BAC Information

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BAC

Clone NameB6Ng01-036A11
Chromosome6 (Build37)
Map Location 28,740,172 - 28,868,253
singlet/doubletdoublet
Overlap geneSnd1, Lrrc4
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A11.bB6Ng01-036A11.g
ACCDH864335DH864336
length1,0921,018
definitionDH864335|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A11, 5' end.DH864336|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,740,172 - 28,741,280)(28,867,228 - 28,868,253)
sequence
gaattctgtcaatcccttctctggtattcatgcaaaacacttctgtctta
caaatgggtcattccagactgatgtgcagcatatcctgctttctgcctgc
tttagaaaccccacatctcacctcagcctccttccctccatttcactaat
atggtctagcccattacaggcacgatgtgggaagcaggcgggctgtatga
aaagagtgaggtcaggaagctgccaccagctagaacacgtccctctacta
ctgtgtaaggcgtgctagtgctgactgcgcttgccggttctctcttttga
tgtttacctttttttctcagtatttttgctcttatttatttaatacttct
tgggaatctactttgtcgattgacagtgtattgggtgtctggttagaaaa
aataaaacttgaattcatgacacagttcccaccctcaaaagcatgttgta
cgttagtttctgttttatttctcctgaaaattgtagattcccataactca
tggcgacagtgaaaggagagggtgaatttataggaactctgaaagtcacc
ttagggatcctgaggaggatcacatgtcacagacattagaacctagacac
cgagcctgaggacctctgttactccaggcagttctctgttgatggcttcc
gtccttggctcctcagcaggcttctgttttccatgtagcatgtgttttac
atgtagcgtgtgccgagccagctccagaaagagggtcaccctggctcacc
tttgttaggatacagctttctggctggcctcactagagattgacctcccc
tgcatctggcagcaccacatctgttcatcctgccctgctaccccacttct
gctcctgctttccattccagctgtagcgagagtgtgggaggacgtcactg
attggggttggtgagcccccactgctgagccacagcacctgtctgcctga
tgtactcccgttgtctttcagggtttactgttatacctctgcagtagctt
taatagcctatgaacagcagtaaaggatgccttctacctggactagtcgc
atgaagacgacagcttgtaatactgctaccccttcattccag
gaattcctcacagctattcctagatgctcaggatttagttgattcattga
caatcagtattagccactacagcaagtgaagtgtgggggcacatgccttc
accatcactgggagagagaggtgggtaaatttacatgagtttatgaccag
cttgttctacatggtgagttccaggacaggcagggctacatattgaaatc
cttgtcttagagagagagagagagagagagagagagagagagagaataaa
agaacattactgatatataggatatgaagctagcaaatagcaaggtacct
aatccccaaagtacacgaaccagaggagaggcagctcgcccactcaatgc
tcacagcatcttagttcagccaccctccggcatcacggtctctggagcca
catgtcctgtgcctaagaaagtgagtcagttctttacttaaaacatccca
gatgttctattaagcctccttgcggaaaatgacttttataattaaataaa
gcatcaacgggctcagatctttaaggaaacagatagttgttcctgaggct
gatgggctagggagggtcggaggtgtgctccccagcctgagttaacgggg
ctggattccagggactttctctctgctgagcgtcttgttccctttgacct
ttcctagccaccccacctcagacaaggctgaaaacaagaaacaggtcatg
tgagccctgtgtcttagaactgggggtgtgtgtgccccctctccacgaga
ccccattctctgttttaactgccgtctcccttcgctccattaatggctgt
ttccagtcgggtctagcctggataatgtggagggtcttttgttctgtgga
gtctttctgtcccataacgtgaccactgctcggctgccgattttctaagt
aactgtgacatggagtggccctgagcactaacaggcacttctatgcttga
tgggagcctttatggttttttgagtcttcccaattctaacggatcctgac
ctgagaaccacccccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28740172_28741280
seq2: B6Ng01-036A11.b_47_1138

seq1  GAATTCTGTCAATCCCTTCTCTGGTATTCATGCAAAACACTTCTGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAATCCCTTCTCTGGTATTCATGCAAAACACTTCTGTCTTA  50

seq1  CAAATGGGTCATTCCAGACTGATGTGCAGCATATCCTGCTTTCTGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGTCATTCCAGACTGATGTGCAGCATATCCTGCTTTCTGCCTGC  100

seq1  TTTAGAAACCCCACATCTCACCTCAGCCTCCTTCCCTCCATTTCACTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAACCCCACATCTCACCTCAGCCTCCTTCCCTCCATTTCACTAAT  150

seq1  ATGGTCTAGCCCATTACAGGCACGATGTGGGAAGCAGGCGGGCTGTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTAGCCCATTACAGGCACGATGTGGGAAGCAGGCGGGCTGTATGA  200

seq1  AAAGAGTGAGGTCAGGAAGCTGCCACCAGCTAGAACACGTCCCTCTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGAGGTCAGGAAGCTGCCACCAGCTAGAACACGTCCCTCTACTA  250

seq1  CTGTGTAAGGCGTGCTAGTGCTGACTGCGCTTGCCGGTTCTCTCTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGGCGTGCTAGTGCTGACTGCGCTTGCCGGTTCTCTCTTTTGA  300

seq1  TGTTTACCTTTTTTTCTCAGTATTTTTGCTCTTATTTATTTAATACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCTTTTTTTCTCAGTATTTTTGCTCTTATTTATTTAATACTTCT  350

seq1  TGGGAATCTACTTTGTCGATTGACAGTGTATTGGGTGTCTGGTTAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCTACTTTGTCGATTGACAGTGTATTGGGTGTCTGGTTAGAAAA  400

seq1  AATAAAACTTGAATTCATGACACAGTTCCCACCCTCAAAAGCATGTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTTGAATTCATGACACAGTTCCCACCCTCAAAAGCATGTTGTA  450

seq1  CGTTAGTTTCTGTTTTATTTCTCCTGAAAATTGTAGATTCCCATAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTTTCTGTTTTATTTCTCCTGAAAATTGTAGATTCCCATAACTCA  500

seq1  TGGCGACAGTGAAAGGAGAGGGTGAATTTATAGGAACTCTGAAAGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGACAGTGAAAGGAGAGGGTGAATTTATAGGAACTCTGAAAGTCACC  550

seq1  TTAGGGATCCTGAGGAGGATCACATGTCACAGACATTAGAACCTAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATCCTGAGGAGGATCACATGTCACAGACATTAGAACCTAGACAC  600

seq1  CGAGCCTGAGGACCTCTGTTACTCCAGGCAGTTCTCTGTTGATGGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCTGAGGACCTCTGTTACTCCAGGCAGTTCTCTGTTGATGGCTTCC  650

seq1  GTCCTTGGCTCCTCAGCAGGCTTCTGTTTTCCATGTAGCATGTGTTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGCTCCTCAGCAGGCTTCTGTTTTCCATGTAGCATGTGTTTTAC  700

seq1  ATGTAGCGTGTGCCGAGCCAGCTCCAGAAAGAGGGTCACCCTGGCTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCGTGTGCCGAGCCAGCTCCAGAAAGAGGGTCACCCTGGCTCACC  750

seq1  TTTGTTAGGATACAGCTTTCTGGCTGGCCTCACTAGAGATTGACCTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGATACAGCTTTCTGGCTGGCCTCACTAGAGATTGACCTCCCC  800

seq1  TGCATCTGGCAGCACCACATCTGTTCATCCTGCCCTGCTACCCCACTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGGCAGCACCACATCTGTTCATCCTGCCCTGCTACCCCACTTCT  850

seq1  GCTCCTGCTTTCCATTCCCAGCTGTAGCGAGAGTGTGGGAGGACGTCACT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTTTCCATT-CCAGCTGTAGCGAGAGTGTGGGAGGACGTCACT  899

seq1  GATTGGGGTTGGTGAGCCCCCCACTGGCTGAGCCACAGCACCTGTCTGCC  950
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  GATTGGGGTTGGTGAG-CCCCCACT-GCTGAGCCACAGCACCTGTCTGCC  947

seq1  TGATGTACTCCCGTTGTCTCTCAGGGGTTAACTGTCTATACCCTCTGCAG  1000
      ||||||||||||||||||| ||| ||||| ||||| |||| |||||||||
seq2  TGATGTACTCCCGTTGTCTTTCA-GGGTTTACTGT-TATA-CCTCTGCAG  994

seq1  TAGCCTTATATAGCCATATAGACAGCAGTAAAAGGGAATGCTTTCTACCT  1050
      |||| ||| |||||| |||  |||||||||||   | |||| ||||||||
seq2  TAGCTTTA-ATAGCC-TATGAACAGCAGTAAA---GGATGCCTTCTACCT  1039

seq1  AGTAACTTAGCTGCATGAGGACACACAGTCTTTGTCATACTGCTACCCCT  1100
       |  || |||  |||||| |||  ||||   |||| ||||||||||||||
seq2  GG--AC-TAGTCGCATGAAGAC-GACAG--CTTGTAATACTGCTACCCCT  1083

seq1  ACATTCCAG  1109
       ||||||||
seq2  TCATTCCAG  1092

seq1: chr6_28867228_28868253
seq2: B6Ng01-036A11.g_67_1084 (reverse)

seq1  GGGGGGGGTGGTCATCCAGGTACATGATACGTGTATGAAATTGTGAAAGA  50
      ||||||||||||  | ||||| || ||| |||   |  ||||| | ||||
seq2  GGGGGGGGTGGTTCT-CAGGT-CAGGATCCGT---TAGAATTG-GGAAGA  44

seq1  CTCAAAAAAACCAATAGAGCTCCCATCAGGCATAGAAGTGCCCTGTAAGT  100
      ||| |||||||||  |  |||||||||| ||||||||||| ||||| |||
seq2  CTC-AAAAAACCATAAAGGCTCCCATCAAGCATAGAAGTG-CCTGTTAGT  92

seq1  GCTTCAGGGCCACTCCATGTCACATGTTACCTAGAAAATCGGCAGCCGAG  150
      || ||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GC-TCAGGGCCACTCCATGTCACA-GTTACTTAGAAAATCGGCAGCCGAG  140

seq1  CAGTGGTCACG-TATGGGACAGAAAGACT-CACAGAAC-AAAGAACCTTC  197
      ||||||||||| ||||||||||||||||| |||||||| ||||| ||| |
seq2  CAGTGGTCACGTTATGGGACAGAAAGACTCCACAGAACAAAAGACCCTCC  190

seq1  ACATTATCCAGGCTAGA-CCGACTGGAAACAGCCA-TAATGGAGCGAAGG  245
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  ACATTATCCAGGCTAGACCCGACTGGAAACAGCCATTAATGGAGCGAAGG  240

seq1  GAGACCGGCAGTTAAAACAGAGATGGGGTTCTCGTGGAGAGGGGGGCACA  295
      |||| ||||||||||||||||||  ||| ||||||||||| |||||||||
seq2  GAGA-CGGCAGTTAAAACAGAGAATGGGGTCTCGTGGAGA-GGGGGCACA  288

seq1  CACATCCCCAGTTCTAGGACACAGGGCTCACATGACCTGTTTTCTTGTTT  345
      |||| ||||||||||| |||||||||||||||||||||| ||||||||||
seq2  CACACCCCCAGTTCTAAGACACAGGGCTCACATGACCTG-TTTCTTGTTT  337

seq1  TCAGCCTTGTCTGAGGTGGGGTGGCTAGGAAAGGTCAAAGGGAACAAGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGTCTGAGGTGGGGTGGCTAGGAAAGGTCAAAGGGAACAAGAC  387

seq1  GCTCAGCAGAGAGAAAGTCCCTGGAATCCAGCCCCGTTAACTCAGGCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGAGAGAAAGTCCCTGGAATCCAGCCCCGTTAACTCAGGCTGG  437

seq1  GGAGCACACCTCCGACCCTCCCTAGCCCATCAGCCTCAGGAACAACTATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACACCTCCGACCCTCCCTAGCCCATCAGCCTCAGGAACAACTATC  487

seq1  TGTTTCCTTAAAGATCTGAGCCCGTTGATGCTTTATTTAATTATAAAAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTAAAGATCTGAGCCCGTTGATGCTTTATTTAATTATAAAAGT  537

seq1  CATTTTCCGCAAGGAGGCTTAATAGAACATCTGGGATGTTTTAAGTAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCGCAAGGAGGCTTAATAGAACATCTGGGATGTTTTAAGTAAAG  587

seq1  AACTGACTCACTTTCTTAGGCACAGGACATGTGGCTCCAGAGACCGTGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTCACTTTCTTAGGCACAGGACATGTGGCTCCAGAGACCGTGAT  637

seq1  GCCGGAGGGTGGCTGAACTAAGATGCTGTGAGCATTGAGTGGGCGAGCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAGGGTGGCTGAACTAAGATGCTGTGAGCATTGAGTGGGCGAGCTG  687

seq1  CCTCTCCTCTGGTTCGTGTACTTTGGGGATTAGGTACCTTGCTATTTGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTGGTTCGTGTACTTTGGGGATTAGGTACCTTGCTATTTGCT  737

seq1  AGCTTCATATCCTATATATCAGTAATGTTCTTTTATTCTCTCTCTCTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATATCCTATATATCAGTAATGTTCTTTTATTCTCTCTCTCTCTC  787

seq1  TCTCTCTCTCTCTCTCTCTCTCTAAGACAAGGATTTCAATATGTAGCCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTAAGACAAGGATTTCAATATGTAGCCCT  837

seq1  GCCTGTCCTGGAACTCACCATGTAGAACAAGCTGGTCATAAACTCATGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTGGAACTCACCATGTAGAACAAGCTGGTCATAAACTCATGTA  887

seq1  AATTTACCCACCTCTCTCTCCCAGTGATGGTGAAGGCATGTGCCCCCACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCCACCTCTCTCTCCCAGTGATGGTGAAGGCATGTGCCCCCACA  937

seq1  CTTCACTTGCTGTAGTGGCTAATACTGATTGTCAATGAATCAACTAAATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGCTGTAGTGGCTAATACTGATTGTCAATGAATCAACTAAATC  987

seq1  CTGAGCATCTAGGAATAGCTGTGAGGAATTC  1026
      |||||||||||||||||||||||||||||||
seq2  CTGAGCATCTAGGAATAGCTGTGAGGAATTC  1018