BAC Information

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BAC

Clone NameB6Ng01-035P20
Chromosome19 (Build37)6 (Build37)
Map Location 8,166,143 - 8,166,90180,165,451 - 80,165,828
singlet/doubletsingletsinglet
Overlap geneEG434674
Upstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
Downstream geneLOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035P20.bB6Ng01-035P20.g
ACCDH864309DH864310
length922372
definitionDH864309|Mus musculus domesticus DNA, BAC clone: B6Ng01-035P20, 5' end.DH864310|Mus musculus domesticus DNA, BAC clone: B6Ng01-035P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,166,143 - 8,166,901)(80,165,451 - 80,165,828)
sequence
gaattcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagctccggggtactggttagctcataatgttgttccacctatag
ggttgcagatctctttagctccttggctactttctctagctcctccattg
ggagccctatgatccatccattagctgactgtgagcatccacttctgtgt
ttgctgggccccggcatagtctcacaagagacagctacatctgcgtcctt
tcaataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctga
ttatggggtggatccctggatatggcagtctctacatggtccatcctttt
atctcagctccaaactttgtctctgtaactccttccatgggtgttttgtt
cccaaatctaaggaggggcatagtgtccacacttcagtcttcattcttct
tgagtttcatgtgtttagcaaattatatcttatatcttggttatcctagg
tttggggctaatatccacttatcagtgaatacatattgtgtgagtttctt
tgtgaatgtgttacctcactcacgatgatgccctccaggtccatccattt
ggctaggaatttcataaattcattctttttaatagctggctactgacatt
atttgctttcctagtcaattaatcaattccaattctgacactataagatg
aatgtgtctgattaatcttaaattaaattgtaacgatatgtaaaattatg
catcataggaattcgaaatataagatgatttatttacatacaattagttt
ttcaatgtttaaatatgtcacttcacactgagtcaaagactttaattgtc
tttataacatgatgagtgattt
attacatctactgaaagaaggatggatacatgactcctcaggttaagcat
cttccaaagacaattgtttcatatttctaatgcttacaaattgaaaacct
attttttaaaatgttgacactacatcggttcctacagcatagagagatgc
tagaggggtggggcagtagtgagtaagtgggtggaggagcagcctcatac
aggcaaaagggagagggaagagggggaatgagatgacgggattgtcgagt
ggtgtctgggaagggataccactttatctcaaaaccatcacttgaaatgt
aaacgaaaaaaaaatgagtaattaaaagtatttgcgtaatgtttctctgg
cctttcaactctcctgaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8166143_8166901
seq2: B6Ng01-035P20.b_78_729 (reverse)

seq1  GCTATTAAAAAGAATGAATTTAAGAAATTTCTAGGCAAATGGATGGACCT  50
      |||||||||||||||||||||| |||||| |||| |||||||||||||||
seq2  GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT  50

seq1  GGAGGGCATCATCCCGAGTGAGGTAACCCAATCACAAAGGAACTCTCACA  100
      |||||||||||||  |||||||||||| || |||||||| ||||| ||||
seq2  GGAGGGCATCATCGTGAGTGAGGTAACACATTCACAAAGAAACTCACACA  100

seq1  ATATGTACTCACTGATAAGTGGATATTAGCCCTGAATCTTAGGATATCCA  150
      ||||||| ||||||||||||||||||||||||  || | ||||||| |||
seq2  ATATGTATTCACTGATAAGTGGATATTAGCCC-CAAACCTAGGATAACCA  149

seq1  AGATATAAGATATAATTTGCTAAACACATTTAACTCAAGAGAACAAGACC  200
      |||||||||||||||||||||||||||||  ||||||||           
seq2  AGATATAAGATATAATTTGCTAAACACATGAAACTCAAG-----------  188

seq1  AAAGTGTGGACACTTTGCCCCTTCTTAGAATAGGAAACAAAACACCCATG  250
                                                        
seq2  --------------------------------------------------  188

seq1  GAAGGAGTTACAGAGACAAAATTTGGAAGTGAATCCATGAAACTCAAGAA  300
                                                   |||||
seq2  ---------------------------------------------AAGAA  193

seq1  GGAAGACCCAAGTGTGGACTCTTTGCCCCTTCTTAGAATTGGGAACAAGA  350
       ||||||  |||||||||| || ||||||| |||||| |||||||||| |
seq2  TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAA  243

seq1  CATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGA  400
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATAAAAGGA  293

seq1  TGGACCATCTATTGATTGCCATATCCAGAGATACATCCCATGATCACCTT  450
      |||||||| ||  || |||||||||||| ||| || ||||| |||| | |
seq2  TGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCAT  343

seq1  CCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACC  500
      ||||||||||||||||||||||||||||||||||||||  ||||||||| 
seq2  CCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACG  393

seq1  CAGATATAGCTGTCTCTTGTAAGACTATGCCAGAGCCTAGCAAACACAGA  550
      ||||| |||||||||||||| |||||||||| | ||| ||||||||||||
seq2  CAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGA  443

seq1  AGTGGATGCTCACAGTCAGCTGTTGAATGCACCACAGGGCCCCCAATGGA  600
      |||||||||||||||||||||  || ||| | || ||||| |||||||||
seq2  AGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGA  493

seq1  GGAATTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGG  650
      |||  ||||||||| | ||||||| |||||| || |||||||||||||||
seq2  GGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGAGATCTGCAACCCTATAGG  543

seq1  TGGAACAACAATATGAACTAAGTAGTACCCCGGAGCTCTTGTCTCTAGCT  700
      |||||||||| ||||| ||||  |||||||||||||||||| ||||||||
seq2  TGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCT  593

seq1  GCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGAAAAGAGAGGCC  750
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCC  643

seq1  CATTGGACT  759
      |||||||||
seq2  CATTGGACT  652

seq1: chr6_80165451_80165828
seq2: B6Ng01-035P20.g_70_447

seq1  GAATTCATTACATCTACTGAAAGAAGGATGGATACATGACTCCTCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATCTACTGAAAGAAGGATGGATACATGACTCCTCAGGTT  50

seq1  AAGCATCTTCCAAAGACAATTGTTTCATATTTCTAATGCTTACAAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCCAAAGACAATTGTTTCATATTTCTAATGCTTACAAATTGA  100

seq1  AAACCTATTTTTTAAAATGTTGACACTACATCGGTTCCTACAGCATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTTTTTAAAATGTTGACACTACATCGGTTCCTACAGCATAGAG  150

seq1  AGATGCTAGAGGGGTGGGGCAGTAGTGAGTAAGTGGGTGGAGGAGCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTAGAGGGGTGGGGCAGTAGTGAGTAAGTGGGTGGAGGAGCAGCC  200

seq1  TCATACAGGCAAAAGGGAGAGGGAAGAGGGGGAATGAGATGACGGGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGGCAAAAGGGAGAGGGAAGAGGGGGAATGAGATGACGGGATTG  250

seq1  TCGAGTGGTGTCTGGGAAGGGATACCACTTTATCTCAAAACCATCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGGTGTCTGGGAAGGGATACCACTTTATCTCAAAACCATCACTTG  300

seq1  AAATGTAAACGAAAAAAAAATGAGTAATAAAAAGTATTTGCGTAATGTTT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATGTAAACGAAAAAAAAATGAGTAATTAAAAGTATTTGCGTAATGTTT  350

seq1  CTCTGGCCTTTCAACTCTCCTGAATGAA  378
      ||||||||||||||||||||||||||||
seq2  CTCTGGCCTTTCAACTCTCCTGAATGAA  378