BAC Information

Click to search

BAC

Clone NameB6Ng01-036A14
Chromosome6 (Build37)
Map Location 41,157,775 - 41,201,521
singlet/doubletdoublet
Overlap geneLOC100040359
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2
Downstream geneLOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A14.bB6Ng01-036A14.g
ACCDH864341DH864342
length1,0451,046
definitionDH864341|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A14, 5' end.DH864342|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,200,415 - 41,201,521)(41,157,775 - 41,158,862)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgttggcgaggatgtggagaaaggggaacactcctccattgttggtg
gaattgtaagcttgtacaaccactctggaaagcattgggatttctgaatc
acagtattttctacagaccttgacccaaagtcacacttagatgtgactca
ctcaaataggacatccaacaacctaagtatcccacacctcacaataagga
aggcttctaaactgagaaaattcctcactcatctgcctatctttctgtgt
agtgagcaggtggcatagagtatgcacaggtataaaggtctgattaggag
tcacattccttaaagacagcaaaaataattatcttgctccttcttagaga
cattgtacacacaagagagctctcctttgttaatgtcattgatataaagg
gaatggcagatcagctgtaacctttatcccgagtctagctgatacccata
catttagacataattctccttatgggagcatcccataataagactcttct
gactatatgatgttgttctataggatctgattagtagctgaattcataga
cccttttcaagaaacaagacagtagtgcaaagagagttgaggaaggtctt
tattgtacagtctctagggagaagcttattctcagcagaaaaattcagtt
tctccatttattttctaccttactgttttcgaaacacacacagacccacc
caccagacactccaccacacccccccccacccccccagatacatgagctc
atgcagagaggcagatgagctgttcagtctaaatatttgggagtagacag
aaatagaaaagagttcagctcaagtagatctctcttactgagctgagaaa
tgttgcagacaattctatagcagacttgtacctcttgatgactca
gaattctcatgaaacactcatgaaaacagttaaaccagatacacttttgt
tcttgaaaattttctctgtcatgctacttttcaaatactgagggctagct
gaatagtaaacacattaatccacagagctaattatccaaagagtacataa
tcataagggaatttagcaggcctgaatgtattatggtagtaaatcagact
ctaattggacttgcttgggaggtcagggcacattccctaatttttttcca
gtggaacagaagatgctaaaaggaggccatatctgattaaactggtctca
agcgaatatgaatggtaagaggaaaaacttcttgagaatttttcgaagaa
agcaacatgtggaaagcaattattaaagaggaatctagcacactatgttc
aactggaccagtttgggaaagtaaactgattatttctttctaagttcagt
ttttgaccctgtggatatgaatgcatatcttcctattgggttcctccaat
agagacaggctattaacacaactattttagattttctctctgtgacactg
gttctctacaaagaccacaatttacaatgaaatagaatcttatcaagaat
agtgattctcttttgggataaaaggcgctcaatcaagtttataggacact
gggtgaaaacctagactagaccaagaagtatcccaatgtgaaataaagat
tcagtgtagctggcatgtggttttcattcagcagaactcattttataaaa
gattaatttctgatcctgagaacttttcaaaaatataaatatagacagca
gaaaaaaatccctgcaatacaagctatagttttctgtgatttggggcaat
taaaatgacctaaggctgggaataattatggtgtaaaataaagtcaaagg
agacaacaatgttgattaatctataagtgagaaagaaaactagagagttc
gagtcagacaccaacaacacacaccaccatacaccactccatactacggg
ggggggggcagtaagctcatgaagcaagaatcgttctaagactgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41200415_41201521
seq2: B6Ng01-036A14.b_46_1090 (reverse)

seq1  TGAGTCATACAGAGGTACAAAGGTTCCTGCTATAGGATTTTGTCTGCAAC  50
      ||||||||  ||||||||||  ||  ||||||||| |  |||||||||| 
seq2  TGAGTCATCAAGAGGTACAA--GT--CTGCTATAGAA--TTGTCTGCAA-  43

seq1  CATCTCTCAGCTCCAGTAAAGAGGAGGGATCTACTTTGAGCTTGAAAACT  100
      ||| |||||||| ||||||    ||| ||||||| |||||| ||||    
seq2  CATTTCTCAGCT-CAGTAA----GAGAGATCTAC-TTGAGC-TGAA----  82

seq1  TCCTTTTTCCTATTTTCTTGTCTTAACTCCCCAAATATTTAGACCTGGAA  150
        || ||| ||||||   |||||  ||| |||||||||||||| |||  |
seq2  --CTCTTTTCTATTT--CTGTCT--ACT-CCCAAATATTTAGA-CTG--A  122

seq1  ACAGCTTCATCCTGCCTCTCTTGGCATGAGCTCCATGTTATTCTGGTGTG  200
      ||||| |||| ||||||||||  ||||||||| |||||   |||||    
seq2  ACAGC-TCAT-CTGCCTCTCT--GCATGAGCT-CATGT--ATCTGG----  161

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTG  250
                 | | ||| | | | ||||| ||| | |||||||     |
seq2  -----------GGGGGTGGGGGGGGGTGTG-GTG-GAGTGTCTG-----G  193

seq1  TGTGTGTGTCTGTGTGTTGTTTTCTGAAAACAGTAAGGTAGAAAATAAAT  300
      || ||| ||||||||| |||||   |||||||||||||||||||||||||
seq2  TGGGTGGGTCTGTGTG-TGTTT--CGAAAACAGTAAGGTAGAAAATAAAT  240

seq1  GGAGAAACCTGAATTTTTCCTGCTGAGAATAAGCTTCTCCCTAGAGACTG  350
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  GGAGAAA-CTGAATTTTT-CTGCTGAGAATAAGCTTCTCCCTAGAGACTG  288

seq1  TACAATAAAGACCTTCCTCAACTCTCTTTGCACTACTGTCTTGTTTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAGACCTTCCTCAACTCTCTTTGCACTACTGTCTTGTTTCTTG  338

seq1  AAAAGGGTCTATGAATTCAGCTACTAATCAGATCCTATAGAACAACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTCTATGAATTCAGCTACTAATCAGATCCTATAGAACAACATCA  388

seq1  TATAGTCAGAAGAGTCTTATTATGGGATGCTCCCATAAGGAGAATTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCAGAAGAGTCTTATTATGGGATGCTCCCATAAGGAGAATTATGT  438

seq1  CTAAATGTATGGGTATCAGCTAGACTCGGGATAAAGGTTACAGCTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTATGGGTATCAGCTAGACTCGGGATAAAGGTTACAGCTGATCT  488

seq1  GCCATTCCCTTTATATCAATGACATTAACAAAGGAGAGCTCTCTTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCCTTTATATCAATGACATTAACAAAGGAGAGCTCTCTTGTGTG  538

seq1  TACAATGTCTCTAAGAAGGAGCAAGATAATTATTTTTGCTGTCTTTAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGTCTCTAAGAAGGAGCAAGATAATTATTTTTGCTGTCTTTAAGG  588

seq1  AATGTGACTCCTAATCAGACCTTTATACCTGTGCATACTCTATGCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACTCCTAATCAGACCTTTATACCTGTGCATACTCTATGCCACCT  638

seq1  GCTCACTACACAGAAAGATAGGCAGATGAGTGAGGAATTTTCTCAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTACACAGAAAGATAGGCAGATGAGTGAGGAATTTTCTCAGTTTA  688

seq1  GAAGCCTTCCTTATTGTGAGGTGTGGGATACTTAGGTTGTTGGATGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTCCTTATTGTGAGGTGTGGGATACTTAGGTTGTTGGATGTCCT  738

seq1  ATTTGAGTGAGTCACATCTAAGTGTGACTTTGGGTCAAGGTCTGTAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTGAGTCACATCTAAGTGTGACTTTGGGTCAAGGTCTGTAGAAA  788

seq1  ATACTGTGATTCAGAAATCCCAATGCTTTCCAGAGTGGTTGTACAAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGATTCAGAAATCCCAATGCTTTCCAGAGTGGTTGTACAAGCTT  838

seq1  ACAATTCCACCAACAATGGAGGAGTGTTCCCCTTTCTCCACATCCTCGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCACCAACAATGGAGGAGTGTTCCCCTTTCTCCACATCCTCGCC  888

seq1  AACATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGAGTG  938

seq1  AAGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAATCTCAGTGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGA  988

seq1  TGTTGAACATTTTTTCAGGTGTTTCTCTGCCATTCGGTATTCCTCAGGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAACATTTTTTCAGGTGTTTCTCTGCCATTCGGTATTCCTCAGGTG  1038

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1045

seq1: chr6_41157775_41158862
seq2: B6Ng01-036A14.g_65_1110

seq1  GAATTCTCATGAAACACTCATGAAAACAGTTAAACCAGATACACTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGAAACACTCATGAAAACAGTTAAACCAGATACACTTTTGT  50

seq1  TCTTGAAAATTTTCTCTGTCATGCTACTTTTCAAATACTGAGGGCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAATTTTCTCTGTCATGCTACTTTTCAAATACTGAGGGCTAGCT  100

seq1  GAATAGTAAACACATTAATCCACAGAGCTAATTATCCAAAGAGTACATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAAACACATTAATCCACAGAGCTAATTATCCAAAGAGTACATAA  150

seq1  TCATAAGGGAATTTAGCAGGCCTGAATGTATTATGGTAGTAAATCAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGGAATTTAGCAGGCCTGAATGTATTATGGTAGTAAATCAGACT  200

seq1  CTAATTGGACTTGCTTGGGAGGTCAGGGCACATTCCCTAATTTTTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGACTTGCTTGGGAGGTCAGGGCACATTCCCTAATTTTTTTCCA  250

seq1  GTGGAACAGAAGATGCTAAAAGGAGGCCATATCTGATTAAACTGGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAGAAGATGCTAAAAGGAGGCCATATCTGATTAAACTGGTCTCA  300

seq1  AGCGAATATGAATGGTAAGAGGAAAAACTTCTTGAGAATTTTTCGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATATGAATGGTAAGAGGAAAAACTTCTTGAGAATTTTTCGAAGAA  350

seq1  AGCAACATGTGGAAAGCAATTATTAAAGAGGAATCTAGCACACTATGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGTGGAAAGCAATTATTAAAGAGGAATCTAGCACACTATGTTC  400

seq1  AACTGGACCAGTTTGGGAAAGTAAACTGATTATTTCTTTCTAAGTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACCAGTTTGGGAAAGTAAACTGATTATTTCTTTCTAAGTTCAGT  450

seq1  TTTTGACCCTGTGGATATGAATGCATATCTTCCTATTGGGTTCCTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCCTGTGGATATGAATGCATATCTTCCTATTGGGTTCCTCCAAT  500

seq1  AGAGACAGGCTATTAACACAACTATTTTAGATTTTCTCTCTGTGACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGCTATTAACACAACTATTTTAGATTTTCTCTCTGTGACACTG  550

seq1  GTTCTCTACAAAGACCACAATTTACAATGAAATAGAATCTTATCAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTACAAAGACCACAATTTACAATGAAATAGAATCTTATCAAGAAT  600

seq1  AGTGATTCTCTTTTGGGATAAAAGGCGCTCAATCAAGTTTATAGGACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTCTTTTGGGATAAAAGGCGCTCAATCAAGTTTATAGGACACT  650

seq1  GGGTGAAAACCTAGACTAGACCAAGAAGTATCCCAATGTGAAATAAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAACCTAGACTAGACCAAGAAGTATCCCAATGTGAAATAAAGAT  700

seq1  TCAGTGTAGCTGGCATGTGGTTTTCATTCAGCAGAACTCATTTTATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTAGCTGGCATGTGGTTTTCATTCAGCAGAACTCATTTTATAAAA  750

seq1  GATTAATTTTCTTGATCCTGAGAACTTTTCAAAAATATAAATATAGACAG  800
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTT--CTGATCCTGAGAACTTTTCAAAAATATAAATATAGACAG  798

seq1  CAGAAAAAAAATCCCTGCAAATACAAGCTATAGTTTTCTGTTGATTTGGG  850
      ||| |||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CAG-AAAAAAATCCCTGC-AATACAAGCTATAGTTTTCTG-TGATTTGGG  845

seq1  GCAATTAAAATGACCTAAGGGCTGGGAATAATTATGGTGTAAAATAAAAG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||  
seq2  GCAATTAAAATGACCTAA-GGCTGGGAATAATTATGGTGTAAAATAAA--  892

seq1  GTCAAAGGAAGACAAACAAATGTTTGATATATCTAATAAAGTGAGAAAAG  950
      |||||||| ||||||   |||| |||||  |||||   |||||||||   
seq2  GTCAAAGG-AGACAA--CAATG-TTGATTAATCTA--TAAGTGAGAA---  933

seq1  AAAAAACTAGAGAGTTTCCAGAGTCAGGAACACACACACACACACACACA  1000
      | ||||||||||||||    |||||||        ||||  ||| |||||
seq2  AGAAAACTAGAGAGTT---CGAGTCAG--------ACACCAACA-ACACA  971

seq1  CACACACACACACACACACACACACACACACGGGGGGGGGGGCAGTAAAG  1050
      ||| ||| || |||| ||| | || ||  ||||||||||||||||| |||
seq2  CAC-CAC-CATACAC-CACTC-CATAC-TACGGGGGGGGGGGCAGT-AAG  1015

seq1  CTCAATGAAAGCACAAGAATCAGTTTCCATAGACTGAC  1088
      ||| |||||    |||||||| |||  |  ||||||||
seq2  CTC-ATGAA---GCAAGAATC-GTT--CTAAGACTGAC  1046