctgtatcctcaagtccttggctcacagccctttccaccgtctgcaaa
gcaaagtgtccagcctcagtgtcactttgctgcatggaatttccatgcat
caatcaatgtataaaggcactggtgagtgtgcccagataatccaggatca
ctatactagcaaatacaagcaaaaactcagaaacaacatctttatatttt
ctggggcaaaaatgaaaaaaaaaaaaaccctccccatgccaggctccccc
ttggctaagcattttccccagaaacttgtaattgagaatgtctctctatt
tgaggcctgtttaattctttcttaaagctatggtcccttctccaggtcac
ctacagtgatcatcaggacaaaagtcaccctcatggaattgtaatcacca
gcagtt
tttccctatgcagtctagaccctgctgatgagctgggagtgtggcccttg
acactgaatgaccctatcctctttccagggatgagcctgcagtggcaggg
agattggctggtgctctctgggggcctgggggtggttgtgagactggaca
ggtccagttccatctccatctccgtggaccatgagttctggggacggaca
cagggcctctgtgggctttacaatggcaggccagagggtatgtgaggtgt
ctggaggagggatggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48537726_48538584
seq2: B6Ng01-035K06.b_44_898 (reverse)

seq1  TGTAGGTGACCTTGGAGAAAGGGACCATAGCTTTAAGAAAGAATTAAACA  50
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TGTAGGTGACC-TGGAG-AAGGGACCATAGCTTTAAGAAAGAATTAAACA  48

seq1  GGCCTCAAATAGAGAGACATTCTCAATTACAAGTTTTCTGGGGAAAATGC  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GGCCTCAAATAGAGAGACATTCTCAATTACAAG-TTTCTGGGGAAAATG-  96

seq1  CTTAGCCAAGGGGGAGCCTGGCATGGGGAGGGTTTTTTTTTTTTTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAAGGGGGAGCCTGGCATGGGGAGGGTTTTTTTTTTTTTCATTT  146

seq1  TTGCCCCAGAAAATATGAAGATGTTGTTTCTGAGTTTTTGCTTGTATTTG  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGCCCCAGAAAATATAAAGATGTTGTTTCTGAGTTTTTGCTTGTATTTG  196

seq1  CTAGTATAGTGATCCTGGATTATCTGGGCACACTCACCAGTGCCTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATAGTGATCCTGGATTATCTGGGCACACTCACCAGTGCCTTTATA  246

seq1  CATTGATTGATGCATGGAAATTCCATGCAGCAAAGTGACACTGAGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTGATGCATGGAAATTCCATGCAGCAAAGTGACACTGAGGCTGG  296

seq1  ACACTTTGCTTTGCAGACGGTGGAAAGGGCTGTGAGCCAAGGACTTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGCTTTGCAGACGGTGGAAAGGGCTGTGAGCCAAGGACTTGAGG  346

seq1  ATACAGCTGCAAATGGGGCAAGGCAGGGAAACAGGCTTTCCCTGGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTGCAAATGGGGCAAGGCAGGGAAACAGGCTTTCCCTGGGGGAA  396

seq1  GATGGCTGTCCCATCAGACACCTTGATTTCATTTTGGACTTTTGAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGTCCCATCAGACACCTTGATTTCATTTTGGACTTTTGAAAGGG  446

seq1  TGAGTGGGGTTAAGCCGGCAACCTGGTGACATTTTATTACACCAGCTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGGTTAAGCCGGCAACCTGGTGACATTTTATTACACCAGCTCCG  496

seq1  AGGAGATTGGCATGAGGGTAGTACAGGCAAATCAAAATTTGAATCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTGGCATGAGGGTAGTACAGGCAAATCAAAATTTGAATCCAGGC  546

seq1  AAAACTGAAGCCAGAGAGGAACCACAGGGCATCATCTGGCCAGACAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAGCCAGAGAGGAACCACAGGGCATCATCTGGCCAGACAGTGT  596

seq1  AAGACCCTAAGGCCTTAGTACTGAGTGTGCGACCCCCCAAAACACAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTAAGGCCTTAGTACTGAGTGTGCGACCCCCCAAAACACAACTT  646

seq1  GACGATAGATCGTTGCAATGGCAAGAGGTTTATTGTTCCGATGCGCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATAGATCGTTGCAATGGCAAGAGGTTTATTGTTCCGATGCGCTTGG  696

seq1  GGTTGCTCAGCCTCACAGGGAGAGTTAACCCCGAATTCAAAAAGCACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTCAGCCTCACAGGGAGAGTTAACCCCGAATTCAAAAAGCACAGC  746

seq1  TCTTTTATACTCTTTTTGGGGTGGGTTGAACAGCTATATTATAATTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATACTCTTTTTGGGGTGGGTTGAACAGCTATATTATAATTTGTC  796

seq1  AGCAAAGCAGCAGTATATTTTTAAACTCATTGGTTAACTATTGTGTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAGCAGTATATTTTTAAACTCATTGGTTAACTATTGTGTGGTA  846

seq1  GGGGAATTC  859
      |||||||||
seq2  GGGGAATTC  855

seq1: chr6_48400983_48401254
seq2: B6Ng01-035K06.g_71_342

seq1  TTTCCCTATGCAGTCTAGACCCTGCTGATGAGCTGGGAGTGTGGCCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATGCAGTCTAGACCCTGCTGATGAGCTGGGAGTGTGGCCCTTG  50

seq1  ACACTGAATGACCCTATCCTCTTTCCAGGGATGAGCCTGCAGTGGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATGACCCTATCCTCTTTCCAGGGATGAGCCTGCAGTGGCAGGG  100

seq1  AGATTGGCTGGTGCTCTCTGGGGGCCTGGGGGTGGTTGTGAGACTGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGCTGGTGCTCTCTGGGGGCCTGGGGGTGGTTGTGAGACTGGACA  150

seq1  GGTCCAGTTCCATCTCCATCTCCGTGGACCATGAGTTCTGGGGACGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTTCCATCTCCATCTCCGTGGACCATGAGTTCTGGGGACGGACA  200

seq1  CAGGGCCTCTGTGGGCTTTACAATGGCAGGCCAGAGGGTATGTGAGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTCTGTGGGCTTTACAATGGCAGGCCAGAGGGTATGTGAGGTGT  250

seq1  CTGGAGGAGGGATGGAGGGAGG  272
      ||||||||||||||||||||||
seq2  CTGGAGGAGGGATGGAGGGAGG  272